Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Reverse (-)

68708657 .. 68712317

Gene Structure 3661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG508400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGGCCAAGAACTTGAAGAACAAGCAGCGCCGCCGGTCATCCTCCGATGGCAAGATTTGGGCGAGTTGCCGAAAAACGAGCTTATTAATAAGGCTCTTGAAGACAATACCCCTCCTCGTGGTTTGGGAATATCTAGTGAAATGTTGCCTAAAGAGTCACTAAGTGATCGATCAAGCATGGAATACCAAGCAATGAAGCAAAATATATTTTCTTTCATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.39

Weight (kDa)

4.52

Isoelectric Point (pI)

75.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	17, 101
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	26
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	2 cut(s)	27, 32
BlsI	GCNGC	2 cut(s)	28, 33
BmgT120I	GGNCC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	169
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	119
BsnI	GGCC	1 cut(s)	6
Bsp143I	GATC	2 cut(s)	166, 170
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	6
BspDI	ATCGAT	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssMI	GATC	2 cut(s)	166, 170
BssSI	CACGAG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	169, 173
BstMBI	GATC	2 cut(s)	166, 170
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	108
Bsu15I	ATCGAT	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	169
CviAII	CATG	2 cut(s)	178, 220
CviJI	RGCY	3 cut(s)	6, 82, 95
CviKI_1	RGCY	3 cut(s)	6, 82, 95
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	2 cut(s)	168, 172
DpnII	GATC	2 cut(s)	166, 170
DraIII	CACNNNGTG	1 cut(s)	164
FaeI	CATG	2 cut(s)	181, 223
FaiI	YATR	3 cut(s)	179, 206, 221
FatI	CATG	2 cut(s)	177, 219
Fnu4HI	GCNGC	2 cut(s)	27, 32
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	27, 32
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	2 cut(s)	27, 32
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	181, 223
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	181, 223
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	166, 170
LpnPI	CCDG	1 cut(s)	48
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	2 cut(s)	168, 172
MboI	GATC	2 cut(s)	166, 170
MboII	GAAGA	2 cut(s)	29, 113
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	53, 123, 126
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	166, 170
NlaIII	CATG	2 cut(s)	181, 223
NmuCI	GTSAC	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	28, 33
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	27, 32
Sau3AI	GATC	2 cut(s)	166, 170
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	164
SetI	ASST	1 cut(s)	84
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	169
TauI	GCSGC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	205, 209
VspI	ATTAAT	1 cut(s)	87
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.