Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Reverse (-)

59819972 .. 59821449

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTAAAAGAAGATAGAAGCAAGTTTGGAACATGTAGGCCTCTTCGCCCTGAGGACATGGGTTGTCATATATGTCTGAAGAGAGACCACTGGCCTATAACATGCCCCTACCAGCTCGTACATCCTCCGGGTGCACCTATTGACCCTTTTGCTGAGATAGTTTGTTTGTGTTGTGGTGAGGAGAAACCCCACCCTGGTGAGCCTGGTGTTGACTGGAAAGCAAGAGCCATTCTCAAGATTTCTTCAACTTATCCCAGTTTTGACTCATATGCAGCAGTGGGTGCAGCTGATGGCGCAAGTGGGTCAAAATCAAGAGGTCGCCCGCCATTGAAAAAGACTGAATCTAAGAAAGAGCAAGAGGATCATAATTCTGAGCCTAGAGATTCTTCTAATACATTTTGTGCTTGCATTTTAAAAGTTTTATCACCGTCACAAAGTGATGTTAATCCAAAAAGAGTTCGTAAAGTATGTAATCCAGTTCGAGTGCAAATGGTGACCAGTGACTTGATTTCAACTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.13

Weight (kDa)

8.52

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	98
AdeI	CACNNNGTG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	246, 331, 513
AjnI	CCWGG	2 cut(s)	193, 202
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	115, 287
AluI	AGCT	2 cut(s)	115, 287
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	78
Alw44I	GTGCAC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	38, 92
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	272, 284
AspLEI	GCGC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	4 cut(s)	188, 209, 417, 505
AxyI	CCTNAGG	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	284, 296
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	195, 204
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	273, 285
BlsI	GCNGC	2 cut(s)	274, 286
Bme1390I	CCNGG	3 cut(s)	129, 195, 204
BmrFI	CCNGG	3 cut(s)	129, 195, 204
BmrI	ACTGGG	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	5 cut(s)	95, 218, 255, 476, 498
Bse21I	CCTNAGG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	195, 204
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	42, 144, 363
BseNI	ACTGG	5 cut(s)	95, 218, 255, 476, 498
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	284, 296
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	40, 94
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	40, 94
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	40, 94
BspCNI	CTCAG	3 cut(s)	43, 145, 364
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	5 cut(s)	95, 218, 255, 476, 498
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	195, 204
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	2 cut(s)	48, 74
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	323, 406
BstDEI	CTNAG	4 cut(s)	51, 153, 345, 372
BstEII	GGTNACC	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 293
BstNI	CCWGG	2 cut(s)	195, 204
BstNSI	RCATGY	2 cut(s)	36, 105
BstPI	GGTNACC	1 cut(s)	493
BstSCI	CCNGG	3 cut(s)	127, 193, 202
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	284, 296
Bsu36I	CCTNAGG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	40, 94
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	88, 282, 505
Cac8I	GCNNGC	2 cut(s)	323, 406
CfoI	GCGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	3 cut(s)	33, 58, 102
CviJI	RGCY	7 cut(s)	40, 94, 115, 202, 227, 287, 376
CviKI_1	RGCY	7 cut(s)	40, 94, 115, 202, 227, 287, 376
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	4 cut(s)	51, 153, 345, 372
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraI	TTTAAA	1 cut(s)	414
DraIII	CACNNNGTG	1 cut(s)	437
Eam1104I	CTCTTC	2 cut(s)	48, 74
EarI	CTCTTC	2 cut(s)	48, 74
Eco147I	AGGCCT	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	51
Eco91I	GGTNACC	1 cut(s)	493
EcoO65I	GGTNACC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	193, 202
FaeI	CATG	3 cut(s)	36, 61, 105
FatI	CATG	3 cut(s)	32, 57, 101
FauI	CCCGC	1 cut(s)	330
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	273, 285
FokI	GGATG	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	273, 285
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	273, 285
HaeIII	GGCC	2 cut(s)	40, 94
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	36, 61, 105
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	263, 341, 383
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	4 cut(s)	188, 209, 417, 505
Hpy166II	GTNNAC	2 cut(s)	134, 211
Hpy188I	TCNGA	2 cut(s)	78, 373
Hpy188III	TCNNGA	2 cut(s)	235, 312
Hpy8I	GTNNAC	2 cut(s)	134, 211
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4V	TGCA	5 cut(s)	134, 272, 284, 408, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 293
HpyF3I	CTNAG	4 cut(s)	51, 153, 345, 372
Hsp92II	CATG	3 cut(s)	36, 61, 105
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	361
Lsp1109I	GCAGC	2 cut(s)	284, 296
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	429, 493, 500
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	5 cut(s)	23, 35, 91, 234, 378
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	6 cut(s)	46, 51, 135, 172, 308, 352
MseI	TTAA	3 cut(s)	5, 413, 444
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	3 cut(s)	129, 195, 204
MvaI	CCWGG	2 cut(s)	195, 204
MwoI	GCNNNNNNNGC	2 cut(s)	281, 293
NciI	CCSGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	36, 61, 105
NmuCI	GTSAC	3 cut(s)	429, 493, 500
NspI	RCATGY	2 cut(s)	36, 105
OliI	CACNNNNGTG	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	40
PciI	ACATGT	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	341, 383
PkrI	GCNGC	2 cut(s)	274, 286
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PscI	ACATGT	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	193, 202
PspEI	GGTNACC	1 cut(s)	493
PspGI	CCWGG	2 cut(s)	193, 202
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	5, 413, 444
SatI	GCNGC	2 cut(s)	273, 285
Sau3AI	GATC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	129, 195, 204
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	117, 139, 289, 319
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	367
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	3 cut(s)	127, 193, 202
TaaI	ACNGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	481
TasI	AATT	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	341, 383
Tru1I	TTAA	3 cut(s)	5, 413, 444
Tru9I	TTAA	3 cut(s)	5, 413, 444
TscAI	CASTG	3 cut(s)	95, 282, 505
TseFI	GTSAC	3 cut(s)	429, 493, 500
TseI	GCWGC	2 cut(s)	272, 284
Tsp45I	GTSAC	3 cut(s)	429, 493, 500
TspRI	CASTG	3 cut(s)	95, 282, 505
VneI	GTGCAC	1 cut(s)	132
XceI	RCATGY	2 cut(s)	36, 105
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.