Rh4CG299700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002864
Physical Location & Seq
Forward (+)
56007638 .. 56007868
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG299700.1

Sequence Viewer

Length: 231 bp
ATGGGCCAGGAACTTGAAGAACAAGCAGTGCCGCCGGTCATCCTCCGATGGCAAGATTTGGGCGAGTTACCGGAAAACGAGTTGATTATTAAGGCTCCTGAAGACAATACTCCTCCCTTCAAAGCTCTTCTTTTCTCTCAACCCACCCAATCCCAATGCCGAATCCGAAACCACGACGTCCCCAGTCGACCCACCAATTCCTGGGAATGTCGAATTGCCTACTGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.75

Weight (kDa)

4.78

Isoelectric Point (pI)

80.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 201
AccI GTMKAC 1 cut(s) 187
AciI CCGC 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 2 cut(s) 17, 121
AjnI CCWGG 2 cut(s) 6, 200
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
AoxI GGCC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 108
BccI CCATC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 8, 202
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 8, 202
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 8, 202
BmrI ACTGGG 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 8, 202
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 102
BshFI GGCC 1 cut(s) 6
BsiSI CCGG 2 cut(s) 35, 71
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 6
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 8, 202
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 39
BstNI CCWGG 2 cut(s) 8, 202
BstSCI CCNGG 2 cut(s) 6, 200
BstV2I GAAGAC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 3 cut(s) 6, 95, 125
CviKI_1 RGCY 3 cut(s) 6, 95, 125
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 6, 200
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 164
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 6
HapII CCGG 2 cut(s) 35, 71
Hin1I GRCGYC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 1 cut(s) 162
HpaII CCGG 2 cut(s) 35, 71
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 47, 167
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 177
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 20, 48, 84, 111, 187, 196, 214
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 66
MboII GAAGA 3 cut(s) 29, 113, 119
MluCI AATT 2 cut(s) 196, 213
MnlI CCTC 2 cut(s) 53, 123
MseI TTAA 2 cut(s) 90, 229
MspI CCGG 2 cut(s) 35, 71
MspR9I CCNGG 2 cut(s) 8, 202
MvaI CCWGG 2 cut(s) 8, 202
NlaIV GGNNCC 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 162
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 6, 200
PspGI CCWGG 2 cut(s) 6, 200
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 4
SalI GTCGAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 90, 229
SatI GCNGC 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 8, 202
SetI ASST 2 cut(s) 127, 180
Sse9I AATT 2 cut(s) 196, 213
SsiI CCGC 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 6, 200
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 187, 211
TasI AATT 2 cut(s) 196, 213
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 90, 229
Tru9I TTAA 2 cut(s) 90, 229
TscAI CASTG 1 cut(s) 33
TspRI CASTG 1 cut(s) 33
Van91I CCANNNNNTGG 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 187
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.