Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Forward (+)

29073411 .. 29074393

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATGTTGATGAAGCATCTGCCGCGGAGCCGCCGGTGATCCTCCGATGGCAAGATCTGCCGCCCGACGATCCTGAGAGCCACCGAAGATTATACGGCTCTTGCTGGGGTTTTGAGGAATTAAAAGATCAATTTGATTATCTAACAGGGAAAGGGAAACAAGGACCAGAGTTGGCTAATTACATCAGAATGGGTGAGGAACTCATGCCCTGTAAGATGTGTCCTAATCCAGATTGGCACCGGACTTTTAATTGCCCAAACCTTACTCCTGAGCTGAAGGAAACACTAAAAGAAGCAAGAACCGAGTTCGGACATAGTAAGGCTTTTGACCCTGATGACATGGGCTGTCATATATGTGAGAGGAGAGAACACTGGTCTTCAGAATGCCCGTACCTCGTTGTATATCCGGGTGGTGCACATGTTGGTCCTTATGCTGAGTTTATTTGTCTGTGTTGTGGTGAGCTGAATCCCCCCCACCCTGGTAATCCTGGTGTTGACTGGGATGCACGCTGCCGTCTCAAACCTGCCTTTTCTTATCCCAAATTCAAACCCAAATCAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.29

Weight (kDa)

5.37

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	237
AccII	CGCG	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 26, 32, 62
AclWI	GGATC	2 cut(s)	34, 65
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	2 cut(s)	296, 363
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	479, 557
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	547
AjnI	CCWGG	2 cut(s)	478, 487
AluBI	AGCT	2 cut(s)	274, 463
AluI	AGCT	2 cut(s)	274, 463
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	521
Alw44I	GTGCAC	1 cut(s)	414
AlwI	GGATC	2 cut(s)	34, 65
ApaLI	GTGCAC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	164, 425
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	49, 206, 470
AvaII	GGWCC	2 cut(s)	164, 425
BaeGI	GKGCMC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	2 cut(s)	112, 498
BciT130I	CCWGG	2 cut(s)	480, 489
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	562
BfuAI	ACCTGC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	4 cut(s)	24, 32, 62, 511
BlsI	GCNGC	4 cut(s)	25, 33, 63, 512
Bme1390I	CCNGG	3 cut(s)	408, 480, 489
Bme18I	GGWCC	2 cut(s)	164, 425
BmgT120I	GGNCC	2 cut(s)	164, 425
BmiI	GGNNCC	2 cut(s)	30, 239
BmrFI	CCNGG	3 cut(s)	408, 480, 489
BmrI	ACTGGG	1 cut(s)	508
BmsI	GCATC	2 cut(s)	26, 493
BmuI	ACTGGG	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	24, 478
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 557
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	377, 503
BseBI	CCWGG	2 cut(s)	480, 489
BseDI	CCNNGG	2 cut(s)	24, 478
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	479, 557
BseMII	CTCAG	3 cut(s)	66, 261, 426
BseNI	ACTGG	2 cut(s)	377, 503
BseRI	GAGGAG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	497
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	3 cut(s)	35, 241, 407
BslI	CCNNNNNNNGG	2 cut(s)	479, 557
BsmAI	GTCTC	1 cut(s)	521
BsmBI	CGTCTC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	4 cut(s)	39, 55, 70, 127
BspACI	CCGC	4 cut(s)	24, 26, 32, 62
BspCNI	CTCAG	3 cut(s)	67, 262, 427
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	30, 239
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	34, 65
BspT107I	GGYRCC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	377, 503
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	24, 478
BssMI	GATC	4 cut(s)	39, 55, 70, 127
Bst2UI	CCWGG	2 cut(s)	480, 489
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	75, 270, 435
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	4 cut(s)	42, 58, 73, 130
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	4 cut(s)	39, 55, 70, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 58
BstNI	CCWGG	2 cut(s)	480, 489
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	406, 478, 487
BstSLI	GKGCMC	1 cut(s)	418
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	370
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	164, 425
Cfr42I	CCGCGG	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	3 cut(s)	205, 340, 419
CviJI	RGCY	9 cut(s)	31, 81, 99, 176, 274, 323, 345, 463, 561
CviKI_1	RGCY	9 cut(s)	31, 81, 99, 176, 274, 323, 345, 463, 561
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	75, 270, 435
DpnI	GATC	4 cut(s)	41, 57, 72, 129
DpnII	GATC	4 cut(s)	39, 55, 70, 127
Eco47I	GGWCC	2 cut(s)	164, 425
Eco57I	CTGAAG	2 cut(s)	296, 363
EcoRII	CCWGG	2 cut(s)	478, 487
Esp3I	CGTCTC	1 cut(s)	521
FaeI	CATG	3 cut(s)	208, 343, 422
FatI	CATG	3 cut(s)	204, 339, 418
Fnu4HI	GCNGC	4 cut(s)	24, 32, 62, 511
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	4 cut(s)	24, 32, 62, 511
FspBI	CTAG	1 cut(s)	562
GluI	GCNGC	4 cut(s)	24, 32, 62, 511
GsaI	CCCAGC	1 cut(s)	109
HapII	CCGG	3 cut(s)	35, 241, 407
Hin1II	CATG	3 cut(s)	208, 343, 422
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	3 cut(s)	35, 241, 407
HphI	GGTGA	3 cut(s)	49, 206, 470
Hpy166II	GTNNAC	2 cut(s)	416, 496
Hpy188I	TCNGA	4 cut(s)	47, 188, 311, 382
Hpy188III	TCNNGA	3 cut(s)	74, 230, 269
Hpy8I	GTNNAC	2 cut(s)	416, 496
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	416, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 58
HpyF3I	CTNAG	3 cut(s)	75, 270, 435
Hsp92II	CATG	3 cut(s)	208, 343, 422
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	39, 55, 70, 127
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	2 cut(s)	26, 493
MaeI	CTAG	1 cut(s)	562
MalI	GATC	4 cut(s)	41, 57, 72, 129
MboI	GATC	4 cut(s)	39, 55, 70, 127
MboII	GAAGA	2 cut(s)	99, 369
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	5 cut(s)	119, 131, 178, 250, 542
MnlI	CCTC	5 cut(s)	53, 109, 190, 354, 404
MseI	TTAA	2 cut(s)	122, 249
MslI	CAYNNNNRTG	2 cut(s)	188, 354
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	3 cut(s)	35, 241, 407
MspR9I	CCNGG	3 cut(s)	408, 480, 489
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	480, 489
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	23, 58
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	39, 55, 70, 127
NlaIII	CATG	3 cut(s)	208, 343, 422
NlaIV	GGNNCC	2 cut(s)	30, 239
NspI	RCATGY	1 cut(s)	422
PciI	ACATGT	1 cut(s)	418
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	25, 33, 63, 512
PscI	ACATGT	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	478, 487
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	2 cut(s)	478, 487
PspN4I	GGNNCC	2 cut(s)	30, 239
PspPI	GGNCC	2 cut(s)	164, 425
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	188, 354
SacII	CCGCGG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	122, 249
SatI	GCNGC	4 cut(s)	24, 32, 62, 511
Sau3AI	GATC	4 cut(s)	39, 55, 70, 127
Sau96I	GGNCC	2 cut(s)	164, 425
ScrFI	CCNGG	3 cut(s)	408, 480, 489
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	5 cut(s)	264, 276, 396, 465, 526
SfaNI	GCATC	2 cut(s)	26, 493
Sfr303I	CCGCGG	1 cut(s)	27
SgrAI	CRCCGGYG	1 cut(s)	34
SgrBI	CCGCGG	1 cut(s)	27
SinI	GGWCC	2 cut(s)	164, 425
SmiMI	CAYNNNNRTG	2 cut(s)	188, 354
Sse9I	AATT	5 cut(s)	119, 131, 178, 250, 542
SsiI	CCGC	4 cut(s)	24, 26, 32, 62
SspMI	CTAG	1 cut(s)	562
StyD4I	CCNGG	3 cut(s)	406, 478, 487
TasI	AATT	5 cut(s)	119, 131, 178, 250, 542
TauI	GCSGC	3 cut(s)	26, 34, 64
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	2 cut(s)	122, 249
Tru9I	TTAA	2 cut(s)	122, 249
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	1 cut(s)	510
TspDTI	ATGAA	2 cut(s)	17, 27
TspRI	CASTG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	414
VpaK11BI	GGWCC	2 cut(s)	164, 425
XapI	RAATTY	1 cut(s)	542
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.