Rw5G038310

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002864
Physical Location & Seq
Forward (+)
67563933 .. 67564709
777 bp
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UTR
Exon/CDS
Intron
Rw5G038310.1

Sequence Viewer

Length: 480 bp
ATGTGTCCGAATCCAGATTGGCACCGGACTGTTCACTGCCCCAACCTCACTCCTGAGCTCAAGGAAAGGCTAAAAGTAGCAAGAAGCAGGGATCGAAAACTTAAAGCTTTCCACCCTGATGACATGGCTTGTCATATTTGTCTAAAGACAGACCACTGGTCTTCAGAATGCTCATACCTGCTCGAATATCCGAGGGGTGCAATTGTTGGCCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAAGAGATGCCCCACCCTGGTGTACCTGGTCTTGACTGGAAAGCAAGAGTTATTCTCAAGCCTGCTGTTACGTATCCCAGTATCAAGGAACAGCTGATGGAACTGACACTGGCATCAGAAGGCGCAGCTGATGGCAATGGCAACAACACAACCGCAGCTGCTGGCACTGCCACCTTCTCCTCTACATATGATGAAAACTTGCTTCGTTCAACCAGCCTTCTTGCGGAGGATACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.6

Weight (kDa)

6.05

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 21
AciI CCGC 2 cut(s) 396, 467
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 260, 466
AgsI TTSAA 1 cut(s) 453
AhdI GACNNNNNGTC 1 cut(s) 157
AjnI CCWGG 2 cut(s) 259, 268
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 5 cut(s) 58, 107, 337, 371, 401
AluI AGCT 5 cut(s) 58, 107, 337, 371, 401
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 3 cut(s) 368, 398, 401
AspLEI GCGC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 380, 388, 410
BccI CCATC 2 cut(s) 334, 368
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 2 cut(s) 261, 270
BciVI GTATCC 2 cut(s) 327, 466
BfuAI ACCTGC 1 cut(s) 186
BfuI GTATCC 2 cut(s) 327, 466
BisI GCNGC 3 cut(s) 369, 399, 402
BlsI GCNGC 3 cut(s) 370, 400, 403
Bme1390I CCNGG 2 cut(s) 261, 270
BmeRI GACNNNNNGTC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 261, 270
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 240, 365
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 282, 314
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 44, 284
BsaAI YACGTR 2 cut(s) 315, 477
BsaJI CCNNGG 2 cut(s) 191, 259
BsaWI WCCGGW 1 cut(s) 24
BsaXI ACNNNNNCTCC 1 cut(s) 461
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 466
Bse1I ACTGG 4 cut(s) 161, 284, 321, 357
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 2 cut(s) 261, 270
BseDI CCNNGG 2 cut(s) 191, 259
BseLI CCNNNNNNNGG 2 cut(s) 260, 466
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 4 cut(s) 161, 284, 321, 357
BseRI GAGGAG 1 cut(s) 412
BseXI GCAGC 3 cut(s) 380, 388, 410
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 260, 466
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 2 cut(s) 396, 467
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 4 cut(s) 161, 284, 321, 357
BssECI CCNNGG 2 cut(s) 191, 259
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 2 cut(s) 261, 270
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 240
BstBAI YACGTR 2 cut(s) 315, 477
BstC8I GCNNGC 2 cut(s) 306, 406
BstDEI CTNAG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 2 cut(s) 261, 270
BstSCI CCNGG 2 cut(s) 259, 268
BstSNI TACGTA 2 cut(s) 315, 477
BstV1I GCAGC 3 cut(s) 380, 388, 410
BstV2I GAAGAC 1 cut(s) 153
BsuI GTATCC 2 cut(s) 327, 466
BsuRI GGCC 1 cut(s) 210
BtsI GCAGTG 2 cut(s) 34, 408
BtsIMutI CAGTG 4 cut(s) 34, 154, 350, 408
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 306, 406
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 368
CsiI ACCWGGT 1 cut(s) 268
Csp6I GTAC 1 cut(s) 266
CviAII CATG 1 cut(s) 124
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 240
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 58
Eco105I TACGTA 2 cut(s) 315, 477
Eco24I GRGCYC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 259, 268
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 1 cut(s) 127
FaiI YATR 5 cut(s) 125, 135, 175, 430, 432
FatI CATG 1 cut(s) 123
FauNDI CATATG 1 cut(s) 430
Fnu4HI GCNGC 3 cut(s) 369, 399, 402
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 369, 399, 402
GlaI GCGC 1 cut(s) 367
GluI GCNGC 3 cut(s) 369, 399, 402
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 25
HhaI GCGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 25
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 34, 266
Hpy188I TCNGA 4 cut(s) 9, 166, 192, 361
Hpy188III TCNNGA 3 cut(s) 14, 53, 275
Hpy8I GTNNAC 2 cut(s) 34, 266
HpyAV CCTTC 3 cut(s) 356, 427, 470
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 2 cut(s) 314, 476
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 2 cut(s) 314, 476
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 91
Lsp1109I GCAGC 3 cut(s) 380, 388, 410
LweI GCATC 2 cut(s) 240, 365
MabI ACCWGGT 1 cut(s) 268
MaeII ACGT 2 cut(s) 314, 476
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 153, 257
MfeI CAATTG 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 201, 225
MnlI CCTC 4 cut(s) 56, 186, 433, 463
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 2 cut(s) 117, 261
MspA1I CMGCKG 3 cut(s) 337, 371, 401
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 261, 270
MunI CAATTG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 2 cut(s) 261, 270
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeI CATATG 1 cut(s) 430
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 23
OliI CACNNNNGTG 1 cut(s) 261
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 3 cut(s) 370, 400, 403
Ppu21I YACGTR 2 cut(s) 315, 477
Psp124BI GAGCTC 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 259, 268
PspGI CCWGG 2 cut(s) 259, 268
PspN4I GGNNCC 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 404
PvuII CAGCTG 3 cut(s) 337, 371, 401
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 2 cut(s) 117, 261
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 3 cut(s) 369, 399, 402
Sau3AI GATC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 261, 270
SduI GDGCHC 1 cut(s) 60
SexAI ACCWGGT 1 cut(s) 268
SfaNI GCATC 2 cut(s) 240, 365
SmiMI CAYNNNNRTG 2 cut(s) 117, 261
SmlI CTYRAG 2 cut(s) 59, 299
SmoI CTYRAG 2 cut(s) 59, 299
SnaBI TACGTA 2 cut(s) 315, 477
Sse9I AATT 2 cut(s) 201, 225
SsiI CCGC 2 cut(s) 396, 467
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 259, 268
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 2 cut(s) 317, 479
TaqI TCGA 2 cut(s) 94, 183
TasI AATT 2 cut(s) 201, 225
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 4 cut(s) 41, 161, 357, 415
TseI GCWGC 3 cut(s) 368, 398, 401
TspDTI ATGAA 1 cut(s) 450
TspRI CASTG 4 cut(s) 41, 161, 357, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.