Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Forward (+)

67949358 .. 67953415

Gene Structure 4058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG419700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCCAATCCCTAACCGCAGAGCCATGGGCCAGGAACTGGAAGAACAAGTCGCGCCGCCGGTCATCCTCCGATGGCAAGATCTGGGCGAGTTGCCGGAAGGCGAGCGGATTATTAAGGCTCCCGAAGACTATACCCCTCCTCGTGGGAAAGGGAAAGGGAAGGGGAAAGGGAAAGGGAACAAGGGGAAAGGGAACCAAGGGAAAGGGAACAAAGGGAAAGTGAAAGCACAGGTAAGTGATGATAAGGAAGGACCACCATTGGCTAATTACATCAAACTGAGTGAGTATTCCTTTGCTTGTAAGATGTGTCCGAATCCAGATTGGCACCGGACTGTTCACTGCCCCAACCTCACTCCTGAGCTCAAGGAAAGGCTAAAAGTAGCAAGAAGCAGGGATCGAAAACTTAAAGCTTTCCACCCTGATGACATGGCTTGTCATATTTGTCTAAAGACAGACCACTGGTCTTCAGAATGCTCATACCTGCTCGAATATCCGAGGGGTGCAATTGTTGGCCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAGGAGATGCCCCACCCTGGTGTGCCTGGTCTTGACTGGAAAGCAAGAGCTATTCTCAAGCCTGCTGTTACCTATCCCAGTATCAAGGAACAGCTGATGGCACTGACACTGGCATCAGAGGGCGCAGCTGATGGCACTGGCAACAGCACAGGTACATCAGAGGCAAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.16

Weight (kDa)

8.89

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccBSI	CCGCTC	1 cut(s)	106
AccII	CGCG	1 cut(s)	53
AciI	CCGC	3 cut(s)	16, 56, 106
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	511
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	700
AfiI	CCNNNNNNNGG	3 cut(s)	37, 143, 563
AhdI	GACNNNNNGTC	1 cut(s)	460
AjnI	CCWGG	3 cut(s)	30, 562, 571
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	5 cut(s)	361, 410, 596, 640, 674
AluI	AGCT	5 cut(s)	361, 410, 596, 640, 674
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	28, 511
ApeKI	GCWGC	1 cut(s)	671
AspLEI	GCGC	2 cut(s)	55, 671
AspS9I	GGNCC	2 cut(s)	28, 251
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	363
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	2 cut(s)	132, 456
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	683
BccI	CCATC	3 cut(s)	66, 637, 671
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	3 cut(s)	32, 564, 573
BfuAI	ACCTGC	1 cut(s)	489
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	56, 672
BlsI	GCNGC	2 cut(s)	57, 673
Bme1390I	CCNGG	3 cut(s)	32, 564, 573
Bme18I	GGWCC	1 cut(s)	251
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	28, 251
BmiI	GGNNCC	3 cut(s)	120, 194, 326
BmrFI	CCNGG	3 cut(s)	32, 564, 573
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	2 cut(s)	543, 668
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	2 cut(s)	132, 456
BplI	GAGNNNNNCTC	2 cut(s)	585, 617
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	347, 587
BsaJI	CCNNGG	4 cut(s)	24, 196, 494, 562
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 143, 563
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	6 cut(s)	42, 464, 587, 624, 660, 688
BseBI	CCWGG	3 cut(s)	32, 564, 573
BseDI	CCNNGG	4 cut(s)	24, 196, 494, 562
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	3 cut(s)	37, 143, 563
BseMII	CTCAG	2 cut(s)	269, 348
BseNI	ACTGG	6 cut(s)	42, 464, 587, 624, 660, 688
BseRI	GAGGAG	2 cut(s)	129, 563
BseXI	GCAGC	1 cut(s)	683
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	30, 513
BshNI	GGYRCC	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	3 cut(s)	59, 95, 328
BslI	CCNNNNNNNGG	3 cut(s)	37, 143, 563
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	30, 513
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	79, 394
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	16, 56, 106
BspANI	GGCC	2 cut(s)	30, 513
BspCNI	CTCAG	2 cut(s)	270, 349
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	3 cut(s)	120, 194, 326
BspMI	ACCTGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	324
BsrBI	CCGCTC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	6 cut(s)	42, 464, 587, 624, 660, 688
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	4 cut(s)	24, 196, 494, 562
BssMI	GATC	2 cut(s)	79, 394
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	24, 196
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	32, 564, 573
Bst4CI	ACNGT	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	104, 609
BstDEI	CTNAG	2 cut(s)	278, 357
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	55, 671
BstKTI	GATC	2 cut(s)	82, 397
BstMBI	GATC	2 cut(s)	79, 394
BstNI	CCWGG	3 cut(s)	32, 564, 573
BstSCI	CCNGG	3 cut(s)	30, 562, 571
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	683
BstV2I	GAAGAC	2 cut(s)	132, 456
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	30, 513
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	5 cut(s)	337, 457, 647, 653, 681
BveI	ACCTGC	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	104, 609
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	2 cut(s)	55, 671
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	28, 251
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	2 cut(s)	25, 427
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	2 cut(s)	278, 357
DpnI	GATC	2 cut(s)	81, 396
DpnII	GATC	2 cut(s)	79, 394
DriI	GACNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	511
Eam1105I	GACNNNNNGTC	1 cut(s)	460
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	24, 196
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	361
EcoRII	CCWGG	3 cut(s)	30, 562, 571
EcoT14I	CCWWGG	2 cut(s)	24, 196
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	24, 196
FaeI	CATG	2 cut(s)	28, 430
FaiI	YATR	5 cut(s)	26, 132, 428, 438, 478
FatI	CATG	2 cut(s)	24, 426
Fnu4HI	GCNGC	2 cut(s)	56, 672
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	56, 672
GlaI	GCGC	2 cut(s)	54, 670
GluI	GCNGC	2 cut(s)	56, 672
HaeIII	GGCC	2 cut(s)	30, 513
HapII	CCGG	3 cut(s)	59, 95, 328
HhaI	GCGC	2 cut(s)	55, 671
Hin1II	CATG	2 cut(s)	28, 430
Hin6I	GCGC	2 cut(s)	53, 669
HinP1I	GCGC	2 cut(s)	53, 669
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	3 cut(s)	59, 95, 328
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	6 cut(s)	71, 312, 469, 495, 664, 706
Hpy188III	TCNNGA	4 cut(s)	122, 317, 356, 578
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	92, 154, 242
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	503
HpyF3I	CTNAG	2 cut(s)	278, 357
Hsp92II	CATG	2 cut(s)	28, 430
HspAI	GCGC	2 cut(s)	53, 669
Kzo9I	GATC	2 cut(s)	79, 394
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	683
LweI	GCATC	2 cut(s)	543, 668
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	2 cut(s)	81, 396
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	2 cut(s)	79, 394
MboII	GAAGA	3 cut(s)	53, 137, 456
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	265, 504, 528
MnlI	CCTC	8 cut(s)	77, 147, 150, 359, 489, 541, 658, 700
MseI	TTAA	2 cut(s)	114, 405
MslI	CAYNNNNRTG	2 cut(s)	420, 564
MspA1I	CMGCKG	2 cut(s)	640, 674
MspI	CCGG	3 cut(s)	59, 95, 328
MspR9I	CCNGG	3 cut(s)	32, 564, 573
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	3 cut(s)	32, 564, 573
MvnI	CGCG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	79, 394
NlaIII	CATG	2 cut(s)	28, 430
NlaIV	GGNNCC	3 cut(s)	120, 194, 326
OliI	CACNNNNGTG	1 cut(s)	564
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	57, 673
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	30, 562, 571
PspGI	CCWGG	3 cut(s)	30, 562, 571
PspN4I	GGNNCC	3 cut(s)	120, 194, 326
PspPI	GGNCC	2 cut(s)	28, 251
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	2 cut(s)	640, 674
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
RseI	CAYNNNNRTG	2 cut(s)	420, 564
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	114, 405
SatI	GCNGC	2 cut(s)	56, 672
Sau3AI	GATC	2 cut(s)	79, 394
Sau96I	GGNCC	2 cut(s)	28, 251
ScrFI	CCNGG	3 cut(s)	32, 564, 573
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	543, 668
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	2 cut(s)	420, 564
SmlI	CTYRAG	2 cut(s)	362, 602
SmoI	CTYRAG	2 cut(s)	362, 602
Sse9I	AATT	3 cut(s)	265, 504, 528
SsiI	CCGC	3 cut(s)	16, 56, 106
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	30, 562, 571
StyI	CCWWGG	2 cut(s)	24, 196
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	397, 486
TasI	AATT	3 cut(s)	265, 504, 528
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	2 cut(s)	114, 405
Tru9I	TTAA	2 cut(s)	114, 405
TscAI	CASTG	5 cut(s)	344, 464, 654, 660, 688
TseI	GCWGC	1 cut(s)	671
TspRI	CASTG	5 cut(s)	344, 464, 654, 660, 688
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.