Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Reverse (-)

59584216 .. 59585699

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGAGATCATCCAAAAAGGGCCAGAAAGTTGAAGAACCATCCGAAGTTGAAGAACCATCCGTGCCACCGGTCATCCTCCGATGGCAAGATCTGAACCGGAGCGATTTGCATGAAACCGAGCTGATTATGATGGCTCCCGAAGACTATACCCCTCCTCGTGGGAAAGGGAAGGGGAAGGGGAAGGGGAAGGGGGAAGGGAAAGCACAGGTGAGCGATGATAAGGCAAAAGGACCACCATTGGTTAATTACATCTTAATGAGTGAATATTTAATGGATTGTAAGATGTGTCGTCCTAATCCAGATTGGCACCGGACTTTTCAGTGCCCCAACCTCACTCCTGAGCTCAAGGAAATGCTAAAAGAAGATAGAAGCAAGTTTGGAACATGTAGGCCTCTTCGCCCTGAGGACATGGGTTGTCATATATGTCTGAAGAGAGACCACTGGCCTATATCATGCCCCTACCAGCTCGTATATCCTCCGGGTGCACCTGTTGGCCCTTTTGCTGAGATAGTTTGTTTGTGTTGTGGTGAGGAGAAACCCCACCCTGGTGAGCCTGGTGTTGACTGGAAAGCAAGAGCCATTCTCAAGATTTCTCCAACTTATCCCAGTTTGAACTCATATGCAGCAGTGGATGCAGCTGATGGCGCAAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.35

Weight (kDa)

6.53

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	161, 548
AflIII	ACRYGT	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	35, 53, 616
AjnI	CCWGG	2 cut(s)	547, 556
AleI	CACNNNNGTG	1 cut(s)	549
AluBI	AGCT	4 cut(s)	124, 346, 469, 641
AluI	AGCT	4 cut(s)	124, 346, 469, 641
Alw21I	GWGCWC	2 cut(s)	348, 490
Alw26I	GTCTC	1 cut(s)	432
Alw44I	GTGCAC	1 cut(s)	486
AoxI	GGCC	4 cut(s)	22, 392, 446, 496
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	626, 638
AsiGI	ACCGGT	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	22, 233, 497
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	3 cut(s)	223, 542, 563
AvaII	GGWCC	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	329, 490
BanI	GGYRCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	348, 490
BbvI	GCAGC	2 cut(s)	638, 650
BccI	CCATC	5 cut(s)	49, 67, 78, 127, 638
BciT130I	CCWGG	2 cut(s)	549, 558
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	432
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	2 cut(s)	627, 639
BlsI	GCNGC	2 cut(s)	628, 640
Bme1390I	CCNGG	3 cut(s)	483, 549, 558
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	22, 233, 497
BmiI	GGNNCC	2 cut(s)	138, 311
BmrFI	CCNGG	3 cut(s)	483, 549, 558
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	570, 602
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	332, 572
BpuMI	CCSGG	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	547
BsaWI	WCCGGW	3 cut(s)	70, 99, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 548
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	449, 572, 609
Bse21I	CCTNAGG	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	549, 558
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	5 cut(s)	11, 41, 59, 75, 640
BseLI	CCNNNNNNNGG	2 cut(s)	161, 548
BseMII	CTCAG	3 cut(s)	333, 396, 498
BseNI	ACTGG	3 cut(s)	449, 572, 609
BseRI	GAGGAG	2 cut(s)	147, 548
BseSI	GKGCMC	2 cut(s)	329, 490
BseXI	GCAGC	2 cut(s)	638, 650
BshFI	GGCC	4 cut(s)	24, 394, 448, 498
BshNI	GGYRCC	1 cut(s)	309
BshTI	ACCGGT	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	348, 490
BsiSI	CCGG	4 cut(s)	71, 100, 313, 482
BslI	CCNNNNNNNGG	2 cut(s)	161, 548
BsmAI	GTCTC	1 cut(s)	432
BsnI	GGCC	4 cut(s)	24, 394, 448, 498
Bso31I	GGTCTC	1 cut(s)	432
Bsp1286I	GDGCHC	3 cut(s)	329, 348, 490
Bsp143I	GATC	2 cut(s)	8, 91
BspANI	GGCC	4 cut(s)	24, 394, 448, 498
BspCNI	CTCAG	3 cut(s)	334, 397, 499
BspLI	GGNNCC	2 cut(s)	138, 311
BspT107I	GGYRCC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	449, 572, 609
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	2 cut(s)	8, 91
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	549, 558
Bst6I	CTCTTC	2 cut(s)	402, 428
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstDEI	CTNAG	3 cut(s)	342, 405, 507
BstF5I	GGATG	5 cut(s)	11, 41, 59, 75, 640
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	2 cut(s)	11, 94
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	2 cut(s)	8, 91
BstMWI	GCNNNNNNNGC	2 cut(s)	635, 647
BstNI	CCWGG	2 cut(s)	549, 558
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	3 cut(s)	481, 547, 556
BstSLI	GKGCMC	2 cut(s)	329, 490
BstV1I	GCAGC	2 cut(s)	638, 650
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	405
BsuRI	GGCC	4 cut(s)	24, 394, 448, 498
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	5 cut(s)	11, 41, 59, 75, 640
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	3 cut(s)	329, 442, 636
CfoI	GCGC	1 cut(s)	650
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	22, 233, 497
CspAI	ACCGGT	1 cut(s)	70
CviAII	CATG	4 cut(s)	113, 387, 412, 456
DdeI	CTNAG	3 cut(s)	342, 405, 507
DpnI	GATC	2 cut(s)	10, 93
DpnII	GATC	2 cut(s)	8, 91
Eam1104I	CTCTTC	2 cut(s)	402, 428
EarI	CTCTTC	2 cut(s)	402, 428
Ecl136II	GAGCTC	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	452
Eco81I	CCTNAGG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	547, 556
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	4 cut(s)	116, 390, 415, 459
FatI	CATG	4 cut(s)	112, 386, 411, 455
FauNDI	CATATG	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	627, 639
FokI	GGATG	4 cut(s)	28, 46, 62, 647
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	2 cut(s)	627, 639
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	2 cut(s)	627, 639
HaeIII	GGCC	4 cut(s)	24, 394, 448, 498
HapII	CCGG	4 cut(s)	71, 100, 313, 482
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	4 cut(s)	116, 390, 415, 459
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HpaII	CCGG	4 cut(s)	71, 100, 313, 482
HphI	GGTGA	3 cut(s)	223, 542, 563
Hpy166II	GTNNAC	2 cut(s)	488, 565
Hpy188I	TCNGA	4 cut(s)	46, 83, 96, 432
Hpy188III	TCNNGA	4 cut(s)	140, 302, 341, 589
Hpy8I	GTNNAC	2 cut(s)	488, 565
HpyAV	CCTTC	5 cut(s)	166, 172, 178, 184, 191
HpyCH4V	TGCA	4 cut(s)	112, 488, 626, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	635, 647
HpyF3I	CTNAG	3 cut(s)	342, 405, 507
Hsp92II	CATG	4 cut(s)	116, 390, 415, 459
HspAI	GCGC	1 cut(s)	648
Kzo9I	GATC	2 cut(s)	8, 91
LmnI	GCTCC	2 cut(s)	102, 142
Lsp1109I	GCAGC	2 cut(s)	638, 650
LweI	GCATC	1 cut(s)	625
MalI	GATC	2 cut(s)	10, 93
MboI	GATC	2 cut(s)	8, 91
MboII	GAAGA	6 cut(s)	47, 65, 155, 377, 389, 445
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	3 cut(s)	329, 348, 490
MluCI	AATT	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	623
MnlI	CCTC	8 cut(s)	89, 165, 168, 344, 400, 405, 489, 526
MseI	TTAA	3 cut(s)	246, 257, 272
MslI	CAYNNNNRTG	2 cut(s)	257, 549
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	4 cut(s)	71, 100, 313, 482
MspR9I	CCNGG	3 cut(s)	483, 549, 558
MvaI	CCWGG	2 cut(s)	549, 558
MwoI	GCNNNNNNNGC	2 cut(s)	635, 647
NciI	CCSGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	2 cut(s)	8, 91
NlaIII	CATG	4 cut(s)	116, 390, 415, 459
NlaIV	GGNNCC	2 cut(s)	138, 311
NspI	RCATGY	1 cut(s)	390
OliI	CACNNNNGTG	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	394
PciI	ACATGT	1 cut(s)	386
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	628, 640
PscI	ACATGT	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	547, 556
PspGI	CCWGG	2 cut(s)	547, 556
PspN4I	GGNNCC	2 cut(s)	138, 311
PspPI	GGNCC	3 cut(s)	22, 233, 497
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	641
RseI	CAYNNNNRTG	2 cut(s)	257, 549
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	246, 257, 272
SatI	GCNGC	2 cut(s)	627, 639
Sau3AI	GATC	2 cut(s)	8, 91
Sau96I	GGNCC	3 cut(s)	22, 233, 497
ScrFI	CCNGG	3 cut(s)	483, 549, 558
SduI	GDGCHC	3 cut(s)	329, 348, 490
SetI	ASST	7 cut(s)	126, 213, 336, 348, 471, 493, 643
SfaNI	GCATC	1 cut(s)	625
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	257, 549
SmlI	CTYRAG	2 cut(s)	347, 587
SmoI	CTYRAG	2 cut(s)	347, 587
Sse9I	AATT	1 cut(s)	247
SseBI	AGGCCT	1 cut(s)	394
SspI	AATATT	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	348
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	3 cut(s)	481, 547, 556
TasI	AATT	1 cut(s)	247
Tru1I	TTAA	3 cut(s)	246, 257, 272
Tru9I	TTAA	3 cut(s)	246, 257, 272
TscAI	CASTG	3 cut(s)	329, 449, 636
TseI	GCWGC	2 cut(s)	626, 638
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	3 cut(s)	329, 449, 636
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	233
XceI	RCATGY	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.