Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002864

Physical Location & Seq

Genomic Coordinates Reverse (-)

67398304 .. 67407663

Gene Structure 9360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTGTCCTAATCCAGATTGGCACCATACTGTTCACTGCCCCAACCTCACTCCTGCGCTCAAGGAAAGGCTAAAAGTAGCAAGAAGCAGCAGTCGAACGAAGGCTTTCCACCCTGATGACATGGCTTGTCATATTTGTCTAAAGATAGACCACTGGTCTTCAAAATGCTCTTACCTGCTCAAATATCAGAGGGGTGCAATTGTTGGCCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAGGAGATGCCCCACCCTGGTGTGCCTGGTCTTGACTGGAAAGCAAGAGTTATTCTCAAGCATGCTGTTACTTATCCCAGTATCAAGGAGCAGCTGATGGAACTGACACTGGCATCAGAGGGCGCAGCTGATGGCACTGGCAACAACGCAAGTACATCAGAGGCCGCAACTACTGGCACTGCCACCTTCACCTCTACATATGATGAAAACTTGCTTTGTTCAACCAGCCTTTTTGCGGAGGATACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.75

Weight (kDa)

6.43

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34360 FvH4_3g34361 FvH4_3g34390 FvH4_3g34400 FvH4_5g39301 FvH4_5g39331 FvH4_5g39360
malus_domestica	MD08G1121500.v1.1 MD09G1070700.v1.1 MD10G1037200.v1.1
pyrus_communis	pycom09g03510
rosa_chinensis	RchiOBHm_Chr5g0057251 RchiOBHm_Chr5g0061971
rosa_laevigata	RLG00000035050 RLG00000035523
rosa_roxburghii	Rroxscaffold_1G00018750 Rroxscaffold_2G00125090 Rroxscaffold_3G00245290 Rroxscaffold_4G00294330 Rroxscaffold_5G00365650 Rroxscaffold_7G00195750
rosa_rugosa	Rorug05G0345200 Rorug05G0385100
rosa_samantha	Rh3DG275600 Rh4CG299700 Rh5BG000100 Rh5BG379200 Rh5BG419700 Rh5CG444000 Rh5DG391900 Rh5DG433400 Rh5DG434100 Rh5DG435100 Rh6BG231900 Rh7CG508400
rosa_wichuraiana	Rw0G004480 Rw5G034600 Rw5G038150 Rw5G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	21
AciI	CCGC	2 cut(s)	405, 476
AcoI	YGGCCR	1 cut(s)	205
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	2 cut(s)	257, 475
AgsI	TTSAA	2 cut(s)	162, 462
AhdI	GACNNNNNGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	256, 265
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	334, 368
AluI	AGCT	2 cut(s)	334, 368
AoxI	GGCC	2 cut(s)	205, 402
ApeKI	GCWGC	3 cut(s)	87, 331, 365
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	58, 365
AsuHPI	GGTGA	2 cut(s)	251, 421
BanI	GGYRCC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	99, 343, 377
BccI	CCATC	2 cut(s)	331, 365
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	258, 267
BciVI	GTATCC	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	4 cut(s)	88, 332, 366, 405
BlsI	GCNGC	4 cut(s)	89, 333, 367, 406
Bme1390I	CCNGG	2 cut(s)	258, 267
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	258, 267
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	237, 362
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuEI	CTTGAG	2 cut(s)	44, 281
BsaAI	YACGTR	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 475
Bse1I	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 418
BseBI	CCWGG	2 cut(s)	258, 267
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	257, 475
BseNI	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 418
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	99, 343, 377
BshFI	GGCC	2 cut(s)	207, 404
BshNI	GGYRCC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	257, 475
BsnI	GGCC	2 cut(s)	207, 404
BspACI	CCGC	2 cut(s)	405, 476
BspANI	GGCC	2 cut(s)	207, 404
BspLI	GGNNCC	1 cut(s)	23
BspMI	ACCTGC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	21
BsrI	ACTGG	6 cut(s)	158, 281, 318, 354, 382, 418
BssECI	CCNNGG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	258, 267
Bst4CI	ACNGT	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	58, 365
BstNI	CCWGG	2 cut(s)	258, 267
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	256, 265
BstSNI	TACGTA	1 cut(s)	486
BstV1I	GCAGC	3 cut(s)	99, 343, 377
BstV2I	GAAGAC	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	207, 404
BtsI	GCAGTG	2 cut(s)	34, 417
BtsIMutI	CAGTG	5 cut(s)	34, 151, 347, 375, 417
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	2 cut(s)	58, 365
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	2 cut(s)	121, 302
CviJI	RGCY	8 cut(s)	70, 104, 125, 207, 334, 368, 404, 468
CviKI_1	RGCY	8 cut(s)	70, 104, 125, 207, 334, 368, 404, 468
CviQI	GTAC	1 cut(s)	393
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	154
Eco105I	TACGTA	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	256, 265
FaeI	CATG	2 cut(s)	124, 305
FaiI	YATR	6 cut(s)	27, 122, 132, 303, 439, 441
FatI	CATG	2 cut(s)	120, 301
FauNDI	CATATG	1 cut(s)	439
Fnu4HI	GCNGC	4 cut(s)	88, 332, 366, 405
Fsp4HI	GCNGC	4 cut(s)	88, 332, 366, 405
GlaI	GCGC	2 cut(s)	57, 364
GluI	GCNGC	4 cut(s)	88, 332, 366, 405
HaeIII	GGCC	2 cut(s)	207, 404
HhaI	GCGC	2 cut(s)	58, 365
Hin1II	CATG	2 cut(s)	124, 305
Hin6I	GCGC	2 cut(s)	56, 363
HinP1I	GCGC	2 cut(s)	56, 363
HphI	GGTGA	2 cut(s)	251, 421
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	189, 358, 400
Hpy188III	TCNNGA	2 cut(s)	14, 272
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	94, 436
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	2 cut(s)	124, 305
HspAI	GCGC	2 cut(s)	56, 363
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	3 cut(s)	99, 343, 377
LweI	GCATC	2 cut(s)	237, 362
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	150
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	2 cut(s)	198, 222
MnlI	CCTC	7 cut(s)	56, 183, 235, 352, 394, 442, 472
MroXI	GAANNNNTTC	1 cut(s)	104
MslI	CAYNNNNRTG	2 cut(s)	114, 258
MspA1I	CMGCKG	2 cut(s)	334, 368
MspR9I	CCNGG	2 cut(s)	258, 267
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	2 cut(s)	258, 267
NdeI	CATATG	1 cut(s)	439
NlaIII	CATG	2 cut(s)	124, 305
NlaIV	GGNNCC	1 cut(s)	23
NspI	RCATGY	1 cut(s)	305
OliI	CACNNNNGTG	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	89, 333, 367, 406
Ppu21I	YACGTR	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	256, 265
PspGI	CCWGG	2 cut(s)	256, 265
PspN4I	GGNNCC	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	334, 368
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	2 cut(s)	114, 258
SatI	GCNGC	4 cut(s)	88, 332, 366, 405
ScrFI	CCNGG	2 cut(s)	258, 267
SetI	ASST	7 cut(s)	48, 177, 336, 370, 428, 434, 488
SfaNI	GCATC	2 cut(s)	237, 362
SmiMI	CAYNNNNRTG	2 cut(s)	114, 258
SmlI	CTYRAG	2 cut(s)	59, 296
SmoI	CTYRAG	2 cut(s)	59, 296
SnaBI	TACGTA	1 cut(s)	486
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	2 cut(s)	198, 222
SsiI	CCGC	2 cut(s)	405, 476
StyD4I	CCNGG	2 cut(s)	256, 265
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	198, 222
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	1 cut(s)	407
TscAI	CASTG	5 cut(s)	41, 158, 354, 382, 424
TseI	GCWGC	3 cut(s)	87, 331, 365
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	5 cut(s)	41, 158, 354, 382, 424
XceI	RCATGY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.