FvH4_3g36550

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000624
Physical Location & Seq
Forward (+)
31313792 .. 31314652
861 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36550.t1

Sequence Viewer

Length: 861 bp
ATGAACTCTGCTCTGTCTTCGAGCTTTAGCCCTGTAGGAGATGATGGTGAGTTTTCTAACACTGTGATCAAGCACATAAATCAGGTGCTTATGGAGGAGGACATGGAGCCAACACCATGTCTGTTCCCTGATCGTTTGGTTCTTCAAGCCACTGAGGAGTCTCTTTATGAGATTATTGGAGGAGGGAAGTGCTCAACTTCCCAAGACCAAAACCCTCTTTGGGTTGATCAAAATGAGTATGGAAATGAGATGGTGGGTTCTTATAGGAGTGAGCTTATGGTTCCTGATGAGGTTAGTAAGAAGGAATTGTTAGTGCAATTTGACCGAGGGGCAGAGGACGGTAGTAAGTTTCTTCCTAGAGGTCAGTTGATTACGGCGGAGGACAACAAGCCGTATAATGTGGCGAATAGCAAGGCAGGAAATGTGGTTGTTACAACCCAGAAGAATGGAAGTGAGCATGTCCGTGTTGGTTCAAGAGGAAAGAATAGTCATCTGAGGGAGGAGATAGAGTTGGAGGATGGGAGGAATGACAAGCAATCTGTGGTTTATGTGGATGATGAGGAGGGTGAGCTGTCTGATAGTTTCGGCAAGGCGTTGCTCAGCGGTAAGGCTGTTGAAAGTAAAGAGGATCAAGTCTGTCAGAATGGAGCTAACAATGGCCAGCAGCAGGATGTGCTAGTCAGTCAGAAGGCTTGTGGCATGAAACGAGGCAACAAGAAGGAAGTGATAGATTTGAGGCGTCTTCTGATTTCATGTGCAGAAGCTGTTGCTGTTGATGATCGATGGACTGCTAGTGAGCTACTAAAGCAAATTAGGTTATGCGATGAAAGGTGGTTTCGACGTGGATGTTGCGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

287

Amino Acids

31.79

Weight (kDa)

4.78

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 377, 603
AclWI GGATC 1 cut(s) 636
AcoI YGGCCR 1 cut(s) 658
AcyI GRCGYC 1 cut(s) 739
AfiI CCNNNNNNNGG 2 cut(s) 220, 667
AgsI TTSAA 3 cut(s) 146, 474, 617
AjiI CACGTC 1 cut(s) 842
AluBI AGCT 6 cut(s) 24, 274, 571, 650, 764, 799
AluI AGCT 6 cut(s) 24, 274, 571, 650, 764, 799
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 636
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 1 cut(s) 658
ApeKI GCWGC 1 cut(s) 664
AsuHPI GGTGA 2 cut(s) 59, 578
BalI TGGCCA 1 cut(s) 660
BbsI GAAGAC 2 cut(s) 9, 734
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 676
BccI CCATC 4 cut(s) 38, 244, 512, 777
BceAI ACGGC 2 cut(s) 376, 390
BclI TGATCA 2 cut(s) 66, 226
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 3 cut(s) 357, 677, 792
BfmI CTRYAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 665
BlpI GCTNAGC 1 cut(s) 599
BlsI GCNGC 1 cut(s) 666
BmgBI CACGTC 1 cut(s) 842
BmiI GGNNCC 2 cut(s) 108, 282
BpiI GAAGAC 2 cut(s) 9, 734
Bpu1102I GCTNAGC 1 cut(s) 599
Bsa29I ATCGAT 1 cut(s) 781
BsaHI GRCGYC 1 cut(s) 739
BsaJI CCNNGG 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 667
BseCI ATCGAT 1 cut(s) 781
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 4 cut(s) 523, 559, 676, 851
BseLI CCNNNNNNNGG 2 cut(s) 220, 667
BseMII CTCAG 3 cut(s) 144, 485, 613
BseRI GAGGAG 5 cut(s) 110, 170, 195, 515, 575
BseXI GCAGC 1 cut(s) 676
BsgI GTGCAG 1 cut(s) 777
BshFI GGCC 1 cut(s) 660
BshVI ATCGAT 1 cut(s) 781
BsiHKAI GWGCWC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 220, 667
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 1 cut(s) 660
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 5 cut(s) 66, 130, 226, 628, 778
Bsp1720I GCTNAGC 1 cut(s) 599
BspACI CCGC 2 cut(s) 377, 603
BspANI GGCC 1 cut(s) 660
BspCNI CTCAG 3 cut(s) 145, 486, 612
BspDI ATCGAT 1 cut(s) 781
BspLI GGNNCC 2 cut(s) 108, 282
BspPI GGATC 1 cut(s) 636
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 5 cut(s) 66, 130, 226, 628, 778
BssNI GRCGYC 1 cut(s) 739
Bst4CI ACNGT 2 cut(s) 64, 341
BstACI GRCGYC 1 cut(s) 739
BstAPI GCANNNNNTGC 1 cut(s) 673
BstC8I GCNNGC 1 cut(s) 662
BstDEI CTNAG 3 cut(s) 153, 494, 599
BstF5I GGATG 4 cut(s) 523, 559, 676, 851
BstKTI GATC 5 cut(s) 69, 133, 229, 631, 781
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 5 cut(s) 66, 130, 226, 628, 778
BstMWI GCNNNNNNNGC 2 cut(s) 673, 805
BstNSI RCATGY 1 cut(s) 461
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 676
BstV2I GAAGAC 2 cut(s) 9, 734
BstXI CCANNNNNNTGG 1 cut(s) 446
Bsu15I ATCGAT 1 cut(s) 781
BsuRI GGCC 1 cut(s) 660
BsuTUI ATCGAT 1 cut(s) 781
BtgZI GCGATG 1 cut(s) 837
BtrI CACGTC 1 cut(s) 842
BtsCI GGATG 4 cut(s) 523, 559, 676, 851
BtsIMutI CAGTG 2 cut(s) 60, 150
Cac8I GCNNGC 1 cut(s) 662
CaiI CAGNNNCTG 1 cut(s) 764
ClaI ATCGAT 1 cut(s) 781
CseI GACGC 1 cut(s) 728
CviAII CATG 5 cut(s) 103, 117, 458, 700, 753
DdeI CTNAG 3 cut(s) 153, 494, 599
DpnI GATC 5 cut(s) 68, 132, 228, 630, 780
DpnII GATC 5 cut(s) 66, 130, 226, 628, 778
EaeI YGGCCR 1 cut(s) 658
EciI GGCGGA 1 cut(s) 392
FaeI CATG 5 cut(s) 106, 120, 461, 703, 756
FatI CATG 5 cut(s) 102, 116, 457, 699, 752
FbaI TGATCA 2 cut(s) 66, 226
Fnu4HI GCNGC 1 cut(s) 665
FokI GGATG 3 cut(s) 530, 566, 683
Fsp4HI GCNGC 1 cut(s) 665
FspBI CTAG 3 cut(s) 357, 677, 792
GluI GCNGC 1 cut(s) 665
HaeIII GGCC 1 cut(s) 660
HgaI GACGC 1 cut(s) 728
Hin1I GRCGYC 1 cut(s) 739
Hin1II CATG 5 cut(s) 106, 120, 461, 703, 756
HinfI GANTC 1 cut(s) 158
HphI GGTGA 2 cut(s) 59, 578
Hpy188I TCNGA 5 cut(s) 495, 577, 642, 687, 747
Hpy188III TCNNGA 2 cut(s) 284, 474
Hpy99I CGWCG 1 cut(s) 843
HpyAV CCTTC 3 cut(s) 295, 682, 712
HpyCH4III ACNGT 2 cut(s) 64, 341
HpyCH4IV ACGT 1 cut(s) 841
HpyCH4V TGCA 2 cut(s) 316, 758
HpyF10VI GCNNNNNNNGC 2 cut(s) 673, 805
HpyF3I CTNAG 3 cut(s) 153, 494, 599
HpySE526I ACGT 1 cut(s) 841
Hsp92I GRCGYC 1 cut(s) 739
Hsp92II CATG 5 cut(s) 106, 120, 461, 703, 756
Ksp22I TGATCA 2 cut(s) 66, 226
Kzo9I GATC 5 cut(s) 66, 130, 226, 628, 778
LmnI GCTCC 2 cut(s) 106, 647
LpnPI CCDG 8 cut(s) 45, 68, 141, 297, 402, 452, 653, 674
Lsp1109I GCAGC 1 cut(s) 676
MaeI CTAG 3 cut(s) 357, 677, 792
MaeII ACGT 1 cut(s) 841
MaeIII GTNAC 1 cut(s) 430
MalI GATC 5 cut(s) 68, 132, 228, 630, 780
MboI GATC 5 cut(s) 66, 130, 226, 628, 778
MboII GAAGA 5 cut(s) 9, 134, 344, 454, 734
MhlI GDGCHC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 3 cut(s) 305, 317, 810
MluNI TGGCCA 1 cut(s) 660
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 492
Mox20I TGGCCA 1 cut(s) 660
MscI TGGCCA 1 cut(s) 660
MslI CAYNNNNRTG 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 603
MwoI GCNNNNNNNGC 2 cut(s) 673, 805
NdeII GATC 5 cut(s) 66, 130, 226, 628, 778
NlaIII CATG 5 cut(s) 106, 120, 461, 703, 756
NlaIV GGNNCC 2 cut(s) 108, 282
NspI RCATGY 1 cut(s) 461
PkrI GCNGC 1 cut(s) 666
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 108, 282
PstNI CAGNNNCTG 1 cut(s) 764
RseI CAYNNNNRTG 1 cut(s) 462
SatI GCNGC 1 cut(s) 665
Sau3AI GATC 5 cut(s) 66, 130, 226, 628, 778
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 3 cut(s) 305, 317, 810
SsiI CCGC 2 cut(s) 377, 603
SspMI CTAG 3 cut(s) 357, 677, 792
TaaI ACNGT 2 cut(s) 64, 341
TaiI ACGT 1 cut(s) 844
TaqI TCGA 3 cut(s) 20, 781, 838
TaqII GACCGA 1 cut(s) 339
TasI AATT 3 cut(s) 305, 317, 810
TscAI CASTG 2 cut(s) 67, 157
TseI GCWGC 1 cut(s) 664
TspDTI ATGAA 4 cut(s) 17, 716, 741, 840
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 2 cut(s) 67, 157
XceI RCATGY 1 cut(s) 461
XspI CTAG 3 cut(s) 357, 677, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.