Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000624

Physical Location & Seq

Genomic Coordinates Forward (+)

65146872 .. 65148179

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG467300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGTTCCATGACCCTTTGGCTCTTCAAGCCACTGAGAAGTCTCTTTATGAGGTTATTGGACGGAAGTACCCACCTTCCCAAGACCAAAACCGTGCTGATCAAAATGTGCATGGAAATGGGAATGGGAATGGGATGGTGGGTTGTGAGCTTATGGTTCCTGATGTAATTTGTAAGAATGAATTGTTAGTGCAATTTAACCGAGGGGCAGAGGAGGGTAGTAAGTTTCTTCCTAGACATCAATTGATTAGTGCGGAGGGTGACAAGCCTTATGCTGTGGCGGATAGAAAGGCCGGAGATGTGGTAGTTACGACCCAGAAGAATGGGAGTGAGCATTTTCGTGTTGGTTCCAGAGGAAAGAAAAATCATCAAAGGGAAGATATAGATTTGGAGGATGGGAGGAGCAACAAGCAATCGGCGGTTTATATGGATGGTGAGGAGGGTGAGCTGTCTGATATTTTTGATAAGGTGTTGCTCTGCAAGCCTATCATGAGTAAAGACGATATATTCAGTCAGAATGGAGCAAACAATGGCTTGCAGCAGGATGGGCTATCTGTTGGAATTGGTAATGGGAAGGTTTGTGGCAGGAATCAAGGCAACAAGAAGGAAGTGGTAGATTTGAGGGTTCTTCTGATTTCATGTGCAGAAGCTCTATCTGTTGATGACCGCGAGACTGCTAGTGAGCTACTAAAGCAGATTATGCAGCACTCTTCCCCATTTGGTGATTGTACTCAGAGGTTGGCTCATTGCTTTGCAAATGCTCTTGAAGCGCGGTTGGCTGGCACAGGAACTCAAATATATACTGCTTTAACTACTAAACGAATGTCAGCTGCTGATTCGCTGAAGTTTTACCAAGCTTATATTGCAGTCTGCCCGTTCATGAAGTTGTTGATGATCTTTGCAAACGATATGATTTTAAAAGCTGCTAAGAAAGCAGAAACACTTCATATAATAGATTTTGGTATCCTTTATGGTTTTCAATGGCCTGCTCTCATTCATTGCCTTTCAAGAAGACCTGGTGGACCTCCGAAACTACGCATTACAGGGGTAGAGCTTCCCTCTAGTGGTTTTCGACCAGAAGAAGGAGTCCAAGAGACAGGGCATCGCTTGGCAAAGTATTGTAGGCGATTTAATGTTCATTTTGAGTACTATGGCATAGCCAAAAAATGGGAAACTCTCCAATTTGATGACCTTAGAGTTCAAAGAAATGAGGTGCTTGCTGTTAATTGTCTGTGCCGATTTAAGTACCTCCTTGATGAGACAGTTGTGGCAAACAGTCCAAGAGATACTGTTCTAAATTTAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

435

Amino Acids

48.42

Weight (kDa)

7.14

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	207 - 433	2.3e-72	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07530 AT2G29060 AT2G29060
fragaria_vesca	FvH4_3g36540 FvH4_3g36550 FvH4_3g36570 FvH4_3g36580 FvH4_3g36630 FvH4_3g36641 FvH4_3g36660 FvH4_3g36660 FvH4_3g36661 FvH4_5g17360
malus_domestica	MD03G1089800.v1.1 MD11G1099100.v1.1
prunus_persica	Prupe.6G074000_v2.0.a1
pyrus_communis	pycom03g07140 pycom11g08330
rosa_chinensis	RchiOBHm_Chr5g0065461 RchiOBHm_Chr5g0065481 RchiOBHm_Chr5g0065491 RchiOBHm_Chr5g0065511 RchiOBHm_Chr5g0065531 RchiOBHm_Chr5g0065541 RchiOBHm_Chr5g0065561
rosa_laevigata	RLG00000035789 RLG00000035792 RLG00000035794 RLG00000035795 RLG00000035796 RLG00000035797
rosa_multiflora	Rmu_co8062944.1_g000001 Rmu_co8409941.1_g000001 Rmu_sc0001010.1_g000064 Rmu_sc0001010.1_g000077 Rmu_sc0001010.1_g000086 Rmu_sc0001010.1_g000088
rosa_roxburghii	Rroxscaffold_1G00015650 Rroxscaffold_1G00015680 Rroxscaffold_1G00015730 Rroxscaffold_1G00015750
rosa_rugosa	Rorug05G0372200 Rorug05G0372300.1 Rorug05G0372400 Rorug05G0372500
rosa_samantha	Rh5AG429900 Rh5AG430000 Rh5AG430400 Rh5AG430500 Rh5AG430600 Rh5BG445100 Rh5BG445400 Rh5BG445900 Rh5BG446200 Rh5BG446300 Rh5BG446500 Rh5BG446600 Rh5CG467300 Rh5CG467600 Rh5CG467900 Rh5CG468200 Rh5CG468300 Rh5CG468500 Rh5CG468600 Rh5DG457500 Rh5DG457700 Rh5DG457800 Rh5DG457900 Rh5DG458300 Rh5DG458600 Rh5DG458700 Rh5DG459000 Rh5DG459200
rosa_wichuraiana	Rw5G040340 Rw5G040350 Rw5G040360 Rw5G040370 Rw5G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1164
AccII	CGCG	2 cut(s)	666, 769
AciI	CCGC	5 cut(s)	251, 278, 416, 664, 769
AcsI	RAATTY	2 cut(s)	1294, 1302
AcuI	CTGAAG	1 cut(s)	860
AfaI	GTAC	4 cut(s)	68, 727, 1145, 1244
AfiI	CCNNNNNNNGG	3 cut(s)	1061, 1079, 1164
AgsI	TTSAA	5 cut(s)	26, 764, 977, 1005, 1199
AjnI	CCWGG	1 cut(s)	1012
AluBI	AGCT	8 cut(s)	148, 445, 647, 682, 827, 854, 920, 1051
AluI	AGCT	8 cut(s)	148, 445, 647, 682, 827, 854, 920, 1051
Alw26I	GTCTC	4 cut(s)	45, 662, 1085, 1250
AlwNI	CAGNNNCTG	1 cut(s)	830
AoxI	GGCC	2 cut(s)	288, 980
ApeKI	GCWGC	4 cut(s)	535, 700, 827, 920
ApoI	RAATTY	2 cut(s)	1294, 1302
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	1 cut(s)	1019
AsuHPI	GGTGA	4 cut(s)	269, 443, 452, 731
AvaII	GGWCC	1 cut(s)	1019
BaeI	ACNNNNGTAYC	2 cut(s)	50, 83
BbsI	GAAGAC	1 cut(s)	1015
BbvI	GCAGC	4 cut(s)	547, 712, 814, 907
BccI	CCATC	4 cut(s)	127, 386, 422, 536
BciT130I	CCWGG	1 cut(s)	1014
BciVI	GTATCC	1 cut(s)	971
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	4 cut(s)	45, 662, 1085, 1250
BfaI	CTAG	3 cut(s)	231, 675, 1059
BfuI	GTATCC	1 cut(s)	971
BisI	GCNGC	4 cut(s)	536, 701, 828, 921
BlsI	GCNGC	4 cut(s)	537, 702, 829, 922
BmcAI	AGTACT	1 cut(s)	1145
Bme1390I	CCNGG	1 cut(s)	1014
Bme18I	GGWCC	1 cut(s)	1019
BmgT120I	GGNCC	1 cut(s)	1019
BmiI	GGNNCC	2 cut(s)	156, 346
BmrFI	CCNGG	1 cut(s)	1014
BmsI	GCATC	1 cut(s)	1108
BpiI	GAAGAC	1 cut(s)	1015
BplI	GAGNNNNNCTC	4 cut(s)	724, 756, 1040, 1072
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	3 cut(s)	1061, 1079, 1164
Bse3DI	GCAATG	2 cut(s)	742, 994
BseBI	CCWGG	1 cut(s)	1014
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	4 cut(s)	138, 397, 433, 547
BseLI	CCNNNNNNNGG	3 cut(s)	1061, 1079, 1164
BseMI	GCAATG	2 cut(s)	742, 994
BseMII	CTCAG	2 cut(s)	24, 743
BseRI	GAGGAG	3 cut(s)	224, 412, 449
BseXI	GCAGC	4 cut(s)	547, 712, 814, 907
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	2 cut(s)	666, 769
BshFI	GGCC	2 cut(s)	290, 982
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	1061, 1079, 1164
BsmAI	GTCTC	4 cut(s)	45, 662, 1085, 1250
BsnI	GGCC	2 cut(s)	290, 982
Bsp143I	GATC	2 cut(s)	97, 891
BspACI	CCGC	5 cut(s)	251, 278, 416, 664, 769
BspANI	GGCC	2 cut(s)	290, 982
BspCNI	CTCAG	2 cut(s)	25, 742
BspFNI	CGCG	2 cut(s)	666, 769
BspHI	TCATGA	2 cut(s)	486, 876
BspLI	GGNNCC	2 cut(s)	156, 346
BspQI	GCTCTTC	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	742, 994
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	97, 891
Bst2UI	CCWGG	1 cut(s)	1014
Bst4CI	ACNGT	4 cut(s)	92, 1261, 1274, 1288
Bst6I	CTCTTC	2 cut(s)	27, 712
BstAPI	GCANNNNNTGC	1 cut(s)	697
BstC8I	GCNNGC	5 cut(s)	479, 533, 778, 984, 1215
BstDEI	CTNAG	4 cut(s)	33, 729, 924, 1190
BstF5I	GGATG	4 cut(s)	138, 397, 433, 547
BstFNI	CGCG	2 cut(s)	666, 769
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	2 cut(s)	100, 894
BstMAI	GTCTC	4 cut(s)	45, 662, 1085, 1250
BstMBI	GATC	2 cut(s)	97, 891
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 478, 544, 688, 697, 764, 773, 860, 929
BstNI	CCWGG	1 cut(s)	1014
BstSCI	CCNGG	1 cut(s)	1012
BstUI	CGCG	2 cut(s)	666, 769
BstV1I	GCAGC	4 cut(s)	547, 712, 814, 907
BstV2I	GAAGAC	1 cut(s)	1015
BstXI	CCANNNNNNTGG	1 cut(s)	320
BsuI	GTATCC	1 cut(s)	971
BsuRI	GGCC	2 cut(s)	290, 982
BtgZI	GCGATG	1 cut(s)	1085
BtsCI	GGATG	4 cut(s)	138, 397, 433, 547
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	5 cut(s)	479, 533, 778, 984, 1215
CaiI	CAGNNNCTG	1 cut(s)	830
CciI	TCATGA	2 cut(s)	486, 876
CfoI	GCGC	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	1019
CsiI	ACCWGGT	1 cut(s)	1012
Csp6I	GTAC	4 cut(s)	67, 726, 1144, 1243
CviAII	CATG	5 cut(s)	8, 110, 487, 636, 877
CviQI	GTAC	4 cut(s)	67, 726, 1144, 1243
DdeI	CTNAG	4 cut(s)	33, 729, 924, 1190
DpnI	GATC	2 cut(s)	99, 893
DpnII	GATC	2 cut(s)	97, 891
DraI	TTTAAA	1 cut(s)	915
Eam1104I	CTCTTC	2 cut(s)	27, 712
EarI	CTCTTC	2 cut(s)	27, 712
EciI	GGCGGA	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	1019
Eco57I	CTGAAG	1 cut(s)	860
EcoRII	CCWGG	1 cut(s)	1012
FaeI	CATG	5 cut(s)	11, 113, 490, 639, 880
FatI	CATG	5 cut(s)	7, 109, 486, 635, 876
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	536, 701, 828, 921
FokI	GGATG	4 cut(s)	145, 404, 440, 554
Fsp4HI	GCNGC	4 cut(s)	536, 701, 828, 921
FspBI	CTAG	3 cut(s)	231, 675, 1059
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	4 cut(s)	536, 701, 828, 921
HaeIII	GGCC	2 cut(s)	290, 982
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	769
Hin1II	CATG	5 cut(s)	11, 113, 490, 639, 880
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HindIII	AAGCTT	1 cut(s)	852
HinfI	GANTC	3 cut(s)	586, 833, 1083
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	4 cut(s)	269, 443, 452, 731
Hpy166II	GTNNAC	1 cut(s)	1019
Hpy188I	TCNGA	5 cut(s)	451, 513, 630, 732, 1026
Hpy188III	TCNNGA	6 cut(s)	158, 348, 487, 761, 877, 1005
Hpy8I	GTNNAC	1 cut(s)	1019
HpyAV	CCTTC	4 cut(s)	84, 565, 595, 1073
HpyCH4III	ACNGT	4 cut(s)	92, 1261, 1274, 1288
HpyCH4V	TGCA	9 cut(s)	109, 190, 477, 535, 641, 700, 752, 863, 899
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 478, 544, 688, 697, 764, 773, 860, 929
HpyF3I	CTNAG	4 cut(s)	33, 729, 924, 1190
Hsp92II	CATG	5 cut(s)	11, 113, 490, 639, 880
HspAI	GCGC	1 cut(s)	767
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 891
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	399, 518
Lsp1109I	GCAGC	4 cut(s)	547, 712, 814, 907
LweI	GCATC	1 cut(s)	1108
MabI	ACCWGGT	1 cut(s)	1012
MaeI	CTAG	3 cut(s)	231, 675, 1059
MaeIII	GTNAC	2 cut(s)	257, 304
MalI	GATC	2 cut(s)	99, 893
MboI	GATC	2 cut(s)	97, 891
MboII	GAAGA	8 cut(s)	14, 218, 328, 386, 617, 699, 1020, 1088
MfeI	CAATTG	1 cut(s)	239
MluCI	AATT	9 cut(s)	165, 179, 191, 239, 558, 1178, 1222, 1294, 1302
MlyI	GAGTC	1 cut(s)	1092
MmeI	TCCRAC	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	6 cut(s)	195, 806, 914, 1128, 1221, 1239
MslI	CAYNNNNRTG	2 cut(s)	114, 336
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	1014
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	1014
MvnI	CGCG	2 cut(s)	666, 769
MwoI	GCNNNNNNNGC	9 cut(s)	26, 478, 544, 688, 697, 764, 773, 860, 929
NdeII	GATC	2 cut(s)	97, 891
NlaIII	CATG	5 cut(s)	11, 113, 490, 639, 880
NlaIV	GGNNCC	2 cut(s)	156, 346
NmuCI	GTSAC	1 cut(s)	257
PagI	TCATGA	2 cut(s)	486, 876
PciSI	GCTCTTC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	586, 833
PflMI	CCANNNNNTGG	1 cut(s)	1164
PkrI	GCNGC	4 cut(s)	537, 702, 829, 922
PleI	GAGTC	1 cut(s)	1091
PpsI	GAGTC	1 cut(s)	1091
Psp6I	CCWGG	1 cut(s)	1012
PspGI	CCWGG	1 cut(s)	1012
PspN4I	GGNNCC	2 cut(s)	156, 346
PspPI	GGNCC	1 cut(s)	1019
PstNI	CAGNNNCTG	1 cut(s)	830
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	4 cut(s)	68, 727, 1145, 1244
RsaNI	GTAC	4 cut(s)	67, 726, 1144, 1243
RseI	CAYNNNNRTG	2 cut(s)	114, 336
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	6 cut(s)	195, 806, 914, 1128, 1221, 1239
SatI	GCNGC	4 cut(s)	536, 701, 828, 921
Sau3AI	GATC	2 cut(s)	97, 891
Sau96I	GGNCC	1 cut(s)	1019
ScaI	AGTACT	1 cut(s)	1145
SchI	GAGTC	1 cut(s)	1092
ScrFI	CCNGG	1 cut(s)	1014
SexAI	ACCWGGT	1 cut(s)	1012
SfaNI	GCATC	1 cut(s)	1108
SinI	GGWCC	1 cut(s)	1019
SmiMI	CAYNNNNRTG	2 cut(s)	114, 336
Sse9I	AATT	9 cut(s)	165, 179, 191, 239, 558, 1178, 1222, 1294, 1302
SsiI	CCGC	5 cut(s)	251, 278, 416, 664, 769
SspMI	CTAG	3 cut(s)	231, 675, 1059
StyD4I	CCNGG	1 cut(s)	1012
TaaI	ACNGT	4 cut(s)	92, 1261, 1274, 1288
TaqI	TCGA	1 cut(s)	1069
TasI	AATT	9 cut(s)	165, 179, 191, 239, 558, 1178, 1222, 1294, 1302
TatI	WGTACW	2 cut(s)	725, 1143
TfiI	GAWTC	2 cut(s)	586, 833
Tru1I	TTAA	6 cut(s)	195, 806, 914, 1128, 1221, 1239
Tru9I	TTAA	6 cut(s)	195, 806, 914, 1128, 1221, 1239
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	4 cut(s)	535, 700, 827, 920
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	7 cut(s)	192, 624, 865, 893, 932, 983, 1124
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	1164
VpaK11BI	GGWCC	1 cut(s)	1019
XapI	RAATTY	2 cut(s)	1294, 1302
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	3 cut(s)	231, 675, 1059
ZrmI	AGTACT	1 cut(s)	1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.