Rh5DG457700

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
72775122 .. 72775562
441 bp
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UTR
Exon/CDS
Intron
Rh5DG457700.1

Sequence Viewer

Length: 441 bp
ATGGTTCCTGATGTAATTTGTAAGAATGAATTGTTAGTGCAATTTAACCGAGGGGCAGAGGAGGGTAGTAAGTTTCTTCCTAGACATCAATTGATTAGTGCGGAGGGTATCAAGCCTTATGCTGTGGCGGATAGAAAGGCCGGAGATGTGGTAGTTACGACCCAGAAGAATGGGAGTGAGCATTTTCGTGTTGGTTCCAGAGGAAAGAAAAATCATCAAAGGGAGGATATAGATTTGGAGGATGGGAGGAGCAACAAGCAATCGGCGGTTTATATGGATGGTGAGGAGGGTGAGCTGTCTGATATTTTTGATAAGGTGTTGCTCTGCAAGCCTATCATGAGTAAAGACGATATATTCAGTCAGAATGGAGCAAACAATGGCTTGCAGCAGGATGGGCTATCTGTTGGAATTGGTAATGGGAAGGTTTGTGGCAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

15.95

Weight (kDa)

5.92

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 101, 128, 266
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 385
AsuHPI GGTGA 2 cut(s) 293, 302
BbvI GCAGC 1 cut(s) 397
BccI CCATC 3 cut(s) 236, 272, 386
BfaI CTAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 6, 196
BsaJI CCNNGG 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 3 cut(s) 247, 283, 397
BseRI GAGGAG 3 cut(s) 74, 262, 299
BseXI GCAGC 1 cut(s) 397
BshFI GGCC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 141
BsnI GGCC 1 cut(s) 140
BspACI CCGC 3 cut(s) 101, 128, 266
BspANI GGCC 1 cut(s) 140
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 6, 196
BssECI CCNNGG 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 329, 383
BstF5I GGATG 3 cut(s) 247, 283, 397
BstMWI GCNNNNNNNGC 2 cut(s) 328, 394
BstV1I GCAGC 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 170
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 3 cut(s) 247, 283, 397
Cac8I GCNNGC 2 cut(s) 329, 383
CciI TCATGA 1 cut(s) 336
CviAII CATG 1 cut(s) 337
CviJI RGCY 6 cut(s) 115, 140, 295, 331, 381, 397
CviKI_1 RGCY 6 cut(s) 115, 140, 295, 331, 381, 397
EciI GGCGGA 1 cut(s) 143
FaeI CATG 1 cut(s) 340
FaiI YATR 6 cut(s) 120, 230, 273, 275, 338, 353
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 3 cut(s) 254, 290, 404
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 386
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 141
Hin1II CATG 1 cut(s) 340
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 293, 302
Hpy188I TCNGA 2 cut(s) 301, 363
Hpy188III TCNNGA 3 cut(s) 8, 198, 337
HpyAV CCTTC 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 40, 327, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 394
Hsp92II CATG 1 cut(s) 340
LmnI GCTCC 2 cut(s) 249, 368
LpnPI CCDG 5 cut(s) 21, 154, 176, 211, 374
Lsp1109I GCAGC 1 cut(s) 397
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 154
MboII GAAGA 2 cut(s) 68, 178
MfeI CAATTG 1 cut(s) 89
MluCI AATT 6 cut(s) 15, 29, 41, 89, 408, 436
MmeI TCCRAC 1 cut(s) 385
MseI TTAA 2 cut(s) 45, 439
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 328, 394
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 2 cut(s) 6, 196
PagI TCATGA 1 cut(s) 336
PkrI GCNGC 1 cut(s) 387
PspN4I GGNNCC 2 cut(s) 6, 196
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 2 cut(s) 45, 439
SatI GCNGC 1 cut(s) 386
SetI ASST 3 cut(s) 297, 318, 426
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 6 cut(s) 15, 29, 41, 89, 408, 436
SsiI CCGC 3 cut(s) 101, 128, 266
SspMI CTAG 1 cut(s) 81
TasI AATT 6 cut(s) 15, 29, 41, 89, 408, 436
Tru1I TTAA 2 cut(s) 45, 439
Tru9I TTAA 2 cut(s) 45, 439
TseI GCWGC 1 cut(s) 385
TspDTI ATGAA 1 cut(s) 42
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.