Rmu_sc0001010.1_g000064

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001010.1
OG0000624
Physical Location & Seq
Reverse (-)
240723 .. 242045
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001010.1_g000064.1.cds

Sequence Viewer

Length: 1323 bp
atggatggtgaggagggtgagctgtctgatattttttacaaggtgttgctctccaagcctatcaagagtaaagacgatcaagtcagtcagaatggagcaaacaatagcctgcagccggatgggctatctgttggaattggtaatgggaaggtttgcggcaagaatcaaggcaacaagaaggaagtgatagatttgagggctcttctgattttatgtgcacaagctgtttctgttgatgatcgcgagactgctagtgagctactaaagcagattatgcagcactcttccccatttggtgattgtgctcagaggttggctcattgctttgcaaatgctcttgaagcgaggttggctggcactggaactcaaatatatactgctttatctactaaacgaatgtcagctgctgatatgctgaagtattaccaagcttatattacagcctgcccgttgaataagatgtccttgatctttgcaaacgatatgattttaaaagctgctgagaaagcagaaacactacatataatagattttggtatccgttatggttttcaatggccagctctcattcattgcctctcaagaagacctggtggacctccaaaattacgcattacagggttagagtttccctcaagtggttttcgaccagaagaaggagtccaagagacagggcatcgcttggcaaagtattgtaggcgatttaatgttccttttgagtactatgccatagccaaaaaatgggatactgtccaatttgatgacctcaaagttcaaagaaatgaggtgcttgctgttaattgtgtctgccggtttaagaacctccttgatgagtcagctgtggtaaacagtccaagggatactgttctaaaattaattaggaagttgaatcctgatgtctttgtccagagtgttgttaatggatcccatcatgcacccttctttgttccacgcttccgagaggcactattccacttctctgcattgtttgatatgttggataccaatttgcctcgtgaagatcagatgagattggggtttgagaaagagtttattggacgtgaagttgtgaatatagtagcttgtgagggctttcaaagaattgttaggccagaaacatacaagcagtggcagattcgaaacatgagggctgggttcagacagctgccattggaccgtgaagtcatgaacaaaataaaggataaggtaaaaatggggtaccacccttcttttgtggttgatgaagatggccactggatgctgcagggatggaagggcagaattctgtatgcttctgcctgttgggcaccttctaggacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

440

Amino Acids

49.92

Weight (kDa)

8.91

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 80, 1181
Acc65I GGTACC 1 cut(s) 1218
AccB1I GGYRCC 2 cut(s) 1218, 1306
AccB7I CCANNNNNTGG 1 cut(s) 741
AccII CGCG 1 cut(s) 243
AciI CCGC 1 cut(s) 156
AclWI GGATC 2 cut(s) 918, 931
AcoI YGGCCR 2 cut(s) 557, 1249
AcsI RAATTY 1 cut(s) 1281
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 2 cut(s) 722, 1220
AfiI CCNNNNNNNGG 4 cut(s) 115, 638, 656, 741
AgsI TTSAA 6 cut(s) 341, 454, 554, 776, 889, 1097
AjiI CACGTC 1 cut(s) 1061
AjnI CCWGG 1 cut(s) 589
Alw21I GWGCWC 2 cut(s) 220, 307
Alw26I GTCTC 2 cut(s) 239, 662
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 2 cut(s) 918, 931
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 3 cut(s) 557, 1109, 1249
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 6 cut(s) 112, 277, 404, 497, 1165, 1261
ApoI RAATTY 1 cut(s) 1281
AseI ATTAAT 1 cut(s) 875
Asp718I GGTACC 1 cut(s) 1218
AspS9I GGNCC 2 cut(s) 596, 1174
AsuHPI GGTGA 3 cut(s) 20, 29, 308
AsuII TTCGAA 1 cut(s) 1138
AvaII GGWCC 2 cut(s) 596, 1174
BaeGI GKGCMC 2 cut(s) 220, 1309
BalI TGGCCA 2 cut(s) 559, 1251
BamHI GGATCC 1 cut(s) 923
BanI GGYRCC 2 cut(s) 1218, 1306
BanII GRGCYC 1 cut(s) 202
BauI CACGAG 1 cut(s) 1014
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 2 cut(s) 220, 307
BbvI GCAGC 6 cut(s) 124, 289, 391, 484, 1152, 1248
BccI CCATC 4 cut(s) 113, 936, 1241, 1263
BciT130I CCWGG 1 cut(s) 591
BciVI GTATCC 4 cut(s) 548, 739, 853, 994
BcoDI GTCTC 2 cut(s) 239, 662
BfaI CTAG 2 cut(s) 252, 1314
BfmI CTRYAG 2 cut(s) 110, 1262
BfuI GTATCC 4 cut(s) 548, 739, 853, 994
BglI GCCNNNNNGGC 2 cut(s) 121, 1304
BisI GCNGC 7 cut(s) 113, 157, 278, 405, 498, 1166, 1262
BlsI GCNGC 7 cut(s) 114, 158, 279, 406, 499, 1167, 1263
BmcAI AGTACT 1 cut(s) 722
Bme1390I CCNGG 1 cut(s) 591
Bme18I GGWCC 2 cut(s) 596, 1174
BmgBI CACGTC 1 cut(s) 1061
BmgT120I GGNCC 2 cut(s) 596, 1174
BmiI GGNNCC 3 cut(s) 925, 1220, 1308
BmrFI CCNGG 1 cut(s) 591
BmsI GCATC 2 cut(s) 685, 1248
BpiI GAAGAC 1 cut(s) 592
BplI GAGNNNNNCTC 4 cut(s) 301, 333, 617, 649
Bpu14I TTCGAA 1 cut(s) 1138
BpuEI CTTGAG 2 cut(s) 565, 619
BsaJI CCNNGG 1 cut(s) 854
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 638, 656, 741
Bse118I RCCGGY 1 cut(s) 810
Bse1I ACTGG 2 cut(s) 364, 1259
Bse3DI GCAATG 2 cut(s) 319, 571
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 854
BseGI GGATG 4 cut(s) 10, 124, 1263, 1274
BseLI CCNNNNNNNGG 4 cut(s) 115, 638, 656, 741
BseMI GCAATG 2 cut(s) 319, 571
BseMII CTCAG 2 cut(s) 320, 492
BseNI ACTGG 2 cut(s) 364, 1259
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 2 cut(s) 220, 1309
BseXI GCAGC 6 cut(s) 124, 289, 391, 484, 1152, 1248
BseYI CCCAGC 1 cut(s) 1151
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 559, 1111, 1251
BshNI GGYRCC 2 cut(s) 1218, 1306
BsiHKAI GWGCWC 2 cut(s) 220, 307
BsiSI CCGG 2 cut(s) 116, 811
BslI CCNNNNNNNGG 4 cut(s) 115, 638, 656, 741
BsmAI GTCTC 2 cut(s) 239, 662
BsnI GGCC 3 cut(s) 559, 1111, 1251
Bsp119I TTCGAA 1 cut(s) 1138
Bsp1286I GDGCHC 4 cut(s) 202, 220, 307, 1309
Bsp143I GATC 5 cut(s) 76, 238, 468, 923, 1021
Bsp68I TCGCGA 1 cut(s) 243
BspACI CCGC 1 cut(s) 156
BspANI GGCC 3 cut(s) 559, 1111, 1251
BspCNI CTCAG 2 cut(s) 319, 493
BspFNI CGCG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 1185
BspLI GGNNCC 3 cut(s) 925, 1220, 1308
BspMAI CTGCAG 2 cut(s) 114, 1266
BspPI GGATC 2 cut(s) 918, 931
BspQI GCTCTTC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 1138
BspT107I GGYRCC 2 cut(s) 1218, 1306
BsrDI GCAATG 2 cut(s) 319, 571
BsrFI RCCGGY 1 cut(s) 810
BsrI ACTGG 2 cut(s) 364, 1259
BssAI RCCGGY 1 cut(s) 810
BssECI CCNNGG 1 cut(s) 854
BssMI GATC 5 cut(s) 76, 238, 468, 923, 1021
BssSI CACGAG 1 cut(s) 1014
BssT1I CCWWGG 1 cut(s) 854
Bst2BI CACGAG 1 cut(s) 1014
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 4 cut(s) 751, 851, 865, 1178
Bst6I CTCTTC 2 cut(s) 207, 289
BstAPI GCANNNNNTGC 1 cut(s) 274
BstBI TTCGAA 1 cut(s) 1138
BstC8I GCNNGC 5 cut(s) 110, 355, 445, 561, 792
BstDEI CTNAG 2 cut(s) 306, 501
BstF5I GGATG 4 cut(s) 10, 124, 1263, 1274
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 5 cut(s) 79, 241, 471, 926, 1024
BstMAI GTCTC 2 cut(s) 239, 662
BstMBI GATC 5 cut(s) 76, 238, 468, 923, 1021
BstMWI GCNNNNNNNGC 8 cut(s) 55, 121, 265, 274, 341, 350, 506, 1304
BstNI CCWGG 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 589
BstSFI CTRYAG 2 cut(s) 110, 1262
BstSLI GKGCMC 2 cut(s) 220, 1309
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 6 cut(s) 124, 289, 391, 484, 1152, 1248
BstV2I GAAGAC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 923
BstYI RGATCY 1 cut(s) 923
BsuI GTATCC 4 cut(s) 548, 739, 853, 994
BsuRI GGCC 3 cut(s) 559, 1111, 1251
BtgZI GCGATG 1 cut(s) 662
BtrI CACGTC 1 cut(s) 1061
BtsCI GGATG 4 cut(s) 10, 124, 1263, 1274
BtsI GCAGTG 1 cut(s) 1133
BtsIMutI CAGTG 3 cut(s) 357, 1133, 1252
BtuMI TCGCGA 1 cut(s) 243
Cac8I GCNNGC 5 cut(s) 110, 355, 445, 561, 792
CaiI CAGNNNCTG 1 cut(s) 407
CciI TCATGA 1 cut(s) 1185
Cfr10I RCCGGY 1 cut(s) 810
Cfr13I GGNCC 2 cut(s) 596, 1174
CsiI ACCWGGT 1 cut(s) 589
Csp6I GTAC 2 cut(s) 721, 1219
CviAII CATG 3 cut(s) 932, 1144, 1186
CviQI GTAC 2 cut(s) 721, 1219
DdeI CTNAG 2 cut(s) 306, 501
DpnI GATC 5 cut(s) 78, 240, 470, 925, 1023
DpnII GATC 5 cut(s) 76, 238, 468, 923, 1021
DraI TTTAAA 1 cut(s) 492
DrdI GACNNNNNNGTC 2 cut(s) 80, 1181
DseDI GACNNNNNNGTC 2 cut(s) 80, 1181
EaeI YGGCCR 2 cut(s) 557, 1249
Eam1104I CTCTTC 2 cut(s) 207, 289
EarI CTCTTC 2 cut(s) 207, 289
Eco130I CCWWGG 1 cut(s) 854
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 596, 1174
Eco57I CTGAAG 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 1281
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 854
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 854
FaeI CATG 3 cut(s) 935, 1147, 1189
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 3 cut(s) 931, 1143, 1185
Fnu4HI GCNGC 7 cut(s) 113, 157, 278, 405, 498, 1166, 1262
FokI GGATG 4 cut(s) 17, 131, 1270, 1281
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 7 cut(s) 113, 157, 278, 405, 498, 1166, 1262
FspBI CTAG 2 cut(s) 252, 1314
GluI GCNGC 7 cut(s) 113, 157, 278, 405, 498, 1166, 1262
GsaI CCCAGC 1 cut(s) 1155
HaeIII GGCC 3 cut(s) 559, 1111, 1251
HapII CCGG 2 cut(s) 116, 811
Hin1II CATG 3 cut(s) 935, 1147, 1189
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 5 cut(s) 163, 660, 833, 889, 1135
HpaII CCGG 2 cut(s) 116, 811
HphI GGTGA 3 cut(s) 20, 29, 308
Hpy166II GTNNAC 3 cut(s) 218, 596, 847
Hpy188I TCNGA 7 cut(s) 28, 90, 207, 309, 959, 1026, 1160
Hpy188III TCNNGA 8 cut(s) 64, 242, 338, 582, 893, 907, 1016, 1186
Hpy8I GTNNAC 3 cut(s) 218, 596, 847
HpyAV CCTTC 7 cut(s) 142, 172, 650, 949, 1236, 1267, 1320
HpyCH4III ACNGT 4 cut(s) 751, 851, 865, 1178
HpyCH4IV ACGT 1 cut(s) 1060
HpyCH4V TGCA 8 cut(s) 112, 218, 277, 329, 476, 935, 983, 1264
HpyF10VI GCNNNNNNNGC 8 cut(s) 55, 121, 265, 274, 341, 350, 506, 1304
HpyF3I CTNAG 2 cut(s) 306, 501
HpySE526I ACGT 1 cut(s) 1060
Hsp92II CATG 3 cut(s) 935, 1147, 1189
KpnI GGTACC 1 cut(s) 1222
Kzo9I GATC 5 cut(s) 76, 238, 468, 923, 1021
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 6 cut(s) 124, 289, 391, 484, 1152, 1248
LweI GCATC 2 cut(s) 685, 1248
MabI ACCWGGT 1 cut(s) 589
MaeI CTAG 2 cut(s) 252, 1314
MaeII ACGT 1 cut(s) 1060
MalI GATC 5 cut(s) 78, 240, 470, 925, 1023
MboI GATC 5 cut(s) 76, 238, 468, 923, 1021
MboII GAAGA 6 cut(s) 194, 276, 597, 665, 1031, 1256
MflI RGATCY 1 cut(s) 923
MhlI GDGCHC 4 cut(s) 202, 220, 307, 1309
MlsI TGGCCA 2 cut(s) 559, 1251
MluCI AATT 9 cut(s) 135, 605, 755, 799, 872, 876, 1006, 1101, 1281
MluNI TGGCCA 2 cut(s) 559, 1251
MlyI GAGTC 2 cut(s) 669, 842
MmeI TCCRAC 2 cut(s) 112, 978
Mox20I TGGCCA 2 cut(s) 559, 1251
MscI TGGCCA 2 cut(s) 559, 1251
MseI TTAA 6 cut(s) 491, 705, 798, 816, 875, 918
Msp20I TGGCCA 2 cut(s) 559, 1251
MspA1I CMGCKG 3 cut(s) 404, 839, 1165
MspI CCGG 2 cut(s) 116, 811
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 8 cut(s) 55, 121, 265, 274, 341, 350, 506, 1304
NdeII GATC 5 cut(s) 76, 238, 468, 923, 1021
NlaIII CATG 3 cut(s) 935, 1147, 1189
NlaIV GGNNCC 3 cut(s) 925, 1220, 1308
NruI TCGCGA 1 cut(s) 243
NspV TTCGAA 1 cut(s) 1138
PagI TCATGA 1 cut(s) 1185
PciSI GCTCTTC 1 cut(s) 207
PfeI GAWTC 3 cut(s) 163, 889, 1135
PflMI CCANNNNNTGG 1 cut(s) 741
PkrI GCNGC 7 cut(s) 114, 158, 279, 406, 499, 1167, 1263
PleI GAGTC 2 cut(s) 668, 841
PpsI GAGTC 2 cut(s) 668, 841
PshBI ATTAAT 1 cut(s) 875
Psp6I CCWGG 1 cut(s) 589
PspFI CCCAGC 1 cut(s) 1151
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 3 cut(s) 925, 1220, 1308
PspPI GGNCC 2 cut(s) 596, 1174
PstI CTGCAG 2 cut(s) 114, 1266
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 923
PvuII CAGCTG 3 cut(s) 404, 839, 1165
RruI TCGCGA 1 cut(s) 243
RsaI GTAC 2 cut(s) 722, 1220
RsaNI GTAC 2 cut(s) 721, 1219
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 6 cut(s) 491, 705, 798, 816, 875, 918
SatI GCNGC 7 cut(s) 113, 157, 278, 405, 498, 1166, 1262
Sau3AI GATC 5 cut(s) 76, 238, 468, 923, 1021
Sau96I GGNCC 2 cut(s) 596, 1174
ScaI AGTACT 1 cut(s) 722
SchI GAGTC 2 cut(s) 669, 842
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 4 cut(s) 202, 220, 307, 1309
SexAI ACCWGGT 1 cut(s) 589
SfaNI GCATC 2 cut(s) 685, 1248
SfcI CTRYAG 2 cut(s) 110, 1262
SfuI TTCGAA 1 cut(s) 1138
SinI GGWCC 2 cut(s) 596, 1174
SmlI CTYRAG 2 cut(s) 580, 634
SmoI CTYRAG 2 cut(s) 580, 634
Sse9I AATT 9 cut(s) 135, 605, 755, 799, 872, 876, 1006, 1101, 1281
SsiI CCGC 1 cut(s) 156
SspMI CTAG 2 cut(s) 252, 1314
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 1 cut(s) 854
TaaI ACNGT 4 cut(s) 751, 851, 865, 1178
TaiI ACGT 1 cut(s) 1063
TaqI TCGA 2 cut(s) 646, 1138
TasI AATT 9 cut(s) 135, 605, 755, 799, 872, 876, 1006, 1101, 1281
TatI WGTACW 1 cut(s) 720
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 3 cut(s) 163, 889, 1135
Tru1I TTAA 6 cut(s) 491, 705, 798, 816, 875, 918
Tru9I TTAA 6 cut(s) 491, 705, 798, 816, 875, 918
TscAI CASTG 3 cut(s) 364, 1133, 1259
TseI GCWGC 6 cut(s) 112, 277, 404, 497, 1165, 1261
TspDTI ATGAA 3 cut(s) 560, 1202, 1257
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 3 cut(s) 364, 1133, 1259
Van91I CCANNNNNTGG 1 cut(s) 741
VneI GTGCAC 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 596, 1174
VspI ATTAAT 1 cut(s) 875
XapI RAATTY 1 cut(s) 1281
XspI CTAG 2 cut(s) 252, 1314
ZrmI AGTACT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.