Rorug05G0372400

oxidosqualene cyclase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000624
Physical Location & Seq
Reverse (-)
50190598 .. 50190900
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0372400.1

Sequence Viewer

Length: 303 bp
ATGGCAGCTCCAGCTCGCAACCACGGGGGCCCGCCCCGCGAGGCCGGGGTGGGCTCAGCGGTCAGGTTAGCCCTCATTCGAATGGGTCTTTCACTTTTGACAGATCTAGAGAGATACTACGAGTCCTCCGTCCCAGATTCCATCGCCGCGGCCATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTATGTTACTGTTATTGATGGTTTTATTATCTTGGACCACGAAGACCCCGGTCGTGCTTCTGGTTTCCATTCCTATCATCATATTGATGATAAATCTCCTCGTGCTCTGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110
Pfam Domains
Protein Families
Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

100

Amino Acids

10.83

Weight (kDa)

6.57

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 39, 149
AciI CCGC 5 cut(s) 32, 37, 59, 147, 149
AcoI YGGCCR 1 cut(s) 150
AfaI GTAC 1 cut(s) 169
AgeI ACCGGT 1 cut(s) 164
AluBI AGCT 2 cut(s) 8, 14
AluI AGCT 2 cut(s) 8, 14
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 186
AoxI GGCC 3 cut(s) 28, 42, 150
ApaI GGGCCC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 164
AspS9I GGNCC 3 cut(s) 28, 29, 223
AsuC2I CCSGG 2 cut(s) 46, 237
AsuHPI GGTGA 1 cut(s) 154
AsuII TTCGAA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 32
BanII GRGCYC 2 cut(s) 32, 56
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 149, 161, 200
BcnI CCSGG 2 cut(s) 46, 237
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 107
BglII AGATCT 1 cut(s) 103
BisI GCNGC 3 cut(s) 6, 147, 150
BlpI GCTNAGC 1 cut(s) 55
BlsI GCNGC 3 cut(s) 7, 148, 151
Bme1390I CCNGG 2 cut(s) 46, 237
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 3 cut(s) 28, 29, 223
BmiI GGNNCC 2 cut(s) 29, 30
BmrFI CCNGG 2 cut(s) 46, 237
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 237
Bpu1102I GCTNAGC 1 cut(s) 55
Bpu14I TTCGAA 1 cut(s) 79
BpuMI CCSGG 2 cut(s) 46, 237
BsaJI CCNNGG 4 cut(s) 22, 45, 147, 235
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bse118I RCCGGY 1 cut(s) 164
BseDI CCNNGG 4 cut(s) 22, 45, 147, 235
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 2 cut(s) 39, 149
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 3 cut(s) 30, 44, 152
BshTI ACCGGT 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 3 cut(s) 45, 165, 237
BslFI GGGAC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 3 cut(s) 30, 44, 152
Bsp119I TTCGAA 1 cut(s) 79
Bsp120I GGGCCC 1 cut(s) 28
Bsp1286I GDGCHC 3 cut(s) 32, 56, 295
Bsp143I GATC 1 cut(s) 103
Bsp1720I GCTNAGC 1 cut(s) 55
BspACI CCGC 5 cut(s) 32, 37, 59, 147, 149
BspANI GGCC 3 cut(s) 30, 44, 152
BspCNI CTCAG 1 cut(s) 68
BspFNI CGCG 2 cut(s) 39, 149
BspLI GGNNCC 2 cut(s) 29, 30
BspT104I TTCGAA 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 4 cut(s) 22, 45, 147, 235
BssMI GATC 1 cut(s) 103
BssSI CACGAG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 16, 32
BstDEI CTNAG 1 cut(s) 55
BstDSI CCRYGG 2 cut(s) 22, 147
BstFNI CGCG 2 cut(s) 39, 149
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 11, 36
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 44, 235
BstSLI GKGCMC 1 cut(s) 32
BstUI CGCG 2 cut(s) 39, 149
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 3 cut(s) 30, 44, 152
BtgI CCRYGG 2 cut(s) 22, 147
BtgZI GCGATG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 16, 32
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 3 cut(s) 28, 29, 223
Cfr42I CCGCGG 1 cut(s) 150
Csp6I GTAC 1 cut(s) 168
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 1 cut(s) 185
CviJI RGCY 7 cut(s) 8, 14, 30, 44, 54, 71, 152
CviKI_1 RGCY 7 cut(s) 8, 14, 30, 44, 54, 71, 152
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 55
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 32, 56
Eco47I GGWCC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 28
EcoT38I GRGCYC 2 cut(s) 32, 56
FaeI CATG 1 cut(s) 188
FaiI YATR 4 cut(s) 186, 192, 270, 301
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 184
FauI CCCGC 2 cut(s) 39, 44
Fnu4HI GCNGC 3 cut(s) 6, 147, 150
FriOI GRGCYC 2 cut(s) 32, 56
Fsp4HI GCNGC 3 cut(s) 6, 147, 150
FspBI CTAG 1 cut(s) 107
GluI GCNGC 3 cut(s) 6, 147, 150
HaeIII GGCC 3 cut(s) 30, 44, 152
HapII CCGG 3 cut(s) 45, 165, 237
Hin1II CATG 1 cut(s) 188
HinfI GANTC 2 cut(s) 122, 137
HpaII CCGG 3 cut(s) 45, 165, 237
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 36
HpyF3I CTNAG 1 cut(s) 55
Hsp92II CATG 1 cut(s) 188
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 8 cut(s) 24, 49, 58, 142, 147, 178, 234, 250
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 242
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 3 cut(s) 32, 56, 295
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 4 cut(s) 34, 83, 136, 297
MslI CAYNNNNRTG 3 cut(s) 80, 189, 273
MspA1I CMGCKG 2 cut(s) 59, 149
MspI CCGG 3 cut(s) 45, 165, 237
MspR9I CCNGG 2 cut(s) 46, 237
MvnI CGCG 2 cut(s) 39, 149
MwoI GCNNNNNNNGC 2 cut(s) 11, 36
NciI CCSGG 2 cut(s) 46, 237
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 2 cut(s) 29, 30
NspV TTCGAA 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 137
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 3 cut(s) 7, 148, 151
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PshAI GACNNNNGTC 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 29, 30
PspOMI GGGCCC 1 cut(s) 28
PspPI GGNCC 3 cut(s) 28, 29, 223
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 3 cut(s) 80, 189, 273
SacII CCGCGG 1 cut(s) 150
SatI GCNGC 3 cut(s) 6, 147, 150
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 3 cut(s) 28, 29, 223
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 46, 237
SduI GDGCHC 3 cut(s) 32, 56, 295
SetI ASST 3 cut(s) 10, 16, 68
Sfr303I CCGCGG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 79
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 3 cut(s) 80, 189, 273
SsiI CCGC 5 cut(s) 32, 37, 59, 147, 149
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 44, 235
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 79
TauI GCSGC 2 cut(s) 149, 152
TfiI GAWTC 1 cut(s) 137
TseI GCWGC 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 223
XbaI TCTAGA 1 cut(s) 106
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.