Rmu_co8062944.1_g000001

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8062944.1
OG0000624
Physical Location & Seq
Forward (+)
1 .. 570
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8062944.1_g000001.1.cds

Sequence Viewer

Length: 570 bp
aagcagattatgcagcactcttccccatttggtgattgtgctcagaggttggctcattgctttgcaaatgctcttgaagcgaggttggctggcactggaactcaaatatatactgctttatctactaaacgaatgtcagctgctgatatgctgaagtattaccaagcttatattacagcctgcccgttgaataagatgtccttgatctttgcaaacgatatgattttaaaagctgctgagaaagcagaaacactacatataatagattttggtatcctttatggttttcaatggcctgctttcattcattgcctctcaagaagacctggtggacctcccaaattacgtattacaggggtagagcttcccttaagtggttttcgaccagaagaaagagtccaagagacggggcatcgcttggcaaagtattgtaggcgatttaatgttccttttgagtactatgccatagccaaaaaatgggatactgtccaatttgatgacctcaaagttcaaagaaatgaggtgcttgctgttaattgtgtctgccggtttaagaacctccttgatgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

190

Amino Acids

21.68

Weight (kDa)

9.09

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 477
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 3 cut(s) 374, 406, 477
AflII CTTAAG 1 cut(s) 370
AgsI TTSAA 4 cut(s) 77, 190, 290, 512
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 4 cut(s) 140, 167, 233, 364
AluI AGCT 4 cut(s) 140, 167, 233, 364
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 3 cut(s) 13, 140, 233
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 3 cut(s) 25, 127, 220
BciT130I CCWGG 1 cut(s) 327
BciVI GTATCC 2 cut(s) 284, 475
BcoDI GTCTC 1 cut(s) 398
BfrI CTTAAG 1 cut(s) 370
BfuI GTATCC 2 cut(s) 284, 475
BisI GCNGC 3 cut(s) 14, 141, 234
BlsI GCNGC 3 cut(s) 15, 142, 235
BmcAI AGTACT 1 cut(s) 458
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 328
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpuEI CTTGAG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 374, 406, 477
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 2 cut(s) 55, 307
BseBI CCWGG 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 374, 406, 477
BseMI GCAATG 2 cut(s) 55, 307
BseMII CTCAG 2 cut(s) 56, 228
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 3 cut(s) 25, 127, 220
BshFI GGCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 547
BslI CCNNNNNNNGG 3 cut(s) 374, 406, 477
BsmAI GTCTC 1 cut(s) 398
BsmBI CGTCTC 1 cut(s) 398
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 204
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 2 cut(s) 55, 229
BspTI CTTAAG 1 cut(s) 370
BsrDI GCAATG 2 cut(s) 55, 307
BsrFI RCCGGY 1 cut(s) 546
BsrI ACTGG 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 546
BssMI GATC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 25
BstAFI CTTAAG 1 cut(s) 370
BstAPI GCANNNNNTGC 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 4 cut(s) 91, 181, 297, 528
BstDEI CTNAG 2 cut(s) 42, 237
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 4 cut(s) 10, 77, 86, 242
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstSNI TACGTA 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 25, 127, 220
BstV2I GAAGAC 1 cut(s) 328
BsuI GTATCC 2 cut(s) 284, 475
BsuRI GGCC 1 cut(s) 295
BtgZI GCGATG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 4 cut(s) 91, 181, 297, 528
CaiI CAGNNNCTG 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 332
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 1 cut(s) 457
CviJI RGCY 9 cut(s) 53, 89, 140, 167, 179, 233, 295, 364, 470
CviKI_1 RGCY 9 cut(s) 53, 89, 140, 167, 179, 233, 295, 364, 470
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 42, 237
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DraI TTTAAA 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco105I TACGTA 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 398
FalI AAGNNNNNCTT 2 cut(s) 185, 217
Fnu4HI GCNGC 3 cut(s) 14, 141, 234
Fsp4HI GCNGC 3 cut(s) 14, 141, 234
GluI GCNGC 3 cut(s) 14, 141, 234
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 1 cut(s) 396
HpaII CCGG 1 cut(s) 547
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 74, 318
Hpy8I GTNNAC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 13, 65, 212
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 77, 86, 242
HpyF3I CTNAG 2 cut(s) 42, 237
HpySE526I ACGT 1 cut(s) 346
Kzo9I GATC 1 cut(s) 204
LpnPI CCDG 9 cut(s) 75, 81, 193, 309, 312, 339, 339, 399, 560
Lsp1109I GCAGC 3 cut(s) 25, 127, 220
LweI GCATC 1 cut(s) 421
MabI ACCWGGT 1 cut(s) 325
MaeII ACGT 1 cut(s) 346
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 3 cut(s) 12, 333, 401
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 3 cut(s) 341, 491, 535
MlyI GAGTC 1 cut(s) 405
MnlI CCTC 7 cut(s) 39, 75, 323, 345, 512, 514, 569
MseI TTAA 5 cut(s) 227, 371, 441, 534, 552
MspA1I CMGCKG 1 cut(s) 140
MspCI CTTAAG 1 cut(s) 370
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 4 cut(s) 10, 77, 86, 242
NdeII GATC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 477
PkrI GCNGC 3 cut(s) 15, 142, 235
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspPI GGNCC 1 cut(s) 332
PstNI CAGNNNCTG 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SaqAI TTAA 5 cut(s) 227, 371, 441, 534, 552
SatI GCNGC 3 cut(s) 14, 141, 234
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 332
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 43
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 1 cut(s) 332
SmlI CTYRAG 2 cut(s) 316, 370
SmoI CTYRAG 2 cut(s) 316, 370
SnaBI TACGTA 1 cut(s) 347
Sse9I AATT 3 cut(s) 341, 491, 535
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 382
TasI AATT 3 cut(s) 341, 491, 535
TatI WGTACW 1 cut(s) 456
Tru1I TTAA 5 cut(s) 227, 371, 441, 534, 552
Tru9I TTAA 5 cut(s) 227, 371, 441, 534, 552
TscAI CASTG 1 cut(s) 100
TseI GCWGC 3 cut(s) 13, 140, 233
TspDTI ATGAA 2 cut(s) 292, 296
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 477
Vha464I CTTAAG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.