Rh5CG467900

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000624
Physical Location & Seq
Forward (+)
65220289 .. 65221248
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG467900.1

Sequence Viewer

Length: 960 bp
ATGGCGGATAGAAAGGCCGGAGATGTGGTAGTTACGACCCAGAAGAATGGGAGTGAGCATTTTCGTGTTGGTTCTAGAGGAAAGAAAAATCATCAAAGGGAAGATATAGATTTGGAGGATGGGAGGAGTAACAAGCAATCGGCGGTTTATATGGATGGTGAGGAGGGTGAGCTGTCTGATATTTTTGATAAGGTGTTGCTCTGCAAGCCTATCATGAGTAAAGACGATCAATTCAGTCAGAATGGAGCAAACAATGGCTTGCAGCAGGATGGGCTCTCTGTTGGAATTGGTAATGGGAAGGTTTGCGGCAAGAATCAAGGCAACAAGAAGGAAGTGATAGATTTGAGGGCTCTTCTTATTTCATGTGCAGAAGCTGTATCTGTTGATGACCGCGAGACTGCTAGTGAGCTACTAAAGCAGATTATGCAGCACTCTTCCCCATTTGGTGATTGTACTGAGAGGTTGGCTCATTGCTTTGCAAATGCTCTTGAAGCGCGGTTGGCTGGCACAGGAACTCAAATATATACTGCTTTAACTACTAAACGAATGTCAGCTGCTGATTCGCTGAAGTTTTACCAAGCTTATATTGCAGTCTGCCCGTTCATGAAGTTGTTGATGATCTTTGCAAACGATATGATTTTAAAAGCTGCTGAGAAAGCAGAAACACTTCATATAATAGATTTTGGTATCTGTTATGGTTTTCAATGGCCTGCTCTCATTCATTGCCTCTCAAGAAGACCTGGTGGACCTCCCAAATTACGCATTACAGGGGTAGAGCTTCCCTCTAGTGGTTTTCGACCAGAAGAAGGAGTCCAAGAGACAGGGCATCGCTTGGCAAAGTATTGTAGGCGATTTAATGTTCATTTTGAGTACTGCGGCATAGCCAAAAAATGGGAAACTCTCCAATTTGATGACCTTAGAGTTCAAAGAAATGAGGTGCTTGCTGTTAATTGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

319

Amino Acids

35.46

Weight (kDa)

7.06

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 115 - 318 6.6e-68 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 891
AccII CGCG 2 cut(s) 393, 496
AciI CCGC 6 cut(s) 5, 143, 306, 391, 496, 876
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 2 cut(s) 454, 872
AfiI CCNNNNNNNGG 3 cut(s) 788, 806, 891
AgsI TTSAA 3 cut(s) 491, 704, 926
AjnI CCWGG 1 cut(s) 739
AluBI AGCT 7 cut(s) 172, 374, 409, 554, 581, 647, 778
AluI AGCT 7 cut(s) 172, 374, 409, 554, 581, 647, 778
Alw26I GTCTC 2 cut(s) 389, 812
AlwNI CAGNNNCTG 2 cut(s) 374, 557
AoxI GGCC 2 cut(s) 15, 707
ApeKI GCWGC 4 cut(s) 262, 427, 554, 647
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 746
AsuHPI GGTGA 3 cut(s) 170, 179, 458
AvaII GGWCC 1 cut(s) 746
BanII GRGCYC 2 cut(s) 276, 352
BbsI GAAGAC 1 cut(s) 742
BbvI GCAGC 4 cut(s) 274, 439, 541, 634
BccI CCATC 3 cut(s) 113, 149, 263
BciT130I CCWGG 1 cut(s) 741
BcoDI GTCTC 2 cut(s) 389, 812
BfaI CTAG 3 cut(s) 75, 402, 786
BisI GCNGC 6 cut(s) 263, 307, 428, 555, 648, 877
BlsI GCNGC 6 cut(s) 264, 308, 429, 556, 649, 878
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 746
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 742
BplI GAGNNNNNCTC 4 cut(s) 451, 483, 767, 799
BpuEI CTTGAG 1 cut(s) 715
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 3 cut(s) 788, 806, 891
Bse3DI GCAATG 2 cut(s) 469, 721
BseBI CCWGG 1 cut(s) 741
BseGI GGATG 3 cut(s) 124, 160, 274
BseLI CCNNNNNNNGG 3 cut(s) 788, 806, 891
BseMI GCAATG 2 cut(s) 469, 721
BseMII CTCAG 2 cut(s) 447, 642
BseRI GAGGAG 2 cut(s) 139, 176
BseXI GCAGC 4 cut(s) 274, 439, 541, 634
BsgI GTGCAG 1 cut(s) 387
Bsh1236I CGCG 2 cut(s) 393, 496
BshFI GGCC 2 cut(s) 17, 709
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 788, 806, 891
BsmAI GTCTC 2 cut(s) 389, 812
BsnI GGCC 2 cut(s) 17, 709
Bsp1286I GDGCHC 2 cut(s) 276, 352
Bsp143I GATC 2 cut(s) 226, 618
BspACI CCGC 6 cut(s) 5, 143, 306, 391, 496, 876
BspANI GGCC 2 cut(s) 17, 709
BspCNI CTCAG 2 cut(s) 448, 643
BspFNI CGCG 2 cut(s) 393, 496
BspHI TCATGA 2 cut(s) 213, 603
BspQI GCTCTTC 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 469, 721
BssMI GATC 2 cut(s) 226, 618
Bst2UI CCWGG 1 cut(s) 741
Bst6I CTCTTC 2 cut(s) 357, 439
BstAPI GCANNNNNTGC 1 cut(s) 424
BstC8I GCNNGC 5 cut(s) 206, 260, 505, 711, 942
BstDEI CTNAG 3 cut(s) 456, 651, 917
BstF5I GGATG 3 cut(s) 124, 160, 274
BstFNI CGCG 2 cut(s) 393, 496
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 2 cut(s) 229, 621
BstMAI GTCTC 2 cut(s) 389, 812
BstMBI GATC 2 cut(s) 226, 618
BstMWI GCNNNNNNNGC 8 cut(s) 205, 271, 415, 424, 491, 500, 587, 656
BstNI CCWGG 1 cut(s) 741
BstSCI CCNGG 1 cut(s) 739
BstUI CGCG 2 cut(s) 393, 496
BstV1I GCAGC 4 cut(s) 274, 439, 541, 634
BstV2I GAAGAC 1 cut(s) 742
BstXI CCANNNNNNTGG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 17, 709
BtgZI GCGATG 1 cut(s) 812
BtsCI GGATG 3 cut(s) 124, 160, 274
Cac8I GCNNGC 5 cut(s) 206, 260, 505, 711, 942
CaiI CAGNNNCTG 2 cut(s) 374, 557
CciI TCATGA 2 cut(s) 213, 603
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 746
CsiI ACCWGGT 1 cut(s) 739
Csp6I GTAC 2 cut(s) 453, 871
CviAII CATG 3 cut(s) 214, 363, 604
CviQI GTAC 2 cut(s) 453, 871
DdeI CTNAG 3 cut(s) 456, 651, 917
DpnI GATC 2 cut(s) 228, 620
DpnII GATC 2 cut(s) 226, 618
DraI TTTAAA 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 357, 439
EarI CTCTTC 2 cut(s) 357, 439
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 2 cut(s) 276, 352
Eco47I GGWCC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 739
EcoT38I GRGCYC 2 cut(s) 276, 352
FaeI CATG 3 cut(s) 217, 366, 607
FatI CATG 3 cut(s) 213, 362, 603
Fnu4HI GCNGC 6 cut(s) 263, 307, 428, 555, 648, 877
FokI GGATG 3 cut(s) 131, 167, 281
FriOI GRGCYC 2 cut(s) 276, 352
Fsp4HI GCNGC 6 cut(s) 263, 307, 428, 555, 648, 877
FspBI CTAG 3 cut(s) 75, 402, 786
GlaI GCGC 1 cut(s) 495
GluI GCNGC 6 cut(s) 263, 307, 428, 555, 648, 877
HaeIII GGCC 2 cut(s) 17, 709
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 496
Hin1II CATG 3 cut(s) 217, 366, 607
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HindIII AAGCTT 1 cut(s) 579
HinfI GANTC 3 cut(s) 313, 560, 810
HpaII CCGG 1 cut(s) 18
HphI GGTGA 3 cut(s) 170, 179, 458
Hpy166II GTNNAC 1 cut(s) 746
Hpy188I TCNGA 2 cut(s) 178, 240
Hpy188III TCNNGA 5 cut(s) 75, 214, 488, 604, 732
Hpy8I GTNNAC 1 cut(s) 746
HpyAV CCTTC 3 cut(s) 292, 322, 800
HpyCH4V TGCA 7 cut(s) 204, 262, 368, 427, 479, 590, 626
HpyF10VI GCNNNNNNNGC 8 cut(s) 205, 271, 415, 424, 491, 500, 587, 656
HpyF3I CTNAG 3 cut(s) 456, 651, 917
Hsp92II CATG 3 cut(s) 217, 366, 607
HspAI GCGC 1 cut(s) 494
Kzo9I GATC 2 cut(s) 226, 618
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 4 cut(s) 274, 439, 541, 634
LweI GCATC 1 cut(s) 835
MabI ACCWGGT 1 cut(s) 739
MaeI CTAG 3 cut(s) 75, 402, 786
MaeIII GTNAC 2 cut(s) 31, 128
MalI GATC 2 cut(s) 228, 620
MboI GATC 2 cut(s) 226, 618
MboII GAAGA 6 cut(s) 55, 113, 344, 426, 747, 815
MhlI GDGCHC 2 cut(s) 276, 352
MluCI AATT 5 cut(s) 230, 285, 755, 905, 949
MlyI GAGTC 1 cut(s) 819
MmeI TCCRAC 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 4 cut(s) 533, 641, 855, 948
MslI CAYNNNNRTG 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 741
MvnI CGCG 2 cut(s) 393, 496
MwoI GCNNNNNNNGC 8 cut(s) 205, 271, 415, 424, 491, 500, 587, 656
NdeII GATC 2 cut(s) 226, 618
NlaIII CATG 3 cut(s) 217, 366, 607
PagI TCATGA 2 cut(s) 213, 603
PciSI GCTCTTC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 313, 560
PflMI CCANNNNNTGG 1 cut(s) 891
PkrI GCNGC 6 cut(s) 264, 308, 429, 556, 649, 878
PleI GAGTC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 739
PspPI GGNCC 1 cut(s) 746
PstNI CAGNNNCTG 2 cut(s) 374, 557
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 454, 872
RsaNI GTAC 2 cut(s) 453, 871
RseI CAYNNNNRTG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 4 cut(s) 533, 641, 855, 948
SatI GCNGC 6 cut(s) 263, 307, 428, 555, 648, 877
Sau3AI GATC 2 cut(s) 226, 618
Sau96I GGNCC 1 cut(s) 746
ScaI AGTACT 1 cut(s) 872
SchI GAGTC 1 cut(s) 819
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 2 cut(s) 276, 352
SexAI ACCWGGT 1 cut(s) 739
SfaNI GCATC 1 cut(s) 835
SinI GGWCC 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
Sse9I AATT 5 cut(s) 230, 285, 755, 905, 949
SsiI CCGC 6 cut(s) 5, 143, 306, 391, 496, 876
SspMI CTAG 3 cut(s) 75, 402, 786
StyD4I CCNGG 1 cut(s) 739
TaqI TCGA 1 cut(s) 796
TasI AATT 5 cut(s) 230, 285, 755, 905, 949
TatI WGTACW 2 cut(s) 452, 870
TauI GCSGC 2 cut(s) 309, 879
TfiI GAWTC 2 cut(s) 313, 560
Tru1I TTAA 4 cut(s) 533, 641, 855, 948
Tru9I TTAA 4 cut(s) 533, 641, 855, 948
TseI GCWGC 4 cut(s) 262, 427, 554, 647
TspDTI ATGAA 6 cut(s) 351, 592, 620, 659, 710, 851
Van91I CCANNNNNTGG 1 cut(s) 891
VpaK11BI GGWCC 1 cut(s) 746
XbaI TCTAGA 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 3 cut(s) 75, 402, 786
ZrmI AGTACT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.