FvH4_4g19780

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000660
Physical Location & Seq
Forward (+)
23317899 .. 23319091
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19780.t1

Sequence Viewer

Length: 639 bp
ATGGATGATTCTCCACCAGCAGAGGAGCTTCTAAACCGGCTTCAAGTACTGGAAGAGGACCTCAAGCAAGAACTGCCGACCGTGTTCATGGACAACTCCTACTCCTATGCCGAACGGGAAAGCCATAGAGCTCTGGCCGTGTCGCGGTGCTCAAGATTCTCTTCAAAAAGGAGGATCAGCAGTGGCAGCCGGCTGCCCCCAACTCTGAACTTCAGTGATCGGCAGTGTCTGAACATATTGCAGTCAATTGGACAAGCTGTTTATATATTTGATCTTGACTGTCGTATAATTTACTGGAACAAAGCCGCTGGAAATCTATTTGGTTATTCTGTTGCGGAGGTCCTTGGACAGAATGCCCTCGAGCTCTTAGCAGATCCCCAAGCCTTTGTTGTAGGACAAGATCTCGTTCAACGTCTCACCAATGGGGAGAGCTGGACAGGGCAGTTCCCAGTCAAGAACAAAATGGGGGAAACATTTTTAGCCATTACAACGAATACTCCATTTTGTGATGATGATGGCACTTTTATTGGGGTTATTTGCGTCTCAAGTGATGTCCGCCTTTTTCAAGATAAGAAGGTGTTGAGTGAGCTGCTCCATTCAAGCAGCAAATCTGGACTACTGCTCCAACAACTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

213

Amino Acids

23.69

Weight (kDa)

4.99

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS PF00989 78 - 185 1.2e-13 PAS fold
PAS_8 PF13188 79 - 128 7.2e-07 PAS domain
PAS_4 PF08448 81 - 185 2.2e-12 PAS fold
PAS_9 PF13426 87 - 185 4.9e-13 PAS domain
PAS_3 PF08447 96 - 181 7.6e-08 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 145
AciI CCGC 4 cut(s) 145, 306, 335, 556
AclWI GGATC 2 cut(s) 182, 368
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 5 cut(s) 44, 165, 410, 566, 600
AluBI AGCT 6 cut(s) 28, 131, 257, 364, 432, 589
AluI AGCT 6 cut(s) 28, 131, 257, 364, 432, 589
Alw21I GWGCWC 3 cut(s) 133, 152, 366
Alw26I GTCTC 2 cut(s) 419, 547
AlwI GGATC 2 cut(s) 182, 368
AlwNI CAGNNNCTG 1 cut(s) 229
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 4 cut(s) 186, 193, 589, 603
AspS9I GGNCC 2 cut(s) 58, 340
AsuHPI GGTGA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 58, 340
BanII GRGCYC 2 cut(s) 133, 366
Bbv12I GWGCWC 3 cut(s) 133, 152, 366
BbvI GCAGC 4 cut(s) 180, 198, 576, 615
BccI CCATC 1 cut(s) 509
BceAI ACGGC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 419, 547
BglII AGATCT 1 cut(s) 400
BisI GCNGC 5 cut(s) 187, 194, 306, 590, 604
BlsI GCNGC 5 cut(s) 188, 195, 307, 591, 605
BmcAI AGTACT 1 cut(s) 48
Bme18I GGWCC 2 cut(s) 58, 340
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 58, 340
BmrI ACTGGG 1 cut(s) 443
BmuI ACTGGG 1 cut(s) 443
BpuEI CTTGAG 3 cut(s) 47, 136, 529
BsaJI CCNNGG 1 cut(s) 343
BsaXI ACNNNNNCTCC 6 cut(s) 86, 116, 481, 511, 606, 636
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 2 cut(s) 36, 189
Bse1I ACTGG 3 cut(s) 54, 299, 449
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 144
BseNI ACTGG 3 cut(s) 54, 299, 449
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 4 cut(s) 180, 198, 576, 615
Bsh1236I CGCG 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 3 cut(s) 133, 152, 366
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 37, 190
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 419, 547
BsmBI CGTCTC 2 cut(s) 419, 547
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 133, 152, 366
Bsp143I GATC 5 cut(s) 174, 217, 271, 373, 400
BspACI CCGC 4 cut(s) 145, 306, 335, 556
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 1 cut(s) 145
BspPI GGATC 2 cut(s) 182, 368
BsrFI RCCGGY 2 cut(s) 36, 189
BsrI ACTGG 3 cut(s) 54, 299, 449
BssAI RCCGGY 2 cut(s) 36, 189
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 5 cut(s) 174, 217, 271, 373, 400
BssT1I CCWWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 82, 281
Bst6I CTCTTC 2 cut(s) 48, 166
BstAPI GCANNNNNTGC 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 367
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 145
BstKTI GATC 5 cut(s) 177, 220, 274, 376, 403
BstMAI GTCTC 2 cut(s) 419, 547
BstMBI GATC 5 cut(s) 174, 217, 271, 373, 400
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 73, 186
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 4 cut(s) 180, 198, 576, 615
BstX2I RGATCY 2 cut(s) 373, 400
BstYI RGATCY 2 cut(s) 373, 400
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 187, 230
BtsIMutI CAGTG 3 cut(s) 187, 220, 230
Cac8I GCNNGC 1 cut(s) 191
CaiI CAGNNNCTG 1 cut(s) 229
Cfr10I RCCGGY 2 cut(s) 36, 189
Cfr13I GGNCC 2 cut(s) 58, 340
CseI GACGC 1 cut(s) 529
Csp6I GTAC 1 cut(s) 47
CviAII CATG 1 cut(s) 88
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 1 cut(s) 367
DpnI GATC 5 cut(s) 176, 219, 273, 375, 402
DpnII GATC 5 cut(s) 174, 217, 271, 373, 400
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 48, 166
EarI CTCTTC 2 cut(s) 48, 166
EciI GGCGGA 1 cut(s) 545
Ecl136II GAGCTC 2 cut(s) 131, 364
Eco130I CCWWGG 1 cut(s) 343
Eco24I GRGCYC 2 cut(s) 133, 366
Eco47I GGWCC 2 cut(s) 58, 340
Eco53kI GAGCTC 2 cut(s) 131, 364
Eco57I CTGAAG 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 359
EcoICRI GAGCTC 2 cut(s) 131, 364
EcoO109I RGGNCCY 2 cut(s) 58, 340
EcoT14I CCWWGG 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 133, 366
ErhI CCWWGG 1 cut(s) 343
Esp3I CGTCTC 2 cut(s) 419, 547
FaeI CATG 1 cut(s) 91
FaiI YATR 8 cut(s) 89, 108, 126, 236, 264, 266, 287, 637
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 187, 194, 306, 590, 604
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 133, 366
Fsp4HI GCNGC 5 cut(s) 187, 194, 306, 590, 604
GluI GCNGC 5 cut(s) 187, 194, 306, 590, 604
HaeIII GGCC 1 cut(s) 137
HapII CCGG 2 cut(s) 37, 190
HgaI GACGC 1 cut(s) 529
Hin1II CATG 1 cut(s) 91
HinfI GANTC 2 cut(s) 8, 156
HpaII CCGG 2 cut(s) 37, 190
HphI GGTGA 1 cut(s) 409
Hpy188I TCNGA 2 cut(s) 207, 231
Hpy188III TCNNGA 5 cut(s) 153, 275, 454, 566, 612
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 2 cut(s) 82, 281
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 186
HpyF3I CTNAG 1 cut(s) 367
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 1 cut(s) 91
KroI GCCGGC 1 cut(s) 189
KroNI GCCGGC 1 cut(s) 191
Kzo9I GATC 5 cut(s) 174, 217, 271, 373, 400
LmnI GCTCC 3 cut(s) 25, 597, 627
Lsp1109I GCAGC 4 cut(s) 180, 198, 576, 615
MaeII ACGT 1 cut(s) 412
MalI GATC 5 cut(s) 176, 219, 273, 375, 402
MboI GATC 5 cut(s) 174, 217, 271, 373, 400
MboII GAAGA 2 cut(s) 65, 153
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 2 cut(s) 373, 400
MhlI GDGCHC 3 cut(s) 133, 152, 366
MluCI AATT 2 cut(s) 246, 288
MnlI CCTC 6 cut(s) 16, 49, 71, 165, 331, 368
MroNI GCCGGC 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 37, 190
MunI CAATTG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 358
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 73, 186
NaeI GCCGGC 1 cut(s) 191
NdeII GATC 5 cut(s) 174, 217, 271, 373, 400
NgoMIV GCCGGC 1 cut(s) 189
NlaIII CATG 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 359
PctI GAATGC 1 cut(s) 358
PdiI GCCGGC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 8, 156
PkrI GCNGC 5 cut(s) 188, 195, 307, 591, 605
PpuMI RGGWCCY 2 cut(s) 58, 340
Psp124BI GAGCTC 2 cut(s) 133, 366
Psp5II RGGWCCY 2 cut(s) 58, 340
PspPI GGNCC 2 cut(s) 58, 340
PspPPI RGGWCCY 2 cut(s) 58, 340
PspXI VCTCGAGB 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 2 cut(s) 373, 400
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SacI GAGCTC 2 cut(s) 133, 366
SatI GCNGC 5 cut(s) 187, 194, 306, 590, 604
Sau3AI GATC 5 cut(s) 174, 217, 271, 373, 400
Sau96I GGNCC 2 cut(s) 58, 340
ScaI AGTACT 1 cut(s) 48
SduI GDGCHC 3 cut(s) 133, 152, 366
Sfr274I CTCGAG 1 cut(s) 359
SinI GGWCC 2 cut(s) 58, 340
SlaI CTCGAG 1 cut(s) 359
SmlI CTYRAG 4 cut(s) 62, 151, 359, 544
SmoI CTYRAG 4 cut(s) 62, 151, 359, 544
Sse9I AATT 2 cut(s) 246, 288
SsiI CCGC 4 cut(s) 145, 306, 335, 556
SstI GAGCTC 2 cut(s) 133, 366
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 82, 281
TaiI ACGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 246, 288
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 2 cut(s) 8, 156
TscAI CASTG 3 cut(s) 187, 220, 230
TseI GCWGC 4 cut(s) 186, 193, 589, 603
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 3 cut(s) 187, 220, 230
VpaK11BI GGWCC 2 cut(s) 58, 340
XhoI CTCGAG 1 cut(s) 359
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.