Rmu_co8236475.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8236475.1
OG0000660
Physical Location & Seq
Forward (+)
240 .. 765
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8236475.1_g000001.1.cds

Sequence Viewer

Length: 443 bp
atgtatggttattcagcggcagaggccctgggacgggatcccattgagttgttaacagatccccaggaccatgttgtaggacataatataatccaaagagtcaccaagggggagagctggacagggcacttccctgtcaagaacaaaaagggggagagattttcagctactataacgaatactccattctatgatgatgatggcacttttattggggttatttgtgtgtcaagtgatacgaggccatttcaagaaatcaggacgcaccctgaaccagattcaagcttcagtcgtactaaagctactgttacaactaaacttggtcttgatcctcagcagcctctgcaaactgcaattgcatcaaaaattacaaatttggcatccaagatgagcaacaaagtcaagtcgaaaattcgggcaggagaaaactatatggatcggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

147

Amino Acids

16.32

Weight (kDa)

8.69

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 17
AclWI GGATC 4 cut(s) 32, 45, 53, 323
AcsI RAATTY 2 cut(s) 373, 411
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 2 cut(s) 33, 34
AgsI TTSAA 2 cut(s) 251, 282
AjnI CCWGG 2 cut(s) 27, 63
AluBI AGCT 4 cut(s) 117, 167, 285, 302
AluI AGCT 4 cut(s) 117, 167, 285, 302
AlwI GGATC 4 cut(s) 32, 45, 53, 323
AlwNI CAGNNNCTG 1 cut(s) 343
AoxI GGCC 2 cut(s) 24, 242
ApeKI GCWGC 1 cut(s) 337
ApoI RAATTY 2 cut(s) 373, 411
AspS9I GGNCC 2 cut(s) 25, 67
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 129
BamHI GGATCC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 2 cut(s) 29, 65
BisI GCNGC 2 cut(s) 18, 338
BlsI GCNGC 2 cut(s) 19, 339
Bme1390I CCNGG 2 cut(s) 29, 65
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 25, 67
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 29, 65
BmsI GCATC 2 cut(s) 368, 389
Bpu10I CCTNAGC 1 cut(s) 333
BsaJI CCNNGG 4 cut(s) 27, 28, 63, 105
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 34
BseBI CCWGG 2 cut(s) 29, 65
BseDI CCNNGG 4 cut(s) 27, 28, 63, 105
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 33, 34
BseMII CTCAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 349
BshFI GGCC 2 cut(s) 26, 244
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 33, 34
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 26, 244
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 4 cut(s) 37, 58, 328, 436
BspACI CCGC 1 cut(s) 17
BspANI GGCC 2 cut(s) 26, 244
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 4 cut(s) 32, 45, 53, 323
BssECI CCNNGG 4 cut(s) 27, 28, 63, 105
BssMI GATC 4 cut(s) 37, 58, 328, 436
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 29, 65
Bst4CI ACNGT 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 4 cut(s) 40, 61, 331, 439
BstMBI GATC 4 cut(s) 37, 58, 328, 436
BstMWI GCNNNNNNNGC 2 cut(s) 23, 343
BstNI CCWGG 2 cut(s) 29, 65
BstSCI CCNGG 2 cut(s) 27, 63
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 349
BstX2I RGATCY 2 cut(s) 37, 58
BstYI RGATCY 2 cut(s) 37, 58
BsuRI GGCC 2 cut(s) 26, 244
BtsCI GGATG 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 25, 67
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 71
CviJI RGCY 7 cut(s) 26, 117, 167, 244, 285, 302, 340
CviKI_1 RGCY 7 cut(s) 26, 117, 167, 244, 285, 302, 340
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 1 cut(s) 333
DpnI GATC 4 cut(s) 39, 60, 330, 438
DpnII GATC 4 cut(s) 37, 58, 328, 436
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 27, 63
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 74
FaiI YATR 8 cut(s) 6, 72, 84, 89, 173, 192, 432, 434
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 18, 338
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 18, 338
GluI GCNGC 2 cut(s) 18, 338
HaeIII GGCC 2 cut(s) 26, 244
HgaI GACGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 74
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 2 cut(s) 99, 278
HpaI GTTAAC 1 cut(s) 54
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 54
Hpy188III TCNNGA 5 cut(s) 139, 251, 259, 326, 440
Hpy8I GTNNAC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 3 cut(s) 346, 353, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 343
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 1 cut(s) 74
KspAI GTTAAC 1 cut(s) 54
Kzo9I GATC 4 cut(s) 37, 58, 328, 436
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 2 cut(s) 368, 389
MaeIII GTNAC 2 cut(s) 100, 307
MalI GATC 4 cut(s) 39, 60, 330, 438
MboI GATC 4 cut(s) 37, 58, 328, 436
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 2 cut(s) 37, 58
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 4 cut(s) 354, 366, 373, 411
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 4 cut(s) 16, 234, 342, 351
MseI TTAA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 29, 65
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 2 cut(s) 29, 65
MwoI GCNNNNNNNGC 2 cut(s) 23, 343
NdeII GATC 4 cut(s) 37, 58, 328, 436
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 100
PasI CCCWGGG 1 cut(s) 28
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 19, 339
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 27, 63
PspGI CCWGG 2 cut(s) 27, 63
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 25, 67
PstNI CAGNNNCTG 1 cut(s) 343
PsuI RGATCY 2 cut(s) 37, 58
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 2 cut(s) 18, 338
Sau3AI GATC 4 cut(s) 37, 58, 328, 436
Sau96I GGNCC 2 cut(s) 25, 67
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 2 cut(s) 29, 65
SduI GDGCHC 1 cut(s) 129
SetI ASST 4 cut(s) 119, 169, 287, 304
SfaNI GCATC 2 cut(s) 368, 389
SinI GGWCC 1 cut(s) 67
Sse9I AATT 4 cut(s) 354, 366, 373, 411
SsiI CCGC 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 27, 63
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 407
TasI AATT 4 cut(s) 354, 366, 373, 411
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 337
Tsp45I GTSAC 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 2 cut(s) 373, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.