Rmu_co7998378.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7998378.1
OG0000660
Physical Location & Seq
Forward (+)
1 .. 406
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7998378.1_g000001.1.cds

Sequence Viewer

Length: 231 bp
cctgagtggatggctccagagttccttcgcggagagccctcaaatgagaagtctgatgtctacagtttcggagtaatcctttgggaacttgtgaccatgcaacaaccttggagtgggcttagtcctgcgcaggtagttggcgctgttgctttccagaatagaaggcttgcaatcccagcaaatactcccccaatgttggcttctcttatggaatcctgctgggctgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

76

Amino Acids

8.46

Weight (kDa)

4.54

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 30
AciI CCGC 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 113, 196
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspLEI GCGC 2 cut(s) 130, 143
BanII GRGCYC 1 cut(s) 39
BccI CCATC 1 cut(s) 4
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 196
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 113, 196
BseMII CTCAG 1 cut(s) 216
BseYI CCCAGC 2 cut(s) 175, 219
Bsh1236I CGCG 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 113, 196
Bsp1286I GDGCHC 1 cut(s) 39
BspACI CCGC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 3 cut(s) 3, 119, 225
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 130, 143
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 61
BstUI CGCG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 2 cut(s) 130, 143
CviAII CATG 1 cut(s) 97
CviJI RGCY 6 cut(s) 14, 37, 118, 166, 200, 224
CviKI_1 RGCY 6 cut(s) 14, 37, 118, 166, 200, 224
DdeI CTNAG 3 cut(s) 3, 119, 225
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 98, 209
FatI CATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 60
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 39
FspI TGCGCA 1 cut(s) 129
GlaI GCGC 2 cut(s) 129, 142
GsaI CCCAGC 2 cut(s) 179, 223
HaeII RGCGCY 1 cut(s) 144
HhaI GCGC 2 cut(s) 130, 143
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 2 cut(s) 128, 141
HinP1I GCGC 2 cut(s) 128, 141
HinfI GANTC 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 55, 71
Hpy188III TCNNGA 2 cut(s) 17, 154
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 35, 156
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 100, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 3 cut(s) 3, 119, 225
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 2 cut(s) 128, 141
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 7 cut(s) 15, 30, 116, 138, 167, 189, 205
MaeIII GTNAC 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 39
MnlI CCTC 1 cut(s) 49
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 91
NsbI TGCGCA 1 cut(s) 129
PfeI GAWTC 1 cut(s) 212
PspFI CCCAGC 2 cut(s) 175, 219
PspN4I GGNNCC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 39
SetI ASST 2 cut(s) 109, 135
SfcI CTRYAG 1 cut(s) 61
SsiI CCGC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 212
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.