RchiOBHm_Chr4g0425331

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000660
Physical Location & Seq
Forward (+)
50938873 .. 50939524
652 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39449

Sequence Viewer

Length: 483 bp
ATGTCTTGGCTTGGACCTTGTCATATGAGCGAACCTGCTAGAAATCATTATGGTTATTCTGTGGCAGTGGCCCTTGGACAGAATACAGTTGAGCTCTTAGTAGATCCCCAGGCTTTGATTGTAGGATACAGTATATTTCAACGTCTCACCAAGGGGGAGAGCTGGACCGGGCAGTTCCCTGTCAAGAACAAAATGGGGGAAAGTTTTCCATCCATGGCCACCAGTATTCCATTTTATGATGATGATGGCACTTTTATTGGGGTTATATGTGTTTCCTATGATTTGCGGCCTTTTCAAGGAACAAGGGTTCCACATTTTGGCATGGAGCACTTAGAACCAGATTCAAGCCTTGGCCTTTTTCCTACCACTAGTGCTGCAACTCAAGTTGGTGTTGATCCTCAGCAACCTCTGCAAAGTGCACTTGCATTGAGAATAACAATTTTGGTTAGTCTTCTAGTTAAATTTCATGTTCCTCTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

160

Amino Acids

17.54

Weight (kDa)

5.62

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 317
AciI CCGC 1 cut(s) 286
AclWI GGATC 2 cut(s) 98, 389
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 296, 317
AgsI TTSAA 3 cut(s) 140, 296, 345
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 108
AloI GAACNNNNNNTCC 4 cut(s) 291, 292, 323, 324
AluBI AGCT 2 cut(s) 94, 162
AluI AGCT 2 cut(s) 94, 162
Alw21I GWGCWC 3 cut(s) 96, 330, 421
Alw26I GTCTC 1 cut(s) 149
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 2 cut(s) 98, 389
AoxI GGCC 4 cut(s) 69, 216, 287, 352
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 3 cut(s) 14, 70, 165
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 14, 165
BaeGI GKGCMC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 218
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 3 cut(s) 96, 330, 421
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 361
BccI CCATC 2 cut(s) 217, 239
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 1 cut(s) 119
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 3 cut(s) 39, 369, 455
BfuAI ACCTGC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 2 cut(s) 287, 375
BlsI GCNGC 2 cut(s) 288, 376
Bme1390I CCNGG 2 cut(s) 110, 169
Bme18I GGWCC 2 cut(s) 14, 165
BmgT120I GGNCC 3 cut(s) 14, 70, 165
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 2 cut(s) 110, 169
BpiI GAAGAC 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 169
BsaJI CCNNGG 5 cut(s) 73, 108, 150, 213, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 317
Bse1I ACTGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 5 cut(s) 73, 108, 150, 213, 349
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 2 cut(s) 296, 317
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 361
BshFI GGCC 4 cut(s) 71, 218, 289, 354
BsiHKAI GWGCWC 3 cut(s) 96, 330, 421
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 296, 317
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 4 cut(s) 71, 218, 289, 354
Bsp1286I GDGCHC 3 cut(s) 96, 330, 421
Bsp143I GATC 2 cut(s) 103, 394
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 1 cut(s) 286
BspANI GGCC 4 cut(s) 71, 218, 289, 354
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 98, 389
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 5 cut(s) 73, 108, 150, 213, 349
BssMI GATC 2 cut(s) 103, 394
BssT1I CCWWGG 4 cut(s) 73, 150, 213, 349
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 88, 131
BstAPI GCANNNNNTGC 1 cut(s) 409
BstDEI CTNAG 3 cut(s) 97, 331, 399
BstDSI CCRYGG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 2 cut(s) 106, 397
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 103, 394
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 108, 167
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 4 cut(s) 71, 218, 289, 354
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 14, 70, 165
CviAII CATG 3 cut(s) 214, 322, 467
CviJI RGCY 9 cut(s) 10, 71, 94, 113, 162, 218, 289, 348, 354
CviKI_1 RGCY 9 cut(s) 10, 71, 94, 113, 162, 218, 289, 348, 354
DdeI CTNAG 3 cut(s) 97, 331, 399
DpnI GATC 2 cut(s) 105, 396
DpnII GATC 2 cut(s) 103, 394
EaeI YGGCCR 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 4 cut(s) 73, 150, 213, 349
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 14, 165
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 4 cut(s) 73, 150, 213, 349
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 4 cut(s) 73, 150, 213, 349
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 3 cut(s) 217, 325, 470
FatI CATG 3 cut(s) 213, 321, 466
FauNDI CATATG 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 287, 375
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 287, 375
FspBI CTAG 3 cut(s) 39, 369, 455
GluI GCNGC 2 cut(s) 287, 375
HaeIII GGCC 4 cut(s) 71, 218, 289, 354
HapII CCGG 1 cut(s) 168
Hin1II CATG 3 cut(s) 217, 325, 470
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 168
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 419
HpyCH4III ACNGT 2 cut(s) 88, 131
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 4 cut(s) 377, 412, 419, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 3 cut(s) 97, 331, 399
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 3 cut(s) 217, 325, 470
Kzo9I GATC 2 cut(s) 103, 394
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 8 cut(s) 48, 95, 122, 148, 181, 192, 235, 351
Lsp1109I GCAGC 1 cut(s) 361
MaeI CTAG 3 cut(s) 39, 369, 455
MaeII ACGT 1 cut(s) 142
MalI GATC 2 cut(s) 105, 396
MboI GATC 2 cut(s) 103, 394
MboII GAAGA 1 cut(s) 443
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 3 cut(s) 96, 330, 421
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 2 cut(s) 438, 461
MluNI TGGCCA 1 cut(s) 218
MnlI CCTC 3 cut(s) 408, 417, 483
Mox20I TGGCCA 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 204
MscI TGGCCA 1 cut(s) 218
MseI TTAA 2 cut(s) 459, 481
Msp20I TGGCCA 1 cut(s) 218
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 110, 169
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 409
NciI CCSGG 1 cut(s) 169
NcoI CCATGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 24
NdeII GATC 2 cut(s) 103, 394
NlaIII CATG 3 cut(s) 217, 325, 470
NlaIV GGNNCC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 341
PflFI GACNNNGTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 2 cut(s) 288, 376
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 3 cut(s) 14, 70, 165
PsuI RGATCY 1 cut(s) 103
PsyI GACNNNGTC 1 cut(s) 18
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 459, 481
SatI GCNGC 2 cut(s) 287, 375
Sau3AI GATC 2 cut(s) 103, 394
Sau96I GGNCC 3 cut(s) 14, 70, 165
ScrFI CCNGG 2 cut(s) 110, 169
SduI GDGCHC 3 cut(s) 96, 330, 421
SetI ASST 6 cut(s) 19, 37, 96, 145, 164, 409
SinI GGWCC 2 cut(s) 14, 165
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 2 cut(s) 438, 461
SsiI CCGC 1 cut(s) 286
SspMI CTAG 3 cut(s) 39, 369, 455
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 108, 167
StyI CCWWGG 4 cut(s) 73, 150, 213, 349
TaaI ACNGT 2 cut(s) 88, 131
TaiI ACGT 1 cut(s) 145
TasI AATT 2 cut(s) 438, 461
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 459, 481
Tru9I TTAA 2 cut(s) 459, 481
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 455
TspRI CASTG 1 cut(s) 72
Tth111I GACNNNGTC 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 317
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 2 cut(s) 14, 165
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 3 cut(s) 39, 369, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.