Rmu_sc0011608.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011608.1
OG0000660
Physical Location & Seq
Forward (+)
1 .. 1643
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011608.1_g000001.1.cds

Sequence Viewer

Length: 471 bp
gatctgaagtcttcaaatctcctagttgataagaactggactgtcaaggttggtgattttggtctttcacgtctaaagcatgaaacatttcttacaaccaagactgggaggggaacgccccaatggatggcaccagaagttctacgcaatgaaccctcagatgagaagtcggatgtatatagctacggagtgatattgtgggagcttgttactgaaaagatcccttgggataatctaaactcaatgcaggtgattggagctgtagggttcatgaaccaaagattagagatcccaaaagatattgacccgcaatggatttctttaattgagagctgctggcaaagtgatcctgctagccgaccaacatttcaagagctgctggaaaagcttcgagatctgcagagacaatatgctcttcaattccaagcagcgcggtccgccgcaagtgatagcacccaaaaagaactgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

156

Amino Acids

17.9

Weight (kDa)

5.07

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 127
AccII CGCG 1 cut(s) 433
AciI CCGC 4 cut(s) 308, 433, 438, 441
AclWI GGATC 3 cut(s) 214, 283, 341
AcuI CTGAAG 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 105, 127
AgsI TTSAA 3 cut(s) 15, 371, 419
AjiI CACGTC 1 cut(s) 71
AluBI AGCT 6 cut(s) 183, 205, 260, 333, 376, 388
AluI AGCT 6 cut(s) 183, 205, 260, 333, 376, 388
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 3 cut(s) 214, 283, 341
ApeKI GCWGC 3 cut(s) 333, 376, 428
Asp700I GAANNNNTTC 2 cut(s) 87, 387
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 65, 262
AsuNHI GCTAGC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 3
BbvI GCAGC 3 cut(s) 320, 363, 440
BccI CCATC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 2 cut(s) 23, 354
BfmI CTRYAG 3 cut(s) 261, 398, 467
BfuAI ACCTGC 1 cut(s) 238
BglII AGATCT 1 cut(s) 394
BisI GCNGC 4 cut(s) 334, 377, 429, 441
BlsI GCNGC 4 cut(s) 335, 378, 430, 442
Bme18I GGWCC 1 cut(s) 435
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 132
BmrI ACTGGG 1 cut(s) 114
BmtI GCTAGC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 3
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 127
Bse1I ACTGG 2 cut(s) 41, 109
Bse3DI GCAATG 2 cut(s) 154, 317
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 132, 178
BseLI CCNNNNNNNGG 2 cut(s) 105, 127
BseMI GCAATG 2 cut(s) 154, 317
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 41, 109
BseXI GCAGC 3 cut(s) 320, 363, 440
Bsh1236I CGCG 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 105, 127
BsmAI GTCTC 1 cut(s) 397
Bsp143I GATC 4 cut(s) 219, 288, 346, 394
BspACI CCGC 4 cut(s) 308, 433, 438, 441
BspCNI CTCAG 1 cut(s) 170
BspFNI CGCG 1 cut(s) 433
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 357
BspPI GGATC 3 cut(s) 214, 283, 341
BspQI GCTCTTC 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 2 cut(s) 154, 317
BsrI ACTGG 2 cut(s) 41, 109
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 4 cut(s) 219, 288, 346, 394
BssT1I CCWWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 43, 468
Bst6I CTCTTC 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 338, 355
BstDEI CTNAG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 132, 178
BstFNI CGCG 1 cut(s) 433
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 5 cut(s) 4, 222, 291, 349, 397
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 4 cut(s) 219, 288, 346, 394
BstMWI GCNNNNNNNGC 2 cut(s) 385, 437
BstSFI CTRYAG 3 cut(s) 261, 398, 467
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 3 cut(s) 320, 363, 440
BstV2I GAAGAC 1 cut(s) 3
BstX2I RGATCY 3 cut(s) 219, 288, 394
BstYI RGATCY 3 cut(s) 219, 288, 394
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 132, 178
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 338, 355
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 435
CpoI CGGWCCG 1 cut(s) 435
CspI CGGWCCG 1 cut(s) 435
CviAII CATG 2 cut(s) 80, 271
CviJI RGCY 7 cut(s) 183, 205, 260, 333, 357, 376, 388
CviKI_1 RGCY 7 cut(s) 183, 205, 260, 333, 357, 376, 388
DdeI CTNAG 1 cut(s) 157
DpnI GATC 5 cut(s) 3, 221, 290, 348, 396
DpnII GATC 4 cut(s) 219, 288, 346, 394
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EciI GGCGGA 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 83, 274
FaiI YATR 5 cut(s) 81, 178, 180, 272, 411
FatI CATG 2 cut(s) 79, 270
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 334, 377, 429, 441
FokI GGATG 2 cut(s) 139, 185
Fsp4HI GCNGC 4 cut(s) 334, 377, 429, 441
FspBI CTAG 2 cut(s) 23, 354
GlaI GCGC 1 cut(s) 432
GluI GCNGC 4 cut(s) 334, 377, 429, 441
HhaI GCGC 1 cut(s) 433
Hin1II CATG 2 cut(s) 83, 274
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 386
HphI GGTGA 2 cut(s) 65, 262
Hpy188I TCNGA 3 cut(s) 6, 160, 172
Hpy188III TCNNGA 3 cut(s) 271, 371, 392
HpyCH4III ACNGT 2 cut(s) 43, 468
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 247, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 437
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 2 cut(s) 83, 274
HspAI GCGC 1 cut(s) 431
Kzo9I GATC 4 cut(s) 219, 288, 346, 394
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 2 cut(s) 202, 257
LpnPI CCDG 7 cut(s) 22, 90, 147, 233, 322, 363, 365
Lsp1109I GCAGC 3 cut(s) 320, 363, 440
MaeI CTAG 2 cut(s) 23, 354
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 208
MalI GATC 5 cut(s) 3, 221, 290, 348, 396
MboI GATC 4 cut(s) 219, 288, 346, 394
MboII GAAGA 2 cut(s) 3, 407
MflI RGATCY 3 cut(s) 219, 288, 394
MluCI AATT 2 cut(s) 324, 419
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 2 cut(s) 102, 166
MroXI GAANNNNTTC 2 cut(s) 87, 387
MseI TTAA 1 cut(s) 323
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 385, 437
NdeII GATC 4 cut(s) 219, 288, 346, 394
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 2 cut(s) 83, 274
NlaIV GGNNCC 1 cut(s) 132
PagI TCATGA 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 420
PdmI GAANNNNTTC 2 cut(s) 87, 387
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 4 cut(s) 335, 378, 430, 442
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 435
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 3 cut(s) 219, 288, 394
Rsr2I CGGWCCG 1 cut(s) 435
RsrII CGGWCCG 1 cut(s) 435
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 4 cut(s) 334, 377, 429, 441
Sau3AI GATC 4 cut(s) 219, 288, 346, 394
Sau96I GGNCC 1 cut(s) 435
SetI ASST 9 cut(s) 51, 73, 185, 207, 252, 262, 335, 378, 390
SfcI CTRYAG 3 cut(s) 261, 398, 467
SinI GGWCC 1 cut(s) 435
Sse9I AATT 2 cut(s) 324, 419
SsiI CCGC 4 cut(s) 308, 433, 438, 441
SspMI CTAG 2 cut(s) 23, 354
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 43, 468
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 391
TasI AATT 2 cut(s) 324, 419
TauI GCSGC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TseI GCWGC 3 cut(s) 333, 376, 428
TspDTI ATGAA 4 cut(s) 96, 165, 259, 287
TspGWI ACGGA 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 435
XmnI GAANNNNTTC 2 cut(s) 87, 387
XspI CTAG 2 cut(s) 23, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.