FvH4_4g19790

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000660
Physical Location & Seq
Forward (+)
23329102 .. 23330685
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19790.t1

Sequence Viewer

Length: 951 bp
ATGTCAATGGATGATACTCCACCAGCAGAGGAGCTTCTAAACAAGTTTCAACTACTGGAAGAGGGTCAGGAACACCGCAAGCAAGAACTGCCAACCCTGTTCATCAGGGACTACTCTTATTCCTATGCTGAGCTGGAAAACCAAAGAGCTTTCTCAGTTTTGCCGCAGTATTCAAGATTCTTTTCAAAAAGTAGAATCAGCAGTGGCAGTCAGCTGCCATCAACTCTGAACTTCAGTAATCACCAGTGTCTGAACATATTGCAGTCAATGGGACAATCTGTTTATATATTTGATCTAAACTGTCGTATAATTTACTGGAATAAAGCTGCTGGAGATATATTTGGTTATTCTTTGGCAGAGGCCCTTGGACAGAATGTCGTTGAGCTCGTGGCAGATCCCCAAGCCTTTGCTGTTGGACACAGTATTGCTCAACGTCTCACCATGGGGGAGAGCTGGACAGGGCAGTTCCCAGTCAGGAGCAAAATGGGGGAATCGTTTTCAATCTTTACCACGAATACTCCATTTTGTGATGATGATGATGGCAATTTTATTGGGGTTATTTCCGTCTCAAGTAAGGTCCACCCTTTTCAAGAGAATAGGGTTCACCTGTTAGGTGTTGATGAGCTCCCAGAACCAGATTCAATCTTCGGCCCTTGTAACACTGTTGCAACTCAACTTGGTTTTGATCCTCAGCAGCCTCTACAAAATACAACTGCATCAACATTAACAACTTTGGCAGCCAAGGTGAGCAACAAAGTCAAGACAAAATTCGGTGTAGGAAAAGGCAACTGGGATTGCATAACTGGGAAAGGAGACAATCCTCAGTGTGACCATAGTGAGGATGGGAACTTAAGTGCGGCTAGTTCACCTAGAGGAACTATTACTCCATCTCCTTTCGCTATACTTTCCAAGATCAAAGACAAGTTTCATAAGAATTCCAGATGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

317

Amino Acids

34.9

Weight (kDa)

5.52

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS PF00989 85 - 179 8.3e-10 PAS fold
PAS_8 PF13188 86 - 135 4.1e-06 PAS domain
PAS_4 PF08448 88 - 192 6e-08 PAS fold
PAS_9 PF13426 95 - 189 1.9e-08 PAS domain
PAS_3 PF08447 103 - 189 1.9e-07 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 76, 164, 857
AclWI GGATC 2 cut(s) 389, 680
AcsI RAATTY 2 cut(s) 767, 934
AcuI CTGAAG 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 838
AflII CTTAAG 1 cut(s) 850
AgsI TTSAA 6 cut(s) 50, 174, 186, 501, 590, 642
AhdI GACNNNNNGTC 1 cut(s) 374
AloI GAACNNNNNNTCC 2 cut(s) 868, 900
AluBI AGCT 8 cut(s) 34, 133, 149, 214, 326, 385, 453, 625
AluI AGCT 8 cut(s) 34, 133, 149, 214, 326, 385, 453, 625
Alw21I GWGCWC 2 cut(s) 387, 627
Alw26I GTCTC 3 cut(s) 440, 571, 807
AlwI GGATC 2 cut(s) 389, 680
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 2 cut(s) 360, 649
ApeKI GCWGC 4 cut(s) 214, 326, 694, 737
ApoI RAATTY 2 cut(s) 767, 934
AspS9I GGNCC 3 cut(s) 361, 577, 650
AsuHPI GGTGA 5 cut(s) 233, 430, 596, 757, 858
AvaII GGWCC 1 cut(s) 577
BanII GRGCYC 2 cut(s) 387, 627
BauI CACGAG 1 cut(s) 386
Bbv12I GWGCWC 2 cut(s) 387, 627
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 4 cut(s) 201, 313, 706, 749
BccI CCATC 4 cut(s) 226, 533, 836, 895
BcoDI GTCTC 3 cut(s) 440, 571, 807
BfaI CTAG 2 cut(s) 861, 870
BfrI CTTAAG 1 cut(s) 850
BisI GCNGC 6 cut(s) 164, 215, 327, 695, 738, 858
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 6 cut(s) 165, 216, 328, 696, 739, 859
Bme18I GGWCC 1 cut(s) 577
BmeRI GACNNNNNGTC 1 cut(s) 374
BmgT120I GGNCC 3 cut(s) 361, 577, 650
BmrI ACTGGG 3 cut(s) 464, 799, 813
BmsI GCATC 1 cut(s) 725
BmuI ACTGGG 3 cut(s) 464, 799, 813
BpmI CTGGAG 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 690
Bpu1102I GCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 553
BsaJI CCNNGG 3 cut(s) 364, 441, 741
BsaXI ACNNNNNCTCC 6 cut(s) 502, 532, 868, 874, 898, 904
Bsc4I CCNNNNNNNGG 1 cut(s) 838
Bse1I ACTGG 6 cut(s) 60, 244, 320, 470, 794, 808
BseDI CCNNGG 3 cut(s) 364, 441, 741
BseGI GGATG 2 cut(s) 16, 847
BseLI CCNNNNNNNGG 1 cut(s) 838
BseMII CTCAG 4 cut(s) 120, 168, 704, 836
BseNI ACTGG 6 cut(s) 60, 244, 320, 470, 794, 808
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 4 cut(s) 201, 313, 706, 749
BshFI GGCC 2 cut(s) 362, 651
BsiHKAI GWGCWC 2 cut(s) 387, 627
BslFI GGGAC 2 cut(s) 122, 285
BslI CCNNNNNNNGG 1 cut(s) 838
BsmAI GTCTC 3 cut(s) 440, 571, 807
BsmBI CGTCTC 2 cut(s) 440, 571
BsmFI GGGAC 2 cut(s) 122, 285
BsnI GGCC 2 cut(s) 362, 651
Bsp1286I GDGCHC 2 cut(s) 387, 627
Bsp143I GATC 4 cut(s) 292, 394, 685, 912
Bsp1720I GCTNAGC 1 cut(s) 129
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 3 cut(s) 76, 164, 857
BspANI GGCC 2 cut(s) 362, 651
BspCNI CTCAG 4 cut(s) 121, 167, 703, 835
BspPI GGATC 2 cut(s) 389, 680
BspTI CTTAAG 1 cut(s) 850
BsrI ACTGG 6 cut(s) 60, 244, 320, 470, 794, 808
BssECI CCNNGG 3 cut(s) 364, 441, 741
BssMI GATC 4 cut(s) 292, 394, 685, 912
BssSI CACGAG 1 cut(s) 386
BssT1I CCWWGG 3 cut(s) 364, 441, 741
Bst2BI CACGAG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 302, 422, 664
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 850
BstAPI GCANNNNNTGC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 4 cut(s) 129, 154, 690, 822
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 16, 847
BstKTI GATC 4 cut(s) 295, 397, 688, 915
BstMAI GTCTC 3 cut(s) 440, 571, 807
BstMBI GATC 4 cut(s) 292, 394, 685, 912
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstV1I GCAGC 4 cut(s) 201, 313, 706, 749
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 2 cut(s) 362, 651
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 16, 847
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 4 cut(s) 208, 251, 660, 830
Cac8I GCNNGC 1 cut(s) 80
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 361, 577, 650
CviAII CATG 1 cut(s) 442
DdeI CTNAG 4 cut(s) 129, 154, 690, 822
DpnI GATC 4 cut(s) 294, 396, 687, 914
DpnII GATC 4 cut(s) 292, 394, 685, 912
DriI GACNNNNNGTC 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 54
Eam1105I GACNNNNNGTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 2 cut(s) 385, 625
Eco130I CCWWGG 3 cut(s) 364, 441, 741
Eco24I GRGCYC 2 cut(s) 387, 627
Eco47I GGWCC 1 cut(s) 577
Eco53kI GAGCTC 2 cut(s) 385, 625
Eco57I CTGAAG 1 cut(s) 217
EcoICRI GAGCTC 2 cut(s) 385, 625
EcoO109I RGGNCCY 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 934
EcoT14I CCWWGG 3 cut(s) 364, 441, 741
EcoT38I GRGCYC 2 cut(s) 387, 627
ErhI CCWWGG 3 cut(s) 364, 441, 741
Esp3I CGTCTC 2 cut(s) 440, 571
FaeI CATG 1 cut(s) 445
FaqI GGGAC 2 cut(s) 122, 285
FatI CATG 1 cut(s) 441
Fnu4HI GCNGC 6 cut(s) 164, 215, 327, 695, 738, 858
FokI GGATG 2 cut(s) 23, 854
FriOI GRGCYC 2 cut(s) 387, 627
Fsp4HI GCNGC 6 cut(s) 164, 215, 327, 695, 738, 858
FspBI CTAG 2 cut(s) 861, 870
GluI GCNGC 6 cut(s) 164, 215, 327, 695, 738, 858
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 362, 651
Hin1II CATG 1 cut(s) 445
HinfI GANTC 4 cut(s) 177, 195, 491, 638
HphI GGTGA 5 cut(s) 233, 430, 596, 757, 858
Hpy166II GTNNAC 3 cut(s) 580, 604, 866
Hpy188I TCNGA 2 cut(s) 228, 252
Hpy188III TCNNGA 6 cut(s) 68, 174, 475, 590, 760, 939
Hpy8I GTNNAC 3 cut(s) 580, 604, 866
HpyCH4III ACNGT 3 cut(s) 302, 422, 664
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 4 cut(s) 262, 668, 716, 798
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 4 cut(s) 129, 154, 690, 822
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 1 cut(s) 445
Kzo9I GATC 4 cut(s) 292, 394, 685, 912
LmnI GCTCC 3 cut(s) 31, 477, 630
Lsp1109I GCAGC 4 cut(s) 201, 313, 706, 749
LweI GCATC 1 cut(s) 725
MaeI CTAG 2 cut(s) 861, 870
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 2 cut(s) 656, 827
MalI GATC 4 cut(s) 294, 396, 687, 914
MboI GATC 4 cut(s) 292, 394, 685, 912
MboII GAAGA 2 cut(s) 71, 637
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 387, 627
MluCI AATT 4 cut(s) 309, 544, 767, 934
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 8 cut(s) 22, 55, 352, 699, 708, 831, 832, 866
MseI TTAA 2 cut(s) 725, 851
MspA1I CMGCKG 1 cut(s) 214
MspCI CTTAAG 1 cut(s) 850
MwoI GCNNNNNNNGC 1 cut(s) 88
NcoI CCATGG 1 cut(s) 441
NdeII GATC 4 cut(s) 292, 394, 685, 912
NlaIII CATG 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 827
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PfeI GAWTC 4 cut(s) 177, 195, 491, 638
PkrI GCNGC 6 cut(s) 165, 216, 328, 696, 739, 859
Psp124BI GAGCTC 2 cut(s) 387, 627
PspPI GGNCC 3 cut(s) 361, 577, 650
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 214
SacI GAGCTC 2 cut(s) 387, 627
SaqAI TTAA 2 cut(s) 725, 851
SatI GCNGC 6 cut(s) 164, 215, 327, 695, 738, 858
Sau3AI GATC 4 cut(s) 292, 394, 685, 912
Sau96I GGNCC 3 cut(s) 361, 577, 650
SduI GDGCHC 2 cut(s) 387, 627
SfaNI GCATC 1 cut(s) 725
SinI GGWCC 1 cut(s) 577
SmlI CTYRAG 2 cut(s) 568, 850
SmoI CTYRAG 2 cut(s) 568, 850
Sse9I AATT 4 cut(s) 309, 544, 767, 934
SsiI CCGC 3 cut(s) 76, 164, 857
SspMI CTAG 2 cut(s) 861, 870
SstI GAGCTC 2 cut(s) 387, 627
StyI CCWWGG 3 cut(s) 364, 441, 741
TaaI ACNGT 3 cut(s) 302, 422, 664
TaiI ACGT 1 cut(s) 436
TasI AATT 4 cut(s) 309, 544, 767, 934
TauI GCSGC 2 cut(s) 166, 860
TfiI GAWTC 4 cut(s) 177, 195, 491, 638
Tru1I TTAA 2 cut(s) 725, 851
Tru9I TTAA 2 cut(s) 725, 851
TscAI CASTG 4 cut(s) 208, 251, 667, 830
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 4 cut(s) 214, 326, 694, 737
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 3 cut(s) 91, 917, 936
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 4 cut(s) 208, 251, 667, 830
Vha464I CTTAAG 1 cut(s) 850
VpaK11BI GGWCC 1 cut(s) 577
XapI RAATTY 2 cut(s) 767, 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XspI CTAG 2 cut(s) 861, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.