Rorug04G0202400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000660
Physical Location & Seq
Forward (+)
35145607 .. 35146110
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0202400.1

Sequence Viewer

Length: 414 bp
ATGAAGCAAATGGAACCCAAAACTTATGACTGGTTAACAGATCCTTTGAGACCACCTAAACACTGGTGTAGAGCTCATTTTGGCACCACCCTCAAATGTGATGTTCTTCTCAATAATTTGTGTGAAAGTTTCAATGCTTTCATTTTACCTGCTAGAAGTAAGCCTGTGATTTCATGCTTTGAAGATATTAGAGTCAGGATGATGAAGAGGATTGCTATGAGAAGAGACAAGATGAGCAAAGTTCTGGACCTTATTTGTCCCAAACCTAGAGAACTCCTAGAGAAGAATAAGGTCAAATCTGCAATAGATTGCATACTATATGGCTCTGGCAGCCCCCAAATTAAGGTAGAAAGCTTTGGAGGATCTAAGCATATGGTTGACCTGACCAGGAGGACATGTGCATGTAGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.89

Weight (kDa)

9.69

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AccB1I GGYRCC 1 cut(s) 83
AclWI GGATC 2 cut(s) 35, 370
AfiI CCNNNNNNNGG 1 cut(s) 343
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 133, 182
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 2 cut(s) 74, 354
AluI AGCT 2 cut(s) 74, 354
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 43, 219
AlwI GGATC 2 cut(s) 35, 370
ApeKI GCWGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 247
AvaII GGWCC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 342
BciT130I CCWGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 43, 219
BfaI CTAG 3 cut(s) 153, 267, 278
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 15, 85
BmrFI CCNGG 1 cut(s) 388
BsaI GGTCTC 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 2 cut(s) 35, 68
BseBI CCWGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 343
BseNI ACTGG 2 cut(s) 35, 68
BseXI GCAGC 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 76
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 2 cut(s) 43, 219
BsmFI GGGAC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 2 cut(s) 40, 362
BspLI GGNNCC 2 cut(s) 15, 85
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 2 cut(s) 35, 370
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 35, 68
BssMI GATC 2 cut(s) 40, 362
Bst2UI CCWGG 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 200, 217
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 2 cut(s) 43, 365
BstMAI GTCTC 2 cut(s) 43, 219
BstMBI GATC 2 cut(s) 40, 362
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 388
BstNSI RCATGY 2 cut(s) 399, 405
BstSCI CCNGG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 40, 362
BstYI RGATCY 2 cut(s) 40, 362
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 247
CviAII CATG 3 cut(s) 174, 396, 402
CviJI RGCY 5 cut(s) 74, 163, 324, 333, 354
CviKI_1 RGCY 5 cut(s) 74, 163, 324, 333, 354
DdeI CTNAG 1 cut(s) 366
DpnI GATC 2 cut(s) 42, 364
DpnII GATC 2 cut(s) 40, 362
Eam1104I CTCTTC 2 cut(s) 200, 217
EarI CTCTTC 2 cut(s) 200, 217
Ecl136II GAGCTC 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 76
FaeI CATG 3 cut(s) 177, 399, 405
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 173, 395, 401
FauNDI CATATG 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 3 cut(s) 153, 267, 278
GluI GCNGC 1 cut(s) 331
Hin1II CATG 3 cut(s) 177, 399, 405
HincII GTYRAC 2 cut(s) 36, 379
HindII GTYRAC 2 cut(s) 36, 379
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 1 cut(s) 192
HpaI GTTAAC 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 36, 379
Hpy188III TCNNGA 2 cut(s) 196, 245
Hpy8I GTNNAC 2 cut(s) 36, 379
HpyCH4V TGCA 3 cut(s) 302, 312, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 3 cut(s) 177, 399, 405
KspAI GTTAAC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 40, 362
Lsp1109I GCAGC 1 cut(s) 342
MaeI CTAG 3 cut(s) 153, 267, 278
MalI GATC 2 cut(s) 42, 364
MboI GATC 2 cut(s) 40, 362
MboII GAAGA 5 cut(s) 98, 194, 217, 234, 295
MflI RGATCY 2 cut(s) 40, 362
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 2 cut(s) 115, 339
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 4 cut(s) 101, 201, 353, 384
MseI TTAA 2 cut(s) 35, 342
MslI CAYNNNNRTG 1 cut(s) 400
MspR9I CCNGG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 330
NdeI CATATG 1 cut(s) 372
NdeII GATC 2 cut(s) 40, 362
NlaIII CATG 3 cut(s) 177, 399, 405
NlaIV GGNNCC 2 cut(s) 15, 85
NspI RCATGY 2 cut(s) 399, 405
PciI ACATGT 1 cut(s) 395
PkrI GCNGC 1 cut(s) 332
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PscI ACATGT 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 2 cut(s) 15, 85
PspPI GGNCC 1 cut(s) 247
PsuI RGATCY 2 cut(s) 40, 362
RseI CAYNNNNRTG 1 cut(s) 400
SacI GAGCTC 1 cut(s) 76
SaqAI TTAA 2 cut(s) 35, 342
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 2 cut(s) 40, 362
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 1 cut(s) 76
SetI ASST 9 cut(s) 58, 76, 151, 252, 268, 294, 348, 356, 384
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 400
Sse9I AATT 2 cut(s) 115, 339
SspMI CTAG 3 cut(s) 153, 267, 278
SstI GAGCTC 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 386
TasI AATT 2 cut(s) 115, 339
Tru1I TTAA 2 cut(s) 35, 342
Tru9I TTAA 2 cut(s) 35, 342
TscAI CASTG 1 cut(s) 68
TseI GCWGC 1 cut(s) 330
TspDTI ATGAA 4 cut(s) 17, 130, 162, 218
TspRI CASTG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 247
XceI RCATGY 2 cut(s) 399, 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XspI CTAG 3 cut(s) 153, 267, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.