Rmu_ssc0000209.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000209.1
OG0000660
Physical Location & Seq
Forward (+)
1 .. 1393
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000209.1_g000001.1.cds

Sequence Viewer

Length: 302 bp
gttcatgtggaactgtataccatggtctgtggtacggatcagatgttgctgtcaaggtattctccaggcaagaatattcagaagatgtgatactttccttcagacaagaggtatctcttatgaaaaggcttcgacatccaaatgttctgcttttcatgggagctgtgacttctcccgagcgtctttgcatcgtaacagagttcctcccacgtggaagtttgtttcggttactacaaagaagcacagcaaaactagactggagacgacgtgttcttatggctctggatatagtgagttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.51

Weight (kDa)

9.69

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 17
AclWI GGATC 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 84
AcvI CACGTG 1 cut(s) 211
AfaI GTAC 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 267
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 45
Ama87I CYCGRG 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 74, 106
BbrPI CACGTG 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 197
BpmI CTGGAG 2 cut(s) 48, 279
BsaAI YACGTR 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 255
BsmBI CGTCTC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 175
Bsp143I GATC 1 cut(s) 37
Bsp19I CCATGG 1 cut(s) 21
BspPI GGATC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 37
BssNAI GTATAC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 21
Bst1107I GTATAC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 211
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 21
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 135
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 33
CviAII CATG 3 cut(s) 5, 22, 156
CviJI RGCY 3 cut(s) 129, 163, 280
CviKI_1 RGCY 3 cut(s) 129, 163, 280
CviQI GTAC 1 cut(s) 33
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 84
Eco72I CACGTG 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 3 cut(s) 8, 25, 159
FaiI YATR 7 cut(s) 6, 18, 23, 121, 157, 277, 289
FatI CATG 3 cut(s) 4, 21, 155
FblI GTMKAC 1 cut(s) 17
FokI GGATG 1 cut(s) 122
FspBI CTAG 1 cut(s) 253
GsuI CTGGAG 2 cut(s) 48, 279
HgaI GACGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 8, 25, 159
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 3 cut(s) 42, 81, 103
Hpy188III TCNNGA 2 cut(s) 175, 283
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 210, 267
HpyCH4V TGCA 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 210, 267
Hsp92II CATG 3 cut(s) 8, 25, 159
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 51, 78, 243, 268
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 253
MaeII ACGT 2 cut(s) 210, 267
MaeIII GTNAC 3 cut(s) 165, 192, 227
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 94
MnlI CCTC 2 cut(s) 102, 214
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 37
NlaIII CATG 3 cut(s) 8, 25, 159
NmuCI GTSAC 1 cut(s) 165
PmaCI CACGTG 1 cut(s) 211
PmlI CACGTG 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 64
PspCI CACGTG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 64
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 66
SetI ASST 5 cut(s) 59, 113, 165, 213, 270
SfaNI GCATC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 140
SspI AATATT 1 cut(s) 76
SspMI CTAG 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 2 cut(s) 213, 270
TaqI TCGA 1 cut(s) 132
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 136, 144
TspGWI ACGGA 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 17
XspI CTAG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.