FvH4_4g19783

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000660
Physical Location & Seq
Forward (+)
23324949 .. 23328654
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19783.t1

Sequence Viewer

Length: 468 bp
ATGACCTTTAAGGTTCACCTGTTTGGTGTGGATGAGCTCCCAGAACAAGATCCAAGCTTTGGACACGGAACGACTGTTACAACTCTACTTGGTCTTGATCCTCAGCAGCCTCTACAAAATGCAATTGTATCAAGATTTACATCTTTGTCATCCAAGGTGAGCAACAAAGTCAAATCAAGATTCAGTGCAGGAAAAGACAACTGGGATTACAAGACTGCAAATGGAGACATTCGTCACTCTGACCACAGTGAGGATAGGAACTTAAGTGCGGCTAGCACACCTAGAGGTGTTATACCTCCATCTTCTTTCATAAATGCTGGCGGGATTCTTTTCCAAGCCAAGGTGAGCAGGCGAGATGCTCCCATGCATGCACACGTGCCCTTCATGCAATTAAGGCATTCAAAATGTGGCACCGCGCGGGATGCTCTGCTCCAATTCTGGACAAGGACGATTCGAGGCGCGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

156

Amino Acids

17.12

Weight (kDa)

10.0

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 59
AccII CGCG 3 cut(s) 416, 418, 461
AciI CCGC 4 cut(s) 269, 321, 414, 418
AclWI GGATC 2 cut(s) 44, 92
AcvI CACGTG 1 cut(s) 376
AfiI CCNNNNNNNGG 3 cut(s) 59, 250, 340
AflII CTTAAG 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 1 cut(s) 402
AluBI AGCT 2 cut(s) 37, 57
AluI AGCT 2 cut(s) 37, 57
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 2 cut(s) 44, 92
ApeKI GCWGC 1 cut(s) 106
AspLEI GCGC 2 cut(s) 418, 461
AsuHPI GGTGA 3 cut(s) 8, 169, 355
AsuNHI GCTAGC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 381
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 39
BbrPI CACGTG 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 2 cut(s) 273, 282
BfrI CTTAAG 1 cut(s) 262
BisI GCNGC 2 cut(s) 107, 270
BlsI GCNGC 2 cut(s) 108, 271
BmiI GGNNCC 1 cut(s) 412
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 346, 412
BmtI GCTAGC 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 211
BoxI GACNNNNGTC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 153, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 250, 340
Bse1I ACTGG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 153, 339
BseGI GGATG 3 cut(s) 37, 149, 427
BseJI GATNNNNATC 1 cut(s) 139
BseLI CCNNNNNNNGG 3 cut(s) 59, 250, 340
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 207
Bsh1236I CGCG 3 cut(s) 416, 418, 461
BshNI GGYRCC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 3 cut(s) 59, 250, 340
BsmAI GTCTC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 397
Bsp1286I GDGCHC 2 cut(s) 39, 381
Bsp143I GATC 2 cut(s) 49, 97
BspACI CCGC 4 cut(s) 269, 321, 414, 418
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 3 cut(s) 416, 418, 461
BspLI GGNNCC 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 44, 92
BspT107I GGYRCC 1 cut(s) 410
BspTI CTTAAG 1 cut(s) 262
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 153, 339
BssMI GATC 2 cut(s) 49, 97
BssT1I CCWWGG 2 cut(s) 153, 339
Bst4CI ACNGT 2 cut(s) 76, 248
BstAFI CTTAAG 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 4 cut(s) 274, 319, 350, 369
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 37, 149, 427
BstFNI CGCG 3 cut(s) 416, 418, 461
BstHHI GCGC 2 cut(s) 418, 461
BstKTI GATC 2 cut(s) 52, 100
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 49, 97
BstMWI GCNNNNNNNGC 3 cut(s) 385, 394, 422
BstNSI RCATGY 1 cut(s) 371
BstPAI GACNNNNGTC 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 381
BstUI CGCG 3 cut(s) 416, 418, 461
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsCI GGATG 3 cut(s) 37, 149, 427
BtsIMutI CAGTG 2 cut(s) 190, 253
Cac8I GCNNGC 4 cut(s) 274, 319, 350, 369
CfoI GCGC 2 cut(s) 418, 461
CviAII CATG 3 cut(s) 364, 368, 385
CviJI RGCY 5 cut(s) 37, 57, 109, 272, 338
CviKI_1 RGCY 5 cut(s) 37, 57, 109, 272, 338
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 51, 99
DpnII GATC 2 cut(s) 49, 97
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 153, 339
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
Eco72I CACGTG 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 153, 339
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 2 cut(s) 153, 339
FaeI CATG 3 cut(s) 367, 371, 388
FaiI YATR 5 cut(s) 293, 311, 365, 369, 386
FatI CATG 3 cut(s) 363, 367, 384
FauI CCCGC 2 cut(s) 314, 411
Fnu4HI GCNGC 2 cut(s) 107, 270
FokI GGATG 3 cut(s) 44, 136, 434
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 107, 270
FspBI CTAG 2 cut(s) 273, 282
GlaI GCGC 2 cut(s) 417, 460
GluI GCNGC 2 cut(s) 107, 270
HhaI GCGC 2 cut(s) 418, 461
Hin1II CATG 3 cut(s) 367, 371, 388
Hin6I GCGC 2 cut(s) 416, 459
HinP1I GCGC 2 cut(s) 416, 459
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 3 cut(s) 180, 325, 451
HphI GGTGA 3 cut(s) 8, 169, 355
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 4 cut(s) 95, 132, 177, 439
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 2 cut(s) 76, 248
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 6 cut(s) 122, 188, 218, 367, 371, 388
HpyF10VI GCNNNNNNNGC 3 cut(s) 385, 394, 422
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 3 cut(s) 367, 371, 388
HspAI GCGC 2 cut(s) 416, 459
Kzo9I GATC 2 cut(s) 49, 97
LmnI GCTCC 3 cut(s) 42, 364, 435
LpnPI CCDG 7 cut(s) 32, 54, 174, 187, 303, 334, 424
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 2 cut(s) 346, 412
MaeI CTAG 2 cut(s) 273, 282
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 76, 233
MalI GATC 2 cut(s) 51, 99
MboI GATC 2 cut(s) 49, 97
MboII GAAGA 1 cut(s) 294
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 2 cut(s) 39, 381
MluCI AATT 3 cut(s) 123, 389, 434
MnlI CCTC 6 cut(s) 111, 120, 244, 278, 306, 449
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 3 cut(s) 9, 263, 392
MspCI CTTAAG 1 cut(s) 262
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 397
MvnI CGCG 3 cut(s) 416, 418, 461
MwoI GCNNNNNNNGC 3 cut(s) 385, 394, 422
NdeII GATC 2 cut(s) 49, 97
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 367, 371, 388
NlaIV GGNNCC 1 cut(s) 412
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 1 cut(s) 371
PaeI GCATGC 1 cut(s) 371
PctI GAATGC 1 cut(s) 397
PfeI GAWTC 3 cut(s) 180, 325, 451
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 108, 271
PmaCI CACGTG 1 cut(s) 376
PmlI CACGTG 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 39
PspCI CACGTG 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 412
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PsuI RGATCY 1 cut(s) 49
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 9, 263, 392
SatI GCNGC 2 cut(s) 107, 270
Sau3AI GATC 2 cut(s) 49, 97
SduI GDGCHC 2 cut(s) 39, 381
SfaNI GCATC 2 cut(s) 346, 412
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SphI GCATGC 1 cut(s) 371
Sse9I AATT 3 cut(s) 123, 389, 434
SsiI CCGC 4 cut(s) 269, 321, 414, 418
SspMI CTAG 2 cut(s) 273, 282
SstI GAGCTC 1 cut(s) 39
StyI CCWWGG 2 cut(s) 153, 339
TaaI ACNGT 2 cut(s) 76, 248
TaiI ACGT 1 cut(s) 378
TaqI TCGA 1 cut(s) 454
TasI AATT 3 cut(s) 123, 389, 434
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 3 cut(s) 180, 325, 451
Tru1I TTAA 3 cut(s) 9, 263, 392
Tru9I TTAA 3 cut(s) 9, 263, 392
TscAI CASTG 2 cut(s) 190, 253
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 298, 373
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 2 cut(s) 190, 253
Van91I CCANNNNNTGG 1 cut(s) 59
Vha464I CTTAAG 1 cut(s) 262
XceI RCATGY 1 cut(s) 371
XspI CTAG 2 cut(s) 273, 282
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.