Rmu_sc0001900.1_g000050

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001900.1
OG0000660
Physical Location & Seq
Reverse (-)
236469 .. 238109
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001900.1_g000050.1.cds

Sequence Viewer

Length: 468 bp
ctgaagtcttcaaatctcctagttgataagaactggactgtcaaggttggtgattttggtctttcacgtctaaagcatgaaacatttcttacaaccaagactgggaggggaacgccccaatggatggcaccagaagttctacgcaatgaaccctcagatgagaagtcggatgtatatagctacggagtgatattgtgggagcttgttactgaaaagatcccttgggataatctaaactcaatgcaggtgattggagctgtagggttcatgaaccaaagactagagatcccaaaagatattgacccgcaatggatttctttaattgagagctgctggcaaagtgatcctgctagccgaccaacatttcaagagctgctggaaaagcttcgagatctgcagagacaatatgctcttcaattccaagcagcgcggtccgccgcaagtgatagcacccaaaaagaactgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

155

Amino Acids

17.79

Weight (kDa)

5.24

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 124
AccII CGCG 1 cut(s) 430
AciI CCGC 4 cut(s) 305, 430, 435, 438
AclWI GGATC 3 cut(s) 211, 280, 338
AcuI CTGAAG 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 102, 124
AgsI TTSAA 3 cut(s) 12, 368, 416
AjiI CACGTC 1 cut(s) 68
AluBI AGCT 6 cut(s) 180, 202, 257, 330, 373, 385
AluI AGCT 6 cut(s) 180, 202, 257, 330, 373, 385
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 3 cut(s) 211, 280, 338
ApeKI GCWGC 3 cut(s) 330, 373, 425
Asp700I GAANNNNTTC 2 cut(s) 84, 384
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 62, 259
AsuNHI GCTAGC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 127
BbvI GCAGC 3 cut(s) 317, 360, 437
BccI CCATC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 3 cut(s) 20, 281, 351
BfmI CTRYAG 3 cut(s) 258, 395, 464
BfuAI ACCTGC 1 cut(s) 235
BglII AGATCT 1 cut(s) 391
BisI GCNGC 4 cut(s) 331, 374, 426, 438
BlsI GCNGC 4 cut(s) 332, 375, 427, 439
Bme18I GGWCC 1 cut(s) 432
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 111
BmtI GCTAGC 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 124
Bse1I ACTGG 2 cut(s) 38, 106
Bse3DI GCAATG 2 cut(s) 151, 314
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 2 cut(s) 129, 175
BseLI CCNNNNNNNGG 2 cut(s) 102, 124
BseMI GCAATG 2 cut(s) 151, 314
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 38, 106
BseXI GCAGC 3 cut(s) 317, 360, 437
Bsh1236I CGCG 1 cut(s) 430
BshNI GGYRCC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 102, 124
BsmAI GTCTC 1 cut(s) 394
Bsp143I GATC 4 cut(s) 216, 285, 343, 391
BspACI CCGC 4 cut(s) 305, 430, 435, 438
BspCNI CTCAG 1 cut(s) 167
BspFNI CGCG 1 cut(s) 430
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 354
BspPI GGATC 3 cut(s) 211, 280, 338
BspQI GCTCTTC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 151, 314
BsrI ACTGG 2 cut(s) 38, 106
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 4 cut(s) 216, 285, 343, 391
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 40, 465
Bst6I CTCTTC 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 335, 352
BstDEI CTNAG 1 cut(s) 154
BstF5I GGATG 2 cut(s) 129, 175
BstFNI CGCG 1 cut(s) 430
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 4 cut(s) 219, 288, 346, 394
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 4 cut(s) 216, 285, 343, 391
BstMWI GCNNNNNNNGC 2 cut(s) 382, 434
BstSFI CTRYAG 3 cut(s) 258, 395, 464
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 3 cut(s) 317, 360, 437
BstX2I RGATCY 3 cut(s) 216, 285, 391
BstYI RGATCY 3 cut(s) 216, 285, 391
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 129, 175
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 335, 352
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 432
CpoI CGGWCCG 1 cut(s) 432
CspI CGGWCCG 1 cut(s) 432
CviAII CATG 2 cut(s) 77, 268
CviJI RGCY 7 cut(s) 180, 202, 257, 330, 354, 373, 385
CviKI_1 RGCY 7 cut(s) 180, 202, 257, 330, 354, 373, 385
DdeI CTNAG 1 cut(s) 154
DpnI GATC 4 cut(s) 218, 287, 345, 393
DpnII GATC 4 cut(s) 216, 285, 343, 391
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 80, 271
FaiI YATR 5 cut(s) 78, 175, 177, 269, 408
FatI CATG 2 cut(s) 76, 267
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 4 cut(s) 331, 374, 426, 438
FokI GGATG 2 cut(s) 136, 182
Fsp4HI GCNGC 4 cut(s) 331, 374, 426, 438
FspBI CTAG 3 cut(s) 20, 281, 351
GlaI GCGC 1 cut(s) 429
GluI GCNGC 4 cut(s) 331, 374, 426, 438
HhaI GCGC 1 cut(s) 430
Hin1II CATG 2 cut(s) 80, 271
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 383
HphI GGTGA 2 cut(s) 62, 259
Hpy188I TCNGA 2 cut(s) 157, 169
Hpy188III TCNNGA 3 cut(s) 268, 368, 389
HpyCH4III ACNGT 2 cut(s) 40, 465
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 244, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 434
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 2 cut(s) 80, 271
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 4 cut(s) 216, 285, 343, 391
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 2 cut(s) 199, 254
LpnPI CCDG 7 cut(s) 19, 87, 144, 230, 319, 360, 362
Lsp1109I GCAGC 3 cut(s) 317, 360, 437
MaeI CTAG 3 cut(s) 20, 281, 351
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 205
MalI GATC 4 cut(s) 218, 287, 345, 393
MboI GATC 4 cut(s) 216, 285, 343, 391
MboII GAAGA 1 cut(s) 404
MflI RGATCY 3 cut(s) 216, 285, 391
MluCI AATT 2 cut(s) 321, 416
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 99, 163
MroXI GAANNNNTTC 2 cut(s) 84, 384
MseI TTAA 1 cut(s) 320
MvnI CGCG 1 cut(s) 430
MwoI GCNNNNNNNGC 2 cut(s) 382, 434
NdeII GATC 4 cut(s) 216, 285, 343, 391
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 2 cut(s) 80, 271
NlaIV GGNNCC 1 cut(s) 129
PagI TCATGA 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 417
PdmI GAANNNNTTC 2 cut(s) 84, 384
PflMI CCANNNNNTGG 1 cut(s) 124
PkrI GCNGC 4 cut(s) 332, 375, 427, 439
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 432
PstI CTGCAG 1 cut(s) 399
PsuI RGATCY 3 cut(s) 216, 285, 391
Rsr2I CGGWCCG 1 cut(s) 432
RsrII CGGWCCG 1 cut(s) 432
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 4 cut(s) 331, 374, 426, 438
Sau3AI GATC 4 cut(s) 216, 285, 343, 391
Sau96I GGNCC 1 cut(s) 432
SetI ASST 9 cut(s) 48, 70, 182, 204, 249, 259, 332, 375, 387
SfcI CTRYAG 3 cut(s) 258, 395, 464
SinI GGWCC 1 cut(s) 432
Sse9I AATT 2 cut(s) 321, 416
SsiI CCGC 4 cut(s) 305, 430, 435, 438
SspMI CTAG 3 cut(s) 20, 281, 351
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 40, 465
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 388
TasI AATT 2 cut(s) 321, 416
TauI GCSGC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TseI GCWGC 3 cut(s) 330, 373, 425
TspDTI ATGAA 4 cut(s) 93, 162, 256, 284
TspGWI ACGGA 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 432
XmnI GAANNNNTTC 2 cut(s) 84, 384
XspI CTAG 3 cut(s) 20, 281, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.