FvH4_6g19362

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001944
Physical Location & Seq
Forward (+)
12911351 .. 12920160
8810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19362.t1

Sequence Viewer

Length: 354 bp
ATGGCTAACCAATGTGGTCATGGTTCTAAAGAAGTCAATGGGACAATAAAGGATAAGCAAAGAATAGCCATTGCAAGGGCTATTCTAAAGGACCCAAGAATTCTTTTGCTCGACGAAGCTACAAGTGCACTGGATGCAGAGTCAGACCGCATAGTACAAGATGCTTTGGATAGAGTGATGGTGAATAGAACAACTGTTGTCGTTGCGCACCGCCTTACCACGATCAAAGGAGCAGACATGATAGCTGTGGTCAAGAACGGCGTGATTGCTGAGAAAGGTAGCCATGAAGTTCTAATGAAGATCACCGATGGTTCTTATGCTTCTTTGGTGGCACTCCGTTCAAGCTCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

118

Amino Acids

12.55

Weight (kDa)

8.85

Isoelectric Point (pI)

14.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
AciI CCGC 2 cut(s) 148, 211
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 342
AluBI AGCT 3 cut(s) 119, 245, 345
AluI AGCT 3 cut(s) 119, 245, 345
Alw21I GWGCWC 1 cut(s) 130
Alw44I GTGCAC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 99
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 193, 295
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 2 cut(s) 172, 302
BceAI ACGGC 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 2 cut(s) 124, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 69
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 130
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 222, 300
BspACI CCGC 2 cut(s) 148, 211
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 135
BssMI GATC 2 cut(s) 222, 300
Bst4CI ACNGT 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 225, 303
BstMBI GATC 2 cut(s) 222, 300
BstMWI GCNNNNNNNGC 2 cut(s) 125, 134
BstSLI GKGCMC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 155
CviAII CATG 3 cut(s) 20, 238, 284
CviJI RGCY 7 cut(s) 5, 68, 80, 119, 245, 282, 345
CviKI_1 RGCY 7 cut(s) 5, 68, 80, 119, 245, 282, 345
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 224, 302
DpnII GATC 2 cut(s) 222, 300
Eco47I GGWCC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 99
FaeI CATG 3 cut(s) 23, 241, 287
FaiI YATR 6 cut(s) 21, 152, 239, 285, 318, 352
FaqI GGGAC 1 cut(s) 55
FatI CATG 3 cut(s) 19, 237, 283
FokI GGATG 1 cut(s) 146
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 208
Hin1II CATG 3 cut(s) 23, 241, 287
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 1 cut(s) 140
HphI GGTGA 2 cut(s) 193, 295
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 74, 128, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 134
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 3 cut(s) 23, 241, 287
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 222, 300
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 1 cut(s) 116
LweI GCATC 2 cut(s) 124, 151
MalI GATC 2 cut(s) 224, 302
MboI GATC 2 cut(s) 222, 300
MboII GAAGA 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 125, 134
NdeII GATC 2 cut(s) 222, 300
NlaIII CATG 3 cut(s) 23, 241, 287
NlaIV GGNNCC 1 cut(s) 93
NsbI TGCGCA 1 cut(s) 207
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 91
PspPPI RGGWCCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
Sau3AI GATC 2 cut(s) 222, 300
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 1 cut(s) 130
SetI ASST 4 cut(s) 121, 247, 280, 347
SfaNI GCATC 2 cut(s) 124, 151
SinI GGWCC 1 cut(s) 91
Sse9I AATT 1 cut(s) 99
SsiI CCGC 2 cut(s) 148, 211
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 99
TatI WGTACW 1 cut(s) 154
TscAI CASTG 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 300, 311
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 135
VneI GTGCAC 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.