Rh3AG225700

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001944
Physical Location & Seq
Reverse (-)
23227700 .. 23228817
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG225700.1

Sequence Viewer

Length: 663 bp
ATGGCCACTGTTGTTTCAAAAATGTCAACACGCGGGCAACGTGCTTATGCGGAAGCTGGTAGTATAGTAGAACAGACTGTTGGAGCCATCAGAACAGTTGCATCTTTTACCGGAGAGAGGCAAGCGATAGAAAAATACAACCAAAACCTGAAAATTGCCTACAAAAACATGGTTCAACAAGGACTAGCCACAGGGATTGGACTTGGTACATTCATGCTTATTGTATTTAGCACTTATGGACTTGCCATATGGTACGGATCCAAAATTATCATTGATGTGAAAGGCTATAACGGGGGCCAAGTCATTAATGTTCTATTTGCAATGATGGCTGGTGGAATGTCACTAGGACAGACATCACCGTCTCTCAATGCATTTACAGCAGGGAAGGCTGCTGCATCCAAAATGCTTGAGACCATCAAGCGAATACCAACGATTGATCCCTATGATACTACTGGAGTTGTATTAGAAAATATTATAGGAGAGGTCGAACTTAAAGATGTGTACTTCAGGTATCCTGCTAGGCCAGATGTGCAGATCTTTGCTGGATTCTCATTACATGCATGTTCCAAATGGCACGACGACTGCTTTGGTTGGGCAGAGTGGAAGTGGGAAATCAACAGTGATAGGCCTGGTAGAAAGATTCTACAATCCAGAAGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

220

Amino Acids

24.25

Weight (kDa)

9.16

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 4 - 110 3.2e-17 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 657
AccII CGCG 1 cut(s) 33
AciI CCGC 2 cut(s) 33, 50
AclWI GGATC 3 cut(s) 252, 265, 431
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 490
AfaI GTAC 3 cut(s) 208, 254, 503
AfiI CCNNNNNNNGG 2 cut(s) 117, 657
AgsI TTSAA 2 cut(s) 18, 176
AjnI CCWGG 1 cut(s) 628
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 2 cut(s) 56, 657
AluI AGCT 2 cut(s) 56, 657
Alw26I GTCTC 2 cut(s) 366, 404
AlwI GGATC 3 cut(s) 252, 265, 431
AlwNI CAGNNNCTG 1 cut(s) 657
AoxI GGCC 4 cut(s) 3, 295, 521, 626
ApeKI GCWGC 2 cut(s) 389, 392
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AseI ATTAAT 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 348
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 376, 379
BccI CCATC 3 cut(s) 95, 319, 422
BciT130I CCWGG 1 cut(s) 630
BciVI GTATCC 1 cut(s) 522
BcoDI GTCTC 2 cut(s) 366, 404
BfaI CTAG 3 cut(s) 185, 344, 519
BfuI GTATCC 1 cut(s) 522
BglII AGATCT 1 cut(s) 534
BisI GCNGC 2 cut(s) 390, 393
BlsI GCNGC 2 cut(s) 391, 394
Bme1390I CCNGG 1 cut(s) 630
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 3 cut(s) 85, 259, 296
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 110, 404
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 404
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 657
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 630
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 117, 657
BseMI GCAATG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 457
BseXI GCAGC 2 cut(s) 376, 379
BsgI GTGCAG 1 cut(s) 551
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 5, 297, 523, 628
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 117, 657
BsmAI GTCTC 2 cut(s) 366, 404
BsmBI CGTCTC 1 cut(s) 366
BsnI GGCC 4 cut(s) 5, 297, 523, 628
Bso31I GGTCTC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 257, 436, 534
BspACI CCGC 2 cut(s) 33, 50
BspANI GGCC 4 cut(s) 5, 297, 523, 628
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 85, 259, 296
BspPI GGATC 3 cut(s) 252, 265, 431
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 457
BssMI GATC 3 cut(s) 257, 436, 534
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 5 cut(s) 10, 79, 97, 360, 620
BstC8I GCNNGC 2 cut(s) 35, 123
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 33
BstKTI GATC 3 cut(s) 260, 439, 537
BstMAI GTCTC 2 cut(s) 366, 404
BstMBI GATC 3 cut(s) 257, 436, 534
BstMWI GCNNNNNNNGC 4 cut(s) 326, 377, 386, 529
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 2 cut(s) 560, 564
BstSCI CCNGG 1 cut(s) 628
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 376, 379
BstX2I RGATCY 2 cut(s) 257, 534
BstYI RGATCY 2 cut(s) 257, 534
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 4 cut(s) 5, 297, 523, 628
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 6, 625
Cac8I GCNNGC 2 cut(s) 35, 123
CaiI CAGNNNCTG 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 3 cut(s) 207, 253, 502
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 4 cut(s) 169, 214, 557, 561
CviQI GTAC 3 cut(s) 207, 253, 502
DpnI GATC 3 cut(s) 259, 438, 536
DpnII GATC 3 cut(s) 257, 436, 534
DrdI GACNNNNNNGTC 1 cut(s) 358
DseDI GACNNNNNNGTC 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 628
Eco31I GGTCTC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 628
EcoT22I ATGCAT 2 cut(s) 373, 562
Esp3I CGTCTC 1 cut(s) 366
FaeI CATG 4 cut(s) 172, 217, 560, 564
FatI CATG 4 cut(s) 168, 213, 556, 560
FauI CCCGC 1 cut(s) 26
FauNDI CATATG 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 390, 393
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 2 cut(s) 390, 393
FspBI CTAG 3 cut(s) 185, 344, 519
GluI GCNGC 2 cut(s) 390, 393
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 4 cut(s) 5, 297, 523, 628
HapII CCGG 1 cut(s) 111
Hin1II CATG 4 cut(s) 172, 217, 560, 564
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 2 cut(s) 546, 640
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 348
Hpy166II GTNNAC 2 cut(s) 27, 502
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 1 cut(s) 651
Hpy8I GTNNAC 2 cut(s) 27, 502
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 5 cut(s) 10, 79, 97, 360, 620
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 6 cut(s) 101, 320, 371, 395, 532, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 377, 386, 529
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 4 cut(s) 172, 217, 560, 564
Kzo9I GATC 3 cut(s) 257, 436, 534
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 2 cut(s) 376, 379
LweI GCATC 2 cut(s) 110, 404
MaeI CTAG 3 cut(s) 185, 344, 519
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 339
MalI GATC 3 cut(s) 259, 438, 536
MboI GATC 3 cut(s) 257, 436, 534
MflI RGATCY 2 cut(s) 257, 534
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 153, 264
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 2 cut(s) 111, 475
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 373, 562
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 306, 492
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 4 cut(s) 326, 377, 386, 529
NdeI CATATG 1 cut(s) 248
NdeII GATC 3 cut(s) 257, 436, 534
NlaIII CATG 4 cut(s) 172, 217, 560, 564
NlaIV GGNNCC 3 cut(s) 85, 259, 296
NmuCI GTSAC 1 cut(s) 339
NsiI ATGCAT 2 cut(s) 373, 562
NspI RCATGY 2 cut(s) 560, 564
PceI AGGCCT 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PfeI GAWTC 2 cut(s) 546, 640
PflMI CCANNNNNTGG 1 cut(s) 657
PkrI GCNGC 2 cut(s) 391, 394
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 3 cut(s) 85, 259, 296
PspPI GGNCC 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 657
PsuI RGATCY 2 cut(s) 257, 534
RsaI GTAC 3 cut(s) 208, 254, 503
RsaNI GTAC 3 cut(s) 207, 253, 502
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 2 cut(s) 306, 492
SatI GCNGC 2 cut(s) 390, 393
Sau3AI GATC 3 cut(s) 257, 436, 534
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 630
SetI ASST 6 cut(s) 43, 58, 150, 486, 512, 659
SfaNI GCATC 2 cut(s) 110, 404
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 2 cut(s) 153, 264
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 2 cut(s) 33, 50
SspI AATATT 1 cut(s) 472
SspMI CTAG 3 cut(s) 185, 344, 519
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 1 cut(s) 628
TaaI ACNGT 5 cut(s) 10, 79, 97, 360, 620
TaiI ACGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 486
TasI AATT 2 cut(s) 153, 264
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 2 cut(s) 546, 640
Tru1I TTAA 2 cut(s) 306, 492
Tru9I TTAA 2 cut(s) 306, 492
TscAI CASTG 2 cut(s) 13, 625
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 2 cut(s) 389, 392
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 2 cut(s) 13, 625
Van91I CCANNNNNTGG 1 cut(s) 657
VspI ATTAAT 1 cut(s) 306
XceI RCATGY 2 cut(s) 560, 564
XspI CTAG 3 cut(s) 185, 344, 519
Zsp2I ATGCAT 2 cut(s) 373, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.