Rh4DG026100

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001944
Physical Location & Seq
Reverse (-)
4734381 .. 4749096
14716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG026100.1

Sequence Viewer

Length: 1533 bp
ATGACTGCAAAAAATGCAAGAAATGCATCTTCAGAGTTCCTAAGGTGCTCCGGAGACAAAACCCAGAAGCATATACACCATGTTGTTTCAGTCGGTCCTTTTCATTTCCGAGGGAAGCAAGTCAAGGAGGAAGCAGGTAAAGAAGACAAGAAAGTCAAAGAAGGCAAGGAAGCAAAAGAAGGCAAGGACGACAAAGGCGAGGAAGATTCCCAACTCATGGAACGAGTGAAAGAGAGCTATGTGAAAGAAATTCTCTCAGATATGAAGAATATAACTCTGAAAGAGTTGACCGCAGAAGTCATTAAGCTCTCAGATCAAAAGAATGAAGGCGGGTTTGAGCAACGCGCGCGCGATTTTTATGCCGAACCACTTTATCATATTTCCTCTAAAGACTTCATCGAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTAACGATCCGAAACTCAGGGCCTTTGATGACCCGATATTCAACATGGATTGCATGTTTCATTTCCTGTGCCATGACATTTTGCTCCTAGAGAATCAACTACCTTGGTTTGTCATCCACAGTTTATACGGCCTTACCGTTGACCATGATGAAACCTCCCTATTATCCATTCTCATCCTTAAAGCCTTCAGCATACTACCATCACTGAAGCAAAGTTGCTCAACCTATAATACCCATCTTAGTAAAATCAAGTGTCATTGTGATGCTGATGTCCTGCACATACTTGATCTGGTAAGAGCTTCCATAGTTATTCCATTAAGGACCATAGAAGAGAGAGCGCATAAAGCAGCTGGTAAAGAAGGTATATCCAACCCAGATGAAAATCATATGCATAGTGCAAAGGCAGATCAAAAGCAGATCAGTCCACAAAGCAAGAGTGACAATAAAGCTGTTCGTAAAGCTATTTTTGACCCAGATCAACATCAAATGCATACCGCGACCGCTCTCTCAAAGGCAGACATAAAGTTCCAACCCGTCATAAAGGAGAGCATAATGGACATCCGATTTGAAGAAGGCGGGTGTCGCAGGAATGGGATTCTTAAGATTCCGCAGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCAATCGAGCAATGCTACCATGGTTATTCGAATGAAATTACATCCTATGCCATCTTGATGGATAACCTTATATCTTCCAAGGAAGATATGGACTTACTTTGCAAGGAAAAAGTAATAGGTAACTGGCTGAGTGATGAAGATGGTTGTAAGTTCTTCAGCAACCTTTACAAGGACATCCCGCACAACAAATTCTACTATGGTGCTCTCTGCAAGCAGGTGAATGATCGTTACAAACTCAGGCGGATGTTGCTGTTAAGGTATTCTTCAAGCAAGAATATCCAGATGATGTGCTTCTTTCTTTTAGACAAGAACACTTCTTGGGCTGACAGGTGCCTCTCATCTCAATTTTTCTTACTGGAGACGACGTGTTCAAATGGCTTTGGATATAGCACGAGGCATGAATTATCTTCATCATTTCAACCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

510

Amino Acids

58.51

Weight (kDa)

6.85

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 27 - 450 1.8e-76 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1309
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 2 cut(s) 125, 1309
AccB1I GGYRCC 1 cut(s) 1434
AccB7I CCANNNNNTGG 1 cut(s) 217
AccBSI CCGCTC 1 cut(s) 950
AccII CGCG 5 cut(s) 345, 347, 349, 351, 944
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 8 cut(s) 291, 330, 942, 948, 1023, 1055, 1283, 1345
AclI AACGTT 1 cut(s) 1065
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 2 cut(s) 249, 1292
AcuI CTGAAG 4 cut(s) 15, 619, 674, 1243
AfiI CCNNNNNNNGG 2 cut(s) 217, 1273
AflII CTTAAG 1 cut(s) 1046
AflIII ACRYGT 1 cut(s) 1469
AgsI TTSAA 6 cut(s) 434, 490, 1016, 1371, 1476, 1523
AjiI CACGTC 1 cut(s) 1470
AluBI AGCT 7 cut(s) 237, 307, 746, 797, 896, 908, 1060
AluI AGCT 7 cut(s) 237, 307, 746, 797, 896, 908, 1060
Alw21I GWGCWC 2 cut(s) 50, 1309
Alw26I GTCTC 2 cut(s) 48, 1457
AlwI GGATC 1 cut(s) 449
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 2 cut(s) 468, 577
ApeKI GCWGC 2 cut(s) 794, 1057
ApoI RAATTY 2 cut(s) 249, 1292
ArsI GACNNNNNNTTYG 2 cut(s) 995, 1027
AspLEI GCGC 4 cut(s) 347, 349, 351, 787
AspS9I GGNCC 3 cut(s) 95, 468, 768
AsuHPI GGTGA 1 cut(s) 1333
AsuII TTCGAA 1 cut(s) 1133
AvaII GGWCC 2 cut(s) 95, 768
AxyI CCTNAGG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 1434
BauI CACGAG 1 cut(s) 1495
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 50, 1309
BbvI GCAGC 2 cut(s) 806, 1069
BccI CCATC 5 cut(s) 655, 690, 1156, 1163, 1238
BceAI ACGGC 1 cut(s) 592
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BcoDI GTCTC 2 cut(s) 48, 1457
BfaI CTAG 1 cut(s) 536
BfrI CTTAAG 1 cut(s) 1046
BfuAI ACCTGC 2 cut(s) 125, 1309
BisI GCNGC 2 cut(s) 795, 1058
BlsI GCNGC 2 cut(s) 796, 1059
Bme18I GGWCC 2 cut(s) 95, 768
BmgBI CACGTC 1 cut(s) 1470
BmgT120I GGNCC 3 cut(s) 95, 468, 768
BmiI GGNNCC 2 cut(s) 1097, 1436
BmsI GCATC 2 cut(s) 35, 700
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 1481
Bpu14I TTCGAA 1 cut(s) 1133
BsaBI GATNNNNATC 2 cut(s) 828, 927
BsaJI CCNNGG 4 cut(s) 109, 551, 1123, 1182
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 1454, 1484
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 1273
Bse1I ACTGG 2 cut(s) 1232, 1464
Bse21I CCTNAGG 1 cut(s) 41
Bse3DI GCAATG 2 cut(s) 1101, 1121
Bse8I GATNNNNATC 2 cut(s) 828, 927
BseAI TCCGGA 1 cut(s) 50
BseDI CCNNGG 4 cut(s) 109, 551, 1123, 1182
BseGI GGATG 6 cut(s) 561, 621, 1005, 1145, 1278, 1353
BseJI GATNNNNATC 2 cut(s) 828, 927
BseLI CCNNNNNNNGG 2 cut(s) 217, 1273
BseMI GCAATG 2 cut(s) 1101, 1121
BseMII CTCAG 5 cut(s) 270, 324, 478, 1223, 1354
BseNI ACTGG 2 cut(s) 1232, 1464
BsePI GCGCGC 2 cut(s) 345, 347
BseXI GCAGC 2 cut(s) 806, 1069
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 5 cut(s) 345, 347, 349, 351, 944
Bsh1285I CGRYCG 1 cut(s) 948
BshFI GGCC 2 cut(s) 470, 579
BshNI GGYRCC 1 cut(s) 1434
BsiEI CGRYCG 1 cut(s) 948
BsiHKAI GWGCWC 2 cut(s) 50, 1309
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 217, 1273
BsmAI GTCTC 2 cut(s) 48, 1457
BsmBI CGTCTC 1 cut(s) 1457
BsnI GGCC 2 cut(s) 470, 579
Bsp119I TTCGAA 1 cut(s) 1133
Bsp1286I GDGCHC 2 cut(s) 50, 1309
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 7 cut(s) 313, 454, 733, 853, 864, 922, 1327
Bsp19I CCATGG 1 cut(s) 1123
BspACI CCGC 8 cut(s) 291, 330, 942, 948, 1023, 1055, 1283, 1345
BspANI GGCC 2 cut(s) 470, 579
BspCNI CTCAG 5 cut(s) 269, 323, 477, 1224, 1353
BspEI TCCGGA 1 cut(s) 50
BspFNI CGCG 5 cut(s) 345, 347, 349, 351, 944
BspLI GGNNCC 2 cut(s) 1097, 1436
BspMI ACCTGC 2 cut(s) 125, 1309
BspPI GGATC 1 cut(s) 449
BspT104I TTCGAA 1 cut(s) 1133
BspT107I GGYRCC 1 cut(s) 1434
BspTI CTTAAG 1 cut(s) 1046
BsrBI CCGCTC 1 cut(s) 950
BsrDI GCAATG 2 cut(s) 1101, 1121
BsrI ACTGG 2 cut(s) 1232, 1464
BssECI CCNNGG 4 cut(s) 109, 551, 1123, 1182
BssHII GCGCGC 2 cut(s) 345, 347
BssMI GATC 7 cut(s) 313, 454, 733, 853, 864, 922, 1327
BssSI CACGAG 1 cut(s) 1495
BssT1I CCWWGG 3 cut(s) 551, 1123, 1182
Bst2BI CACGAG 1 cut(s) 1495
Bst4CI ACNGT 4 cut(s) 419, 438, 569, 586
Bst6I CTCTTC 1 cut(s) 771
BstAFI CTTAAG 1 cut(s) 1046
BstAPI GCANNNNNTGC 2 cut(s) 14, 23
BstBI TTCGAA 1 cut(s) 1133
BstC8I GCNNGC 3 cut(s) 347, 349, 1316
BstDEI CTNAG 7 cut(s) 41, 256, 310, 464, 686, 1232, 1340
BstDSI CCRYGG 1 cut(s) 1123
BstENI CCTNNNNNAGG 1 cut(s) 1271
BstF5I GGATG 6 cut(s) 561, 621, 1005, 1145, 1278, 1353
BstFNI CGCG 5 cut(s) 345, 347, 349, 351, 944
BstHHI GCGC 4 cut(s) 347, 349, 351, 787
BstKTI GATC 7 cut(s) 316, 457, 736, 856, 867, 925, 1330
BstMAI GTCTC 2 cut(s) 48, 1457
BstMBI GATC 7 cut(s) 313, 454, 733, 853, 864, 922, 1327
BstMCI CGRYCG 1 cut(s) 948
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 346, 791, 1029, 1351
BstNSI RCATGY 1 cut(s) 505
BstUI CGCG 5 cut(s) 345, 347, 349, 351, 944
BstV1I GCAGC 2 cut(s) 806, 1069
BstV2I GAAGAC 1 cut(s) 150
BstXI CCANNNNNNTGG 1 cut(s) 1162
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 2 cut(s) 470, 579
BtgI CCRYGG 1 cut(s) 1123
BtrI CACGTC 1 cut(s) 1470
BtsCI GGATG 6 cut(s) 561, 621, 1005, 1145, 1278, 1353
BtsIMutI CAGTG 1 cut(s) 650
BveI ACCTGC 2 cut(s) 125, 1309
Cac8I GCNNGC 3 cut(s) 347, 349, 1316
CfoI GCGC 4 cut(s) 347, 349, 351, 787
Cfr13I GGNCC 3 cut(s) 95, 468, 768
CviAII CATG 8 cut(s) 80, 217, 493, 502, 521, 593, 1124, 1502
DdeI CTNAG 7 cut(s) 41, 256, 310, 464, 686, 1232, 1340
DpnI GATC 7 cut(s) 315, 456, 735, 855, 866, 924, 1329
DpnII GATC 7 cut(s) 313, 454, 733, 853, 864, 922, 1327
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
EciI GGCGGA 1 cut(s) 1360
Eco130I CCWWGG 3 cut(s) 551, 1123, 1182
Eco47I GGWCC 2 cut(s) 95, 768
Eco57I CTGAAG 4 cut(s) 15, 619, 674, 1243
Eco81I CCTNAGG 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 1271
EcoO109I RGGNCCY 1 cut(s) 468
EcoT14I CCWWGG 3 cut(s) 551, 1123, 1182
EcoT22I ATGCAT 3 cut(s) 28, 840, 939
ErhI CCWWGG 3 cut(s) 551, 1123, 1182
Esp3I CGTCTC 1 cut(s) 1457
FaeI CATG 8 cut(s) 83, 220, 496, 505, 524, 596, 1127, 1505
FalI AAGNNNNNCTT 2 cut(s) 1351, 1383
FatI CATG 8 cut(s) 79, 216, 492, 501, 520, 592, 1123, 1501
FauI CCCGC 3 cut(s) 323, 1016, 1290
FauNDI CATATG 1 cut(s) 834
Fnu4HI GCNGC 2 cut(s) 795, 1058
FokI GGATG 6 cut(s) 548, 608, 992, 1132, 1265, 1360
Fsp4HI GCNGC 2 cut(s) 795, 1058
FspBI CTAG 1 cut(s) 536
GlaI GCGC 4 cut(s) 346, 348, 350, 786
GluI GCNGC 2 cut(s) 795, 1058
GsuI CTGGAG 1 cut(s) 1481
HaeIII GGCC 2 cut(s) 470, 579
HapII CCGG 1 cut(s) 51
HhaI GCGC 4 cut(s) 347, 349, 351, 787
Hin1II CATG 8 cut(s) 83, 220, 496, 505, 524, 596, 1127, 1505
Hin6I GCGC 4 cut(s) 345, 347, 349, 785
HinP1I GCGC 4 cut(s) 345, 347, 349, 785
HincII GTYRAC 3 cut(s) 288, 415, 589
HindII GTYRAC 3 cut(s) 288, 415, 589
HinfI GANTC 4 cut(s) 206, 541, 1042, 1051
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 1333
Hpy166II GTNNAC 4 cut(s) 288, 415, 589, 872
Hpy188I TCNGA 9 cut(s) 34, 110, 259, 279, 313, 444, 459, 1010, 1081
Hpy188III TCNNGA 5 cut(s) 51, 400, 1093, 1159, 1384
Hpy8I GTNNAC 4 cut(s) 288, 415, 589, 872
Hpy99I CGWCG 1 cut(s) 1471
HpyAV CCTTC 6 cut(s) 155, 173, 320, 643, 800, 1013
HpyCH4III ACNGT 4 cut(s) 419, 438, 569, 586
HpyCH4IV ACGT 2 cut(s) 1065, 1469
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 346, 791, 1029, 1351
HpyF3I CTNAG 7 cut(s) 41, 256, 310, 464, 686, 1232, 1340
HpySE526I ACGT 2 cut(s) 1065, 1469
Hsp92II CATG 8 cut(s) 83, 220, 496, 505, 524, 596, 1127, 1505
HspAI GCGC 4 cut(s) 345, 347, 349, 785
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 7 cut(s) 313, 454, 733, 853, 864, 922, 1327
LmnI GCTCC 2 cut(s) 53, 537
Lsp1109I GCAGC 2 cut(s) 806, 1069
LweI GCATC 2 cut(s) 35, 700
MaeI CTAG 1 cut(s) 536
MaeII ACGT 2 cut(s) 1065, 1469
MaeIII GTNAC 4 cut(s) 449, 884, 1223, 1331
MalI GATC 7 cut(s) 315, 456, 735, 855, 866, 924, 1329
MauBI CGCGCGCG 2 cut(s) 345, 347
MbiI CCGCTC 1 cut(s) 950
MboI GATC 7 cut(s) 313, 454, 733, 853, 864, 922, 1327
MhlI GDGCHC 2 cut(s) 50, 1309
MluCI AATT 6 cut(s) 249, 429, 1140, 1292, 1448, 1505
MmeI TCCRAC 3 cut(s) 840, 1000, 1048
MnlI CCTC 8 cut(s) 104, 121, 193, 394, 613, 1109, 1448, 1491
Mph1103I ATGCAT 3 cut(s) 28, 840, 939
MroI TCCGGA 1 cut(s) 50
MseI TTAA 6 cut(s) 303, 627, 764, 1047, 1358, 1531
MslI CAYNNNNRTG 3 cut(s) 401, 708, 1160
MspA1I CMGCKG 1 cut(s) 797
MspCI CTTAAG 1 cut(s) 1046
MspI CCGG 1 cut(s) 51
MvnI CGCG 5 cut(s) 345, 347, 349, 351, 944
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 346, 791, 1029, 1351
NcoI CCATGG 1 cut(s) 1123
NdeI CATATG 1 cut(s) 834
NdeII GATC 7 cut(s) 313, 454, 733, 853, 864, 922, 1327
NlaIII CATG 8 cut(s) 83, 220, 496, 505, 524, 596, 1127, 1505
NlaIV GGNNCC 2 cut(s) 1097, 1436
NmuCI GTSAC 1 cut(s) 884
NsiI ATGCAT 3 cut(s) 28, 840, 939
NspI RCATGY 1 cut(s) 505
NspV TTCGAA 1 cut(s) 1133
PaqCI CACCTGC 1 cut(s) 1309
PauI GCGCGC 2 cut(s) 345, 347
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 582
PfeI GAWTC 4 cut(s) 206, 541, 1042, 1051
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 2 cut(s) 796, 1059
Psp1406I AACGTT 1 cut(s) 1065
PspN4I GGNNCC 2 cut(s) 1097, 1436
PspPI GGNCC 3 cut(s) 95, 468, 768
PteI GCGCGC 2 cut(s) 345, 347
PvuII CAGCTG 1 cut(s) 797
RseI CAYNNNNRTG 3 cut(s) 401, 708, 1160
SaqAI TTAA 6 cut(s) 303, 627, 764, 1047, 1358, 1531
SatI GCNGC 2 cut(s) 795, 1058
Sau3AI GATC 7 cut(s) 313, 454, 733, 853, 864, 922, 1327
Sau96I GGNCC 3 cut(s) 95, 468, 768
SduI GDGCHC 2 cut(s) 50, 1309
SfaNI GCATC 2 cut(s) 35, 700
SfuI TTCGAA 1 cut(s) 1133
SinI GGWCC 2 cut(s) 95, 768
SmiMI CAYNNNNRTG 3 cut(s) 401, 708, 1160
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
Sse9I AATT 6 cut(s) 249, 429, 1140, 1292, 1448, 1505
SsiI CCGC 8 cut(s) 291, 330, 942, 948, 1023, 1055, 1283, 1345
SspMI CTAG 1 cut(s) 536
StyI CCWWGG 3 cut(s) 551, 1123, 1182
TaaI ACNGT 4 cut(s) 419, 438, 569, 586
TaiI ACGT 2 cut(s) 1068, 1472
TaqI TCGA 3 cut(s) 399, 1110, 1133
TaqII GACCGA 1 cut(s) 83
TasI AATT 6 cut(s) 249, 429, 1140, 1292, 1448, 1505
TfiI GAWTC 4 cut(s) 206, 541, 1042, 1051
Tru1I TTAA 6 cut(s) 303, 627, 764, 1047, 1358, 1531
Tru9I TTAA 6 cut(s) 303, 627, 764, 1047, 1358, 1531
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 2 cut(s) 794, 1057
Tsp45I GTSAC 1 cut(s) 884
TspRI CASTG 1 cut(s) 657
Van91I CCANNNNNTGG 1 cut(s) 217
Vha464I CTTAAG 1 cut(s) 1046
VpaK11BI GGWCC 2 cut(s) 95, 768
XagI CCTNNNNNAGG 1 cut(s) 1271
XapI RAATTY 2 cut(s) 249, 1292
XceI RCATGY 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 1189
XspI CTAG 1 cut(s) 536
Zsp2I ATGCAT 3 cut(s) 28, 840, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.