Rroxscaffold_6G00407420

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001944
Physical Location & Seq
Forward (+)
30094970 .. 30095908
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407420.1

Sequence Viewer

Length: 939 bp
ATGGCTCCTGACTCCAACAAAGCAAAGGACTCAGCAGCTTCAATATTCAAGATTCTTGACAGTAAGCCTAAGATCGACTCGAGCAGCGATGCAGGCTTAACACTACCGAGCATAAGTGGAAAAATTGATCTCGAACATGTCAGCTTCAAATATCCCACAAGGCCGGATGTGCAGATATTTAGAGACGTTTGCTTGAATGTCCCCTCTGGAAAGGTAATTACATATCAACACTCAGTTTATGTTTGTAAATTTTATTGCTTAATGCTTAGCTTAATTAATATTCTATCTACACAGACTGTTGCTTTGGTTGGAGAGAGTGGCAGTGGGAAGTCGACAGTGATTGGCCTCATAGAGAGATTCTATGACCCCGACTCAGGTCGTGTACTATTAGATGGAGTGGAAATCAATAGGTTCAAGATAAACTGGCTGAGGCAACAAATAGGTTTGGTTGGTCAAGAACCAATTCTCTTTAATGCATCCATTCGGACCAATATTGCTTATGGCAAGCGAGGAGATGTAACTGAAGAACAGATCATTGCAGCCACAAAGGCATCAAATGCTCACAATTTCATTTCTTCATTGCCTCAAGGATATGACACTTCAGTTGGGGAACGAGGGGTTCAGTTATCTGGAGGGCAGAAGCAAAGAATAGCCATTGCAAGGGCTATTCTAAAGGACCCGAAAATTCTTTTGCTTGACGAAGCTACAAGCGCACTGGATGCAGAGTCGGAACGCATAGTACAAGATGCTTTAGACAGAGTGATGGTGAATAGAACAACTGTTGTCGTTGCGCACCGCCTTACCACGATCAAAGGGGCAGACATAATTGCTGTGGTCAAGAACGGCGTGATTGCTGAGAAGGGTAGCCATGATCTTCTAATGAAGATCACTCATGGTGCTTATGCGTCTTTGGTGGCACTTCATTCAAGCTCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

312

Amino Acids

33.78

Weight (kDa)

8.63

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 96 - 237 1.1e-31 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 792
AccI GTMKAC 1 cut(s) 332
AciI CCGC 1 cut(s) 796
AcsI RAATTY 2 cut(s) 248, 684
AcuI CTGAAG 2 cut(s) 543, 585
AfaI GTAC 2 cut(s) 384, 741
AfiI CCNNNNNNNGG 2 cut(s) 374, 660
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 6 cut(s) 42, 49, 148, 196, 415, 927
AluBI AGCT 5 cut(s) 38, 144, 270, 704, 930
AluI AGCT 5 cut(s) 38, 144, 270, 704, 930
Alw26I GTCTC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 79
AoxI GGCC 2 cut(s) 161, 343
ApeKI GCWGC 3 cut(s) 35, 84, 539
ApoI RAATTY 2 cut(s) 248, 684
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AseI ATTAAT 1 cut(s) 276
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 2 cut(s) 713, 793
AspS9I GGNCC 2 cut(s) 486, 676
AsuHPI GGTGA 1 cut(s) 778
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 2 cut(s) 486, 676
BbvCI CCTCAGC 1 cut(s) 428
BbvI GCAGC 3 cut(s) 47, 96, 551
BccI CCATC 2 cut(s) 386, 757
BceAI ACGGC 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 548
BisI GCNGC 3 cut(s) 36, 85, 540
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 3 cut(s) 37, 86, 541
Bme18I GGWCC 2 cut(s) 486, 676
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 486, 676
BmiI GGNNCC 2 cut(s) 6, 678
BmsI GCATC 5 cut(s) 79, 485, 560, 709, 736
BoxI GACNNNNGTC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 570
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 660
Bse1I ACTGG 2 cut(s) 428, 720
Bse3DI GCAATG 3 cut(s) 534, 578, 654
BseGI GGATG 3 cut(s) 172, 476, 724
BseLI CCNNNNNNNGG 2 cut(s) 374, 660
BseMI GCAATG 3 cut(s) 534, 578, 654
BseMII CTCAG 5 cut(s) 45, 246, 387, 419, 846
BseNI ACTGG 2 cut(s) 428, 720
BseRI GAGGAG 1 cut(s) 525
BseXI GCAGC 3 cut(s) 47, 96, 551
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 2 cut(s) 163, 345
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 374, 660
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 2 cut(s) 163, 345
BsoBI CYCGRG 1 cut(s) 79
Bsp143I GATC 6 cut(s) 72, 127, 531, 807, 871, 885
Bsp1720I GCTNAGC 1 cut(s) 266
BspACI CCGC 1 cut(s) 796
BspANI GGCC 2 cut(s) 163, 345
BspCNI CTCAG 5 cut(s) 44, 245, 386, 420, 847
BspLI GGNNCC 2 cut(s) 6, 678
BsrDI GCAATG 3 cut(s) 534, 578, 654
BsrI ACTGG 2 cut(s) 428, 720
BssMI GATC 6 cut(s) 72, 127, 531, 807, 871, 885
Bst4CI ACNGT 4 cut(s) 62, 298, 337, 781
BstAPI GCANNNNNTGC 2 cut(s) 557, 719
BstC8I GCNNGC 2 cut(s) 94, 506
BstDEI CTNAG 7 cut(s) 31, 69, 232, 266, 373, 428, 855
BstF5I GGATG 3 cut(s) 172, 476, 724
BstHHI GCGC 2 cut(s) 713, 793
BstKTI GATC 6 cut(s) 75, 130, 534, 810, 874, 888
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 6 cut(s) 72, 127, 531, 807, 871, 885
BstMWI GCNNNNNNNGC 6 cut(s) 93, 169, 548, 557, 710, 719
BstNSI RCATGY 1 cut(s) 140
BstPAI GACNNNNGTC 1 cut(s) 375
BstV1I GCAGC 3 cut(s) 47, 96, 551
BsuRI GGCC 2 cut(s) 163, 345
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 172, 476, 724
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 328, 342, 713
Cac8I GCNNGC 2 cut(s) 94, 506
CfoI GCGC 2 cut(s) 713, 793
Cfr13I GGNCC 2 cut(s) 486, 676
CseI GACGC 1 cut(s) 894
Csp6I GTAC 2 cut(s) 383, 740
CviAII CATG 4 cut(s) 137, 869, 893, 936
CviQI GTAC 2 cut(s) 383, 740
DdeI CTNAG 7 cut(s) 31, 69, 232, 266, 373, 428, 855
DpnI GATC 6 cut(s) 74, 129, 533, 809, 873, 887
DpnII GATC 6 cut(s) 72, 127, 531, 807, 871, 885
Eco47I GGWCC 2 cut(s) 486, 676
Eco57I CTGAAG 2 cut(s) 543, 585
Eco88I CYCGRG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 478
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 4 cut(s) 140, 872, 896, 939
FaqI GGGAC 1 cut(s) 185
FatI CATG 4 cut(s) 136, 868, 892, 935
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 3 cut(s) 36, 85, 540
FokI GGATG 3 cut(s) 179, 463, 731
Fsp4HI GCNGC 3 cut(s) 36, 85, 540
FspI TGCGCA 1 cut(s) 792
GlaI GCGC 2 cut(s) 712, 792
GluI GCNGC 3 cut(s) 36, 85, 540
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 163, 345
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 894
HhaI GCGC 2 cut(s) 713, 793
Hin1II CATG 4 cut(s) 140, 872, 896, 939
Hin6I GCGC 2 cut(s) 711, 791
HinP1I GCGC 2 cut(s) 711, 791
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HinfI GANTC 7 cut(s) 11, 29, 52, 77, 357, 371, 725
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 2 cut(s) 333, 383
Hpy188I TCNGA 2 cut(s) 486, 730
Hpy188III TCNNGA 9 cut(s) 8, 49, 56, 131, 207, 415, 455, 630, 838
Hpy8I GTNNAC 2 cut(s) 333, 383
HpyAV CCTTC 1 cut(s) 853
HpyCH4III ACNGT 4 cut(s) 62, 298, 337, 781
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 6 cut(s) 92, 172, 476, 539, 659, 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 93, 169, 548, 557, 710, 719
HpyF3I CTNAG 7 cut(s) 31, 69, 232, 266, 373, 428, 855
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 4 cut(s) 140, 872, 896, 939
HspAI GCGC 2 cut(s) 711, 791
Kzo9I GATC 6 cut(s) 72, 127, 531, 807, 871, 885
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 21, 78, 177, 192, 360, 409, 615, 701
Lsp1109I GCAGC 3 cut(s) 47, 96, 551
LweI GCATC 5 cut(s) 79, 485, 560, 709, 736
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 517
MalI GATC 6 cut(s) 74, 129, 533, 809, 873, 887
MboI GATC 6 cut(s) 72, 127, 531, 807, 871, 885
MboII GAAGA 4 cut(s) 536, 567, 866, 895
MluCI AATT 8 cut(s) 123, 216, 248, 273, 462, 565, 684, 825
MlyI GAGTC 5 cut(s) 5, 23, 71, 365, 734
MmeI TCCRAC 3 cut(s) 39, 289, 708
MnlI CCTC 7 cut(s) 214, 356, 423, 503, 594, 608, 626
Mph1103I ATGCAT 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 5 cut(s) 98, 260, 272, 276, 471
MspI CCGG 1 cut(s) 164
MwoI GCNNNNNNNGC 6 cut(s) 93, 169, 548, 557, 710, 719
NdeII GATC 6 cut(s) 72, 127, 531, 807, 871, 885
NlaIII CATG 4 cut(s) 140, 872, 896, 939
NlaIV GGNNCC 2 cut(s) 6, 678
NsbI TGCGCA 1 cut(s) 792
NsiI ATGCAT 1 cut(s) 478
NspI RCATGY 1 cut(s) 140
PacI TTAATTAA 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 79
PciI ACATGT 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 52, 357
PkrI GCNGC 3 cut(s) 37, 86, 541
PleI GAGTC 5 cut(s) 5, 23, 71, 365, 733
PpsI GAGTC 5 cut(s) 5, 23, 71, 365, 733
PpuMI RGGWCCY 1 cut(s) 676
PscI ACATGT 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 375
PshBI ATTAAT 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 676
PspN4I GGNNCC 2 cut(s) 6, 678
PspPI GGNCC 2 cut(s) 486, 676
PspPPI RGGWCCY 1 cut(s) 676
PspXI VCTCGAGB 1 cut(s) 79
PsrI GAACNNNNNNTAC 2 cut(s) 723, 755
RsaI GTAC 2 cut(s) 384, 741
RsaNI GTAC 2 cut(s) 383, 740
SalI GTCGAC 1 cut(s) 331
SaqAI TTAA 5 cut(s) 98, 260, 272, 276, 471
SatI GCNGC 3 cut(s) 36, 85, 540
Sau3AI GATC 6 cut(s) 72, 127, 531, 807, 871, 885
Sau96I GGNCC 2 cut(s) 486, 676
SchI GAGTC 5 cut(s) 5, 23, 71, 365, 734
SfaNI GCATC 5 cut(s) 79, 485, 560, 709, 736
Sfr274I CTCGAG 1 cut(s) 79
SinI GGWCC 2 cut(s) 486, 676
SlaI CTCGAG 1 cut(s) 79
SmlI CTYRAG 2 cut(s) 79, 585
SmoI CTYRAG 2 cut(s) 79, 585
Sse9I AATT 8 cut(s) 123, 216, 248, 273, 462, 565, 684, 825
SsiI CCGC 1 cut(s) 796
SspI AATATT 3 cut(s) 45, 280, 493
TaaI ACNGT 4 cut(s) 62, 298, 337, 781
TaiI ACGT 1 cut(s) 189
TaqI TCGA 4 cut(s) 75, 80, 132, 332
TasI AATT 8 cut(s) 123, 216, 248, 273, 462, 565, 684, 825
TatI WGTACW 2 cut(s) 382, 739
TfiI GAWTC 2 cut(s) 52, 357
Tru1I TTAA 5 cut(s) 98, 260, 272, 276, 471
Tru9I TTAA 5 cut(s) 98, 260, 272, 276, 471
TscAI CASTG 3 cut(s) 328, 342, 720
TseI GCWGC 3 cut(s) 35, 84, 539
TspDTI ATGAA 4 cut(s) 559, 567, 896, 911
TspRI CASTG 3 cut(s) 328, 342, 720
VpaK11BI GGWCC 2 cut(s) 486, 676
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 2 cut(s) 248, 684
XceI RCATGY 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 462
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.