Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001944

Physical Location & Seq

Genomic Coordinates Reverse (-)

8394796 .. 8401530

Gene Structure 6735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG093600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3192 bp

ATGGAAGGAGGAGGAGGAGATGGAGATGGAAGAGCCAAAGTTAACGATCTAGACAAGCAGAAGGTCCCGTTCTACAAGCTGTTTCTGTTCGCAGACCAATATGACGTGGGGTTGATGATCGTCGGGAGTATCTGTGCCATCGGAAACGGGCTGTCGCAGCCGTTCATGACGCTCATCTTCGGCAGTCTTATCAATACTTTCGGACATACTGACCGGGCTCATATCGTCCCCATGATTTCTAAGGTGTCTCTAAAATTTGTGTACTTGGGCATTGGTACTGGCATTGCTGCATTTCTACAGGTATCATGTTGGATGGTAACTGGGGAAAGACAGGCCACTCGAATTCGAAGCTTGTACTTGAAAGCAATTTTAAGACAGGACATTGGATATTTTGACACCGAAACTAACACTGGAGAGATCATTGGCAGAATGTCAGGGGACACAATTCTCATTCAAGATGCCATGGGAGAAAAGGTGGGGAAGTTCATTCAACTCCTTTCAACTTTTGTAGGCGGTTTTGTAATTGCTTTGGTCAAAGGATGGCTTCTCACCCTGGTATTACTGTCATGTATTCCCGCTATTGTCTTTGCTGGTGGAGTCATGGCCATTATTGTTTCCAAAATGTCAACACGTGGACAGCGTGCTTATGCGGAAGCTGGCAGTATAGTAGAACAAACAGTTGGAGCCATTCGAACAGTTGCATCTTTTACCGGAGAGAAGCAAGCGATAGAAAAATATAACAAGAAGCTAAAGGTTGCCTACAATAGTACAGTTCAACAAGGACTTGCCACAGGAGTTGGACTTGGTACGTTCATACTTATTGTCTTTGGCACTTATGGACTTGCCATATGGTATGGATCCAAAATGATCATCGAAAAAGGATATAACGGAGGCCAAGTCATCAATGTTATATTTGCAATAATGACGGGTGGAATGTGCCTGGGGCAGACATCACCGTCTTTGAATGCATTTGCAGCAGGGACAGCTGCTGCATACAAAATGCTCGAGACCATCAAACGAACGCCGAAGATTGATCCTTATGATACCTCTGGAGTTGTATTGGACGATATTAAAGGAGAGGTGGAGCTCAAAGACGTCTATTTCAGGTACCCTGCCAGGCCGGACGTGCAGATTTTTGCGGGATTCTCGTTGCATGTTCCGAGTGGCACAACGACTGCTTTGGTTGGGCAGAGTGGAAGTGGGAAGTCAACAGTGATAGGCTTGGTAGAGAGGTTTTATGATCCAGAAGCTGGTGAAGTACTTATAGATGGTGTCGATTTGAAGAAGTTGCATCTTAGATCGATAAGGGAGAAGATTGGGCTTGTAAGTCAAGAGCCGAATCTTTTTACTACAACAATAAGGGAGAACATAGCATATGGGAAGGAAAATGCAACTCAAGAAGAGATTAGAAGAGCAATTGAGCTCGCAAATGCAGCAAAGTTTATTGACAAGTTGCCTCAGGGGCTCGACACAATGGTAGGTGAGCATGGAACATCGCTATCGGGTGGACAAAAGCAAAGAATTGCAATTGCAAGAGCCATTTTAAAGAACCCTAGAATTCTACTTCTGGACGAAGCAACAAGCGCCTTGGATGCTGAGTCGGAGCGAATTGTTCAAGATGCACTGGTGAGATTGATGTCAAATAGAACGACTATAGTTGTTGCACATCGCTTAACAACGATTAGGAATGCTGATGCAATAGCTGTGGTGCATAAAGGGAAAATTGTTGAAATAGGAACTCATGATGACTTGACCCAAAACCCAGAAGGAGCTTACAGCCAACTAATCCGCCTGCAAGAAAGAGCTAAAGAAAAAGTTGCAGAGCCCTCTGATCCAGATAATGGTTTGGATATAGATAGGACAATGAGTAGATCTGGGAGCCAGAGACTTTCAGCAGTGAGATCTTTAAGCAAAGGTTCATCAGGTAGTCGGCGCTCATTCACTATTACTAGCTTTGGTGTTCCTGCTCCAGTTAATTGTGAAGTACAAGTAGAAGAAGAAGATGAGGAGAACCGTGTGAAAACGAAGGTTGATCCGGAGCAACGCAAAAAAGTTTCCATCAAAAGGCTGGCCTATTTGAATAAACCTGAGCTTCCAGTTTTGCTGCTTGGATCTATTGCTGCAGCAGGTCATGGAGTGATTTTTCCTGTCTTCGGCTTACTACTCTCAAAAGCCATCAAGATGTTCTATGAACCGCATAATGAGCTGCGAAAAGACTCCAAAGTTTGGGCAGGAGTGTATGTTGGTATAGGTTTCTTTGGGTTGTTTGTTATTCCAGGGCAAAATTTCTTCTTTGGAATTGCAGGTGGGAAGCTGATTGAGCGAATTCGTGCCTTGACATTCCAAAAAGTTGTACACCAGCAAATTAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCTATTGGTGCAAGGTTGTCTTCTGATGCTTCAACTGTGAAGGCTCTTGTTGGTGACGCATTAGCCTTGATTGCTCAGAACATAGCAACAATCATAGCAGGACTGATTATAGGTTTCGTAGCTAACTGGAGACTAGCGCTTATAATTATAGCTGTGTCGCCATTGTTGATTGGGCAAGGAATACTCCAAACAAAATTTCTTAAAGGGTTTAGTGCCGATGCCAAGGTTATGTATGAAGAAGCAAGTCAAGTGGCAAATGATGCAATTGGTAGCATTCGAACTGTTGCATCATTTTGTTCTGAAAAGAAGGTGATGGATACGTATGAGAAGAAATGTGAAGGTCCAATGAAACAAGGAGTACGACTGGGAGTAGTAAGTGGTACAGGTTTTGGCGCTTCGTTTGTAGTAATGTTCTTCACAAATGCATTAATTTTCTATGTTGGAGCTCATCTTGTGAAAAATGGGCAAGCCACATTTGAACAAGTATTCAGGGTGTTCTTTGCTCTAACTATTTCAGCGGTGGGGGTTTCACAATCTACTGGCATGGCTCCTGACTCCAATAAAGCCAAGGACTCAGCAGCTTCAATATTTCAAATTCTTGATAGCAAGCCTAAGATCGATTCAAGCAGCGATGATGGCATAACACTACCGAGCATTACTGGAGAAATTGATCTTGACCATGTCAGCTTCAAATACCCCACAAGACCAGATGTGCAGATATTCAGGGACATTTGTTTGAAAATCTCTTCTGGAAAGGTTAGTACAAACCACCACCACTCAGTTTATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1063

Amino Acids

114.92

Weight (kDa)

8.93

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	39 - 310	1.3e-61	ABC transporter transmembrane region
ABC_tran	PF00005	381 - 528	1.4e-33	ABC transporter
ABC_membrane	PF00664	702 - 973	7e-60	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46540
fragaria_vesca	FvH4_3g06540 FvH4_6g19120 FvH4_6g19362 FvH4_7g10050
malus_domestica	MD05G1292400.v1.1 MD10G1268300.v1.1 MD10G1268400.v1.1
prunus_persica	Prupe.4G073000_v2.0.a1
pyrus_communis	pycom05g26870 pycom10g22450 pycom10g22470
rosa_chinensis	RchiOBHm_Chr3g0474221 RchiOBHm_Chr3g0474231 RchiOBHm_Chr3g0479341 RchiOBHm_Chr3g0479351 RchiOBHm_Chr5g0012641
rosa_laevigata	RLG00000023583 RLG00000023903 RLG00000023940 RLG00000031931 RLG00000031945
rosa_multiflora	Rmu_sc0015051.1_g000005 Rmu_sc0024687.1_g000002 Rmu_sc0034046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063960 Rroxscaffold_6G00402390 Rroxscaffold_6G00407420
rosa_rugosa	Rorug01G0315600 Rorug02G0062500 Rorug03G0139600 Rorug05G0003300 Rorug05G0003400 Rorug05G0313000
rosa_samantha	Rh3AG190100 Rh3AG225500 Rh3AG225700 Rh3BG219300 Rh4DG026100 Rh5AG097000 Rh5BG093600 Rh5CG106000 Rh5DG092700
rosa_wichuraiana	Rw3G017340 Rw5G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2543
AarI	CACCTGC	1 cut(s)	2294
AasI	GACNNNNNNGTC	1 cut(s)	955
AatII	GACGTC	1 cut(s)	1098
Acc36I	ACCTGC	2 cut(s)	2117, 2294
Acc65I	GGTACC	1 cut(s)	1107
AccB1I	GGYRCC	1 cut(s)	1107
AccB7I	CCANNNNNTGG	3 cut(s)	1250, 1841, 2226
AccIII	TCCGGA	1 cut(s)	2035
AciI	CCGC	7 cut(s)	513, 576, 650, 1139, 1789, 2195, 2918
AclWI	GGATC	8 cut(s)	852, 865, 1028, 1235, 1826, 2027, 2119, 2375
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	8 cut(s)	254, 342, 1557, 2284, 2325, 2389, 2594, 2994
AcvI	CACGTG	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	1095
AfeI	AGCGCT	1 cut(s)	2538
AfiI	CCNNNNNNNGG	5 cut(s)	1250, 1841, 2064, 2153, 2226
AflIII	ACRYGT	1 cut(s)	629
AjiI	CACGTC	2 cut(s)	106, 1126
AjnI	CCWGG	4 cut(s)	552, 939, 1115, 2275
AjuI	GAANNNNNNNTTGG	4 cut(s)	663, 695, 2580, 2612
Alw21I	GWGCWC	3 cut(s)	1089, 1425, 2848
Alw26I	GTCTC	4 cut(s)	252, 1001, 1879, 2524
AlwI	GGATC	8 cut(s)	852, 865, 1028, 1235, 1826, 2027, 2119, 2375
AlwNI	CAGNNNCTG	2 cut(s)	989, 1250
Ama87I	CYCGRG	1 cut(s)	1004
Aor13HI	TCCGGA	1 cut(s)	2035
Aor51HI	AGCGCT	1 cut(s)	2538
AoxI	GGCC	5 cut(s)	333, 603, 892, 1118, 2070
ApoI	RAATTY	8 cut(s)	254, 342, 1557, 2284, 2325, 2389, 2594, 2994
AseI	ATTAAT	1 cut(s)	2828
Asp718I	GGTACC	1 cut(s)	1107
AspLEI	GCGC	4 cut(s)	1586, 1935, 2539, 2795
AspS9I	GGNCC	2 cut(s)	64, 2741
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	7 cut(s)	541, 945, 1265, 1493, 1639, 2465, 2722
AsuII	TTCGAA	3 cut(s)	346, 691, 2677
AvaI	CYCGRG	1 cut(s)	1004
AvaII	GGWCC	2 cut(s)	64, 2741
AxyI	CCTNAGG	1 cut(s)	1458
BalI	TGGCCA	1 cut(s)	605
BamHI	GGATCC	1 cut(s)	857
BanI	GGYRCC	1 cut(s)	1107
BanII	GRGCYC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
BbrPI	CACGTG	1 cut(s)	632
BbsI	GAAGAC	2 cut(s)	2143, 2412
Bbv12I	GWGCWC	3 cut(s)	1089, 1425, 2848
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	4 cut(s)	554, 941, 1117, 2277
BciVI	GTATCC	1 cut(s)	2710
BclI	TGATCA	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	4 cut(s)	252, 1001, 1879, 2524
BfaI	CTAG	4 cut(s)	50, 1554, 1950, 2534
BfmI	CTRYAG	3 cut(s)	296, 1653, 2121
BfoI	RGCGCY	4 cut(s)	1587, 1936, 2540, 2796
BfuAI	ACCTGC	2 cut(s)	2117, 2294
BfuI	GTATCC	1 cut(s)	2710
BglI	GCCNNNNNGGC	1 cut(s)	1462
BglII	AGATCT	2 cut(s)	1871, 1901
BmcAI	AGTACT	1 cut(s)	1260
Bme1390I	CCNGG	5 cut(s)	215, 554, 941, 1117, 2277
Bme18I	GGWCC	2 cut(s)	64, 2741
BmeT110I	CYCGRG	1 cut(s)	1004
BmgBI	CACGTC	2 cut(s)	106, 1126
BmgT120I	GGNCC	2 cut(s)	64, 2741
BmiI	GGNNCC	6 cut(s)	66, 685, 859, 1109, 1880, 2949
BmrFI	CCNGG	5 cut(s)	215, 554, 941, 1117, 2277
BmrI	ACTGGG	2 cut(s)	330, 2774
BmuI	ACTGGG	2 cut(s)	330, 2774
BpiI	GAAGAC	2 cut(s)	2143, 2412
BpmI	CTGGAG	5 cut(s)	432, 1071, 1953, 2548, 3081
Bpu10I	CCTNAGC	1 cut(s)	2088
Bpu14I	TTCGAA	3 cut(s)	346, 691, 2677
BpuEI	CTTGAG	1 cut(s)	1380
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	2 cut(s)	1301, 3018
BsaAI	YACGTR	2 cut(s)	632, 2721
BsaHI	GRCGYC	1 cut(s)	1095
BsaI	GGTCTC	1 cut(s)	1001
BsaJI	CCNNGG	7 cut(s)	462, 552, 940, 1587, 2276, 2622, 2967
BsaWI	WCCGGW	2 cut(s)	710, 2035
BsaXI	ACNNNNNCTCC	8 cut(s)	118, 148, 459, 489, 882, 912, 2226, 2256
Bsc4I	CCNNNNNNNGG	5 cut(s)	1250, 1841, 2064, 2153, 2226
Bse21I	CCTNAGG	1 cut(s)	1458
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	2035
BseBI	CCWGG	4 cut(s)	554, 941, 1117, 2277
BseCI	ATCGAT	2 cut(s)	1301, 3018
BseDI	CCNNGG	7 cut(s)	462, 552, 940, 1587, 2276, 2622, 2967
BseGI	GGATG	3 cut(s)	318, 545, 1597
BseLI	CCNNNNNNNGG	5 cut(s)	1250, 1841, 2064, 2153, 2226
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	6 cut(s)	1472, 1587, 2079, 2489, 2988, 3192
BseRI	GAGGAG	4 cut(s)	24, 27, 30, 2021
BsgI	GTGCAG	2 cut(s)	1148, 3134
BshFI	GGCC	5 cut(s)	335, 605, 894, 1120, 2072
BshNI	GGYRCC	1 cut(s)	1107
BshVI	ATCGAT	2 cut(s)	1301, 3018
BsiHKAI	GWGCWC	3 cut(s)	1089, 1425, 2848
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	4 cut(s)	214, 711, 1121, 2036
BslFI	GGGAC	5 cut(s)	50, 212, 452, 994, 3140
BslI	CCNNNNNNNGG	5 cut(s)	1250, 1841, 2064, 2153, 2226
BsmAI	GTCTC	4 cut(s)	252, 1001, 1879, 2524
BsmFI	GGGAC	5 cut(s)	50, 212, 452, 994, 3140
BsmI	GAATGC	3 cut(s)	970, 1693, 2673
BsnI	GGCC	5 cut(s)	335, 605, 894, 1120, 2072
Bso31I	GGTCTC	1 cut(s)	1001
BsoBI	CYCGRG	1 cut(s)	1004
Bsp119I	TTCGAA	3 cut(s)	346, 691, 2677
Bsp1286I	GDGCHC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
Bsp13I	TCCGGA	1 cut(s)	2035
Bsp1407I	TGTACA	1 cut(s)	2353
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	7 cut(s)	513, 576, 650, 1139, 1789, 2195, 2918
BspANI	GGCC	5 cut(s)	335, 605, 894, 1120, 2072
BspCNI	CTCAG	6 cut(s)	1471, 1588, 2080, 2488, 2987, 3191
BspDI	ATCGAT	2 cut(s)	1301, 3018
BspEI	TCCGGA	1 cut(s)	2035
BspHI	TCATGA	2 cut(s)	165, 1741
BspLI	GGNNCC	6 cut(s)	66, 685, 859, 1109, 1880, 2949
BspMAI	CTGCAG	1 cut(s)	2125
BspMI	ACCTGC	2 cut(s)	2117, 2294
BspPI	GGATC	8 cut(s)	852, 865, 1028, 1235, 1826, 2027, 2119, 2375
BspQI	GCTCTTC	2 cut(s)	25, 1405
BspT104I	TTCGAA	3 cut(s)	346, 691, 2677
BspT107I	GGYRCC	1 cut(s)	1107
BspTNI	GGTCTC	1 cut(s)	1001
BsrDI	GCAATG	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	2353
BssECI	CCNNGG	7 cut(s)	462, 552, 940, 1587, 2276, 2622, 2967
BssNI	GRCGYC	1 cut(s)	1095
BssT1I	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
Bst2UI	CCWGG	4 cut(s)	554, 941, 1117, 2277
Bst4CI	ACNGT	9 cut(s)	564, 679, 697, 772, 957, 1213, 2015, 2437, 2683
Bst6I	CTCTTC	4 cut(s)	25, 1395, 1405, 3151
BstACI	GRCGYC	1 cut(s)	1095
BstAPI	GCANNNNNTGC	1 cut(s)	2660
BstAUI	TGTACA	1 cut(s)	2353
BstBAI	YACGTR	2 cut(s)	632, 2721
BstBI	TTCGAA	3 cut(s)	346, 691, 2677
BstC8I	GCNNGC	8 cut(s)	642, 658, 723, 1425, 1793, 2070, 2868, 3008
BstDEI	CTNAG	9 cut(s)	240, 1295, 1458, 1596, 2088, 2475, 2974, 3012, 3178
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	318, 545, 1597
BstH2I	RGCGCY	4 cut(s)	1587, 1936, 2540, 2796
BstHHI	GCGC	4 cut(s)	1586, 1935, 2539, 2795
BstMAI	GTCTC	4 cut(s)	252, 1001, 1879, 2524
BstNI	CCWGG	4 cut(s)	554, 941, 1117, 2277
BstNSI	RCATGY	1 cut(s)	1157
BstSCI	CCNGG	5 cut(s)	213, 552, 939, 1115, 2275
BstSFI	CTRYAG	3 cut(s)	296, 1653, 2121
BstSNI	TACGTA	1 cut(s)	2721
BstV2I	GAAGAC	2 cut(s)	2143, 2412
BstX2I	RGATCY	4 cut(s)	857, 1871, 1901, 2111
BstYI	RGATCY	4 cut(s)	857, 1871, 1901, 2111
Bsu15I	ATCGAT	2 cut(s)	1301, 3018
Bsu36I	CCTNAGG	1 cut(s)	1458
BsuI	GTATCC	1 cut(s)	2710
BsuRI	GGCC	5 cut(s)	335, 605, 894, 1120, 2072
BsuTUI	ATCGAT	2 cut(s)	1301, 3018
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	3 cut(s)	1479, 1652, 3045
BtrI	CACGTC	2 cut(s)	106, 1126
BtsCI	GGATG	3 cut(s)	318, 545, 1597
BtsI	GCAGTG	1 cut(s)	1902
BtsIMutI	CAGTG	4 cut(s)	408, 1218, 1622, 1902
BveI	ACCTGC	2 cut(s)	2117, 2294
Cac8I	GCNNGC	8 cut(s)	642, 658, 723, 1425, 1793, 2070, 2868, 3008
CaiI	CAGNNNCTG	2 cut(s)	989, 1250
CciI	TCATGA	2 cut(s)	165, 1741
CfoI	GCGC	4 cut(s)	1586, 1935, 2539, 2795
Cfr13I	GGNCC	2 cut(s)	64, 2741
ClaI	ATCGAT	2 cut(s)	1301, 3018
CseI	GACGC	2 cut(s)	178, 2465
CspCI	CAANNNNNGTGG	6 cut(s)	778, 813, 1686, 1721, 2631, 2666
DdeI	CTNAG	9 cut(s)	240, 1295, 1458, 1596, 2088, 2475, 2974, 3012, 3178
DraI	TTTAAA	1 cut(s)	1545
DrdI	GACNNNNNNGTC	1 cut(s)	955
DseDI	GACNNNNNNGTC	1 cut(s)	955
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	4 cut(s)	25, 1395, 1405, 3151
EarI	CTCTTC	4 cut(s)	25, 1395, 1405, 3151
EciI	GGCGGA	1 cut(s)	1778
Ecl136II	GAGCTC	3 cut(s)	1087, 1423, 2846
Eco105I	TACGTA	1 cut(s)	2721
Eco130I	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
Eco24I	GRGCYC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
Eco31I	GGTCTC	1 cut(s)	1001
Eco47I	GGWCC	2 cut(s)	64, 2741
Eco47III	AGCGCT	1 cut(s)	2538
Eco53kI	GAGCTC	3 cut(s)	1087, 1423, 2846
Eco72I	CACGTG	1 cut(s)	632
Eco81I	CCTNAGG	1 cut(s)	1458
Eco88I	CYCGRG	1 cut(s)	1004
EcoICRI	GAGCTC	3 cut(s)	1087, 1423, 2846
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	3 cut(s)	342, 1557, 2325
EcoRII	CCWGG	4 cut(s)	552, 939, 1115, 2275
EcoT14I	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
EcoT22I	ATGCAT	2 cut(s)	970, 2827
EcoT38I	GRGCYC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
ErhI	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
FalI	AAGNNNNNCTT	4 cut(s)	528, 560, 2404, 2436
FaqI	GGGAC	5 cut(s)	50, 212, 452, 994, 3140
FauI	CCCGC	2 cut(s)	583, 1132
FauNDI	CATATG	2 cut(s)	848, 1375
FbaI	TGATCA	1 cut(s)	867
FokI	GGATG	3 cut(s)	325, 552, 1604
FriOI	GRGCYC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
FspBI	CTAG	4 cut(s)	50, 1554, 1950, 2534
GlaI	GCGC	4 cut(s)	1585, 1934, 2538, 2794
GsuI	CTGGAG	5 cut(s)	432, 1071, 1953, 2548, 3081
HaeII	RGCGCY	4 cut(s)	1587, 1936, 2540, 2796
HaeIII	GGCC	5 cut(s)	335, 605, 894, 1120, 2072
HapII	CCGG	4 cut(s)	214, 711, 1121, 2036
HgaI	GACGC	2 cut(s)	178, 2465
HhaI	GCGC	4 cut(s)	1586, 1935, 2539, 2795
Hin1I	GRCGYC	1 cut(s)	1095
Hin6I	GCGC	4 cut(s)	1584, 1933, 2537, 2793
HinP1I	GCGC	4 cut(s)	1584, 1933, 2537, 2793
HincII	GTYRAC	3 cut(s)	43, 627, 1209
HindII	GTYRAC	3 cut(s)	43, 627, 1209
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	8 cut(s)	597, 1143, 1339, 1598, 2216, 2954, 2972, 3020
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	4 cut(s)	214, 711, 1121, 2036
HphI	GGTGA	7 cut(s)	541, 945, 1265, 1493, 1639, 2465, 2722
Hpy166II	GTNNAC	7 cut(s)	43, 262, 627, 635, 1209, 1508, 2356
Hpy188I	TCNGA	8 cut(s)	143, 203, 1161, 1603, 1831, 2425, 2478, 2701
Hpy8I	GTNNAC	7 cut(s)	43, 262, 627, 635, 1209, 1508, 2356
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	7 cut(s)	55, 1375, 1760, 2020, 2434, 2701, 2732
HpyCH4III	ACNGT	9 cut(s)	564, 679, 697, 772, 957, 1213, 2015, 2437, 2683
HpyCH4IV	ACGT	6 cut(s)	105, 631, 809, 1095, 1125, 2720
HpyF3I	CTNAG	9 cut(s)	240, 1295, 1458, 1596, 2088, 2475, 2974, 3012, 3178
HpySE526I	ACGT	6 cut(s)	105, 631, 809, 1095, 1125, 2720
Hsp92I	GRCGYC	1 cut(s)	1095
HspAI	GCGC	4 cut(s)	1584, 1933, 2537, 2793
Kpn2I	TCCGGA	1 cut(s)	2035
KpnI	GGTACC	1 cut(s)	1111
Ksp22I	TGATCA	1 cut(s)	867
KspAI	GTTAAC	1 cut(s)	43
LguI	GCTCTTC	2 cut(s)	25, 1405
LmnI	GCTCC	9 cut(s)	683, 1084, 1603, 1769, 1878, 1972, 2038, 2843, 2953
MaeI	CTAG	4 cut(s)	50, 1554, 1950, 2534
MaeII	ACGT	6 cut(s)	105, 631, 809, 1095, 1125, 2720
MaeIII	GTNAC	2 cut(s)	316, 2453
MfeI	CAATTG	3 cut(s)	1416, 1527, 2664
MflI	RGATCY	4 cut(s)	857, 1871, 1901, 2111
MhlI	GDGCHC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
MlsI	TGGCCA	1 cut(s)	605
MluNI	TGGCCA	1 cut(s)	605
MlyI	GAGTC	5 cut(s)	606, 1607, 2210, 2948, 2966
MmeI	TCCRAC	5 cut(s)	290, 661, 778, 1581, 2821
MnlI	CCTC	9 cut(s)	5, 8, 884, 1057, 1072, 1224, 1467, 1837, 1999
Mox20I	TGGCCA	1 cut(s)	605
Mph1103I	ATGCAT	2 cut(s)	970, 2827
MroI	TCCGGA	1 cut(s)	2035
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	9 cut(s)	42, 371, 1071, 1544, 1673, 1907, 1974, 2601, 2828
MslI	CAYNNNNRTG	1 cut(s)	2180
Msp20I	TGGCCA	1 cut(s)	605
MspA1I	CMGCKG	2 cut(s)	986, 2918
MspI	CCGG	4 cut(s)	214, 711, 1121, 2036
MspR9I	CCNGG	5 cut(s)	215, 554, 941, 1117, 2277
MunI	CAATTG	3 cut(s)	1416, 1527, 2664
Mva1269I	GAATGC	3 cut(s)	970, 1693, 2673
MvaI	CCWGG	4 cut(s)	554, 941, 1117, 2277
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	462
NdeI	CATATG	2 cut(s)	848, 1375
NlaIV	GGNNCC	6 cut(s)	66, 685, 859, 1109, 1880, 2949
NmuCI	GTSAC	1 cut(s)	2453
NsiI	ATGCAT	2 cut(s)	970, 2827
NspI	RCATGY	1 cut(s)	1157
NspV	TTCGAA	3 cut(s)	346, 691, 2677
PaeR7I	CTCGAG	1 cut(s)	1004
PagI	TCATGA	2 cut(s)	165, 1741
PaqCI	CACCTGC	1 cut(s)	2294
PciSI	GCTCTTC	2 cut(s)	25, 1405
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	3 cut(s)	970, 1693, 2673
PfeI	GAWTC	3 cut(s)	1143, 1339, 3020
PflFI	GACNNNGTC	1 cut(s)	3080
PflMI	CCANNNNNTGG	3 cut(s)	1250, 1841, 2226
PleI	GAGTC	5 cut(s)	605, 1606, 2210, 2948, 2966
PmaCI	CACGTG	1 cut(s)	632
PmlI	CACGTG	1 cut(s)	632
PpsI	GAGTC	5 cut(s)	605, 1606, 2210, 2948, 2966
Ppu21I	YACGTR	2 cut(s)	632, 2721
PpuMI	RGGWCCY	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	2828
PsiI	TTATAA	1 cut(s)	2543
Psp124BI	GAGCTC	3 cut(s)	1089, 1425, 2848
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	4 cut(s)	552, 939, 1115, 2275
PspCI	CACGTG	1 cut(s)	632
PspGI	CCWGG	4 cut(s)	552, 939, 1115, 2275
PspN4I	GGNNCC	6 cut(s)	66, 685, 859, 1109, 1880, 2949
PspPI	GGNCC	2 cut(s)	64, 2741
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	2125
PstNI	CAGNNNCTG	2 cut(s)	989, 1250
PsuI	RGATCY	4 cut(s)	857, 1871, 1901, 2111
PsyI	GACNNNGTC	1 cut(s)	3080
PvuII	CAGCTG	1 cut(s)	986
RseI	CAYNNNNRTG	1 cut(s)	2180
SacI	GAGCTC	3 cut(s)	1089, 1425, 2848
SapI	GCTCTTC	2 cut(s)	25, 1405
SaqAI	TTAA	9 cut(s)	42, 371, 1071, 1544, 1673, 1907, 1974, 2601, 2828
Sau96I	GGNCC	2 cut(s)	64, 2741
ScaI	AGTACT	1 cut(s)	1260
SchI	GAGTC	5 cut(s)	606, 1607, 2210, 2948, 2966
ScrFI	CCNGG	5 cut(s)	215, 554, 941, 1117, 2277
SduI	GDGCHC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
SfcI	CTRYAG	3 cut(s)	296, 1653, 2121
Sfr274I	CTCGAG	1 cut(s)	1004
SfuI	TTCGAA	3 cut(s)	346, 691, 2677
SinI	GGWCC	2 cut(s)	64, 2741
SlaI	CTCGAG	1 cut(s)	1004
SmiMI	CAYNNNNRTG	1 cut(s)	2180
SmlI	CTYRAG	2 cut(s)	1004, 1395
SmoI	CTYRAG	2 cut(s)	1004, 1395
SnaBI	TACGTA	1 cut(s)	2721
SsiI	CCGC	7 cut(s)	513, 576, 650, 1139, 1789, 2195, 2918
SspI	AATATT	1 cut(s)	2988
SspMI	CTAG	4 cut(s)	50, 1554, 1950, 2534
SstI	GAGCTC	3 cut(s)	1089, 1425, 2848
StyD4I	CCNGG	5 cut(s)	213, 552, 939, 1115, 2275
StyI	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
TaaI	ACNGT	9 cut(s)	564, 679, 697, 772, 957, 1213, 2015, 2437, 2683
TaiI	ACGT	6 cut(s)	108, 634, 812, 1098, 1128, 2723
TatI	WGTACW	7 cut(s)	261, 354, 767, 1258, 1984, 2353, 3161
TfiI	GAWTC	3 cut(s)	1143, 1339, 3020
Tru1I	TTAA	9 cut(s)	42, 371, 1071, 1544, 1673, 1907, 1974, 2601, 2828
Tru9I	TTAA	9 cut(s)	42, 371, 1071, 1544, 1673, 1907, 1974, 2601, 2828
TscAI	CASTG	4 cut(s)	415, 1218, 1629, 1902
TseFI	GTSAC	1 cut(s)	2453
Tsp45I	GTSAC	1 cut(s)	2453
TspDTI	ATGAA	7 cut(s)	154, 475, 802, 1908, 2205, 2649, 2762
TspGWI	ACGGA	1 cut(s)	903
TspRI	CASTG	4 cut(s)	415, 1218, 1629, 1902
Tth111I	GACNNNGTC	1 cut(s)	3080
Van91I	CCANNNNNTGG	3 cut(s)	1250, 1841, 2226
VpaK11BI	GGWCC	2 cut(s)	64, 2741
VspI	ATTAAT	1 cut(s)	2828
XapI	RAATTY	8 cut(s)	254, 342, 1557, 2284, 2325, 2389, 2594, 2994
XbaI	TCTAGA	1 cut(s)	49
XceI	RCATGY	1 cut(s)	1157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2065
XhoI	CTCGAG	1 cut(s)	1004
XspI	CTAG	4 cut(s)	50, 1554, 1950, 2534
ZraI	GACGTC	1 cut(s)	1096
ZrmI	AGTACT	1 cut(s)	1260
Zsp2I	ATGCAT	2 cut(s)	970, 2827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.