RchiOBHm_Chr3g0479351

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001944
Physical Location & Seq
Reverse (-)
25180269 .. 25182607
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44445

Sequence Viewer

Length: 1494 bp
ATGGAACCAGGAGGAGAGAGGACAATGTTTAAGTATAAAGCTAGTGAGCAAGATAAGCAAAGTGTTTCTTTTTACAAGTTGTTTATGTTTGCTGATCGGTATGACATTTCATTAATGGTTGTCGGAAGTTTGAGTGCGATTGGAAATGGGCTATCGAATTGGGTGTCTCTAAAATTTTTATATTTGGCCATTGGTACCGGTCTTGCTGCATTTTTGCAGGTGTCTTGTTGGATGGTGACTGGGGAAAGACAAGCCACTCGAATTAGAGGCTTGTACTTGAAAACAATACTACGACAAGATATTGGATTTTTTGACACCCAAACTAACACCGGAGAGATCATTGGGAGAATATATGTCAGGGGACAACATTCTGGCATTCTCATTCAAGATGCCATGGGAGAAAAGGCAGCTAATTTGTTAAGATACTTCACAATCATGGCCACTGTTGTTTCAAAAATGTCAACACGCGGGCAACGTGCTTATGCGGAAGCTGGTAGTATAGTAGAACAGACTGTTGGAGCCATCAGAACAGTTGCATCTTTTACCGGAGAGAGGCAAGCGATAGAAAAATACAACCAAAACCTGAAAATTGCCTACAAAAACATGGTTCAACAAGGACTAGCCACAGGGATTGGACTTGGTACATTCATGCTTATTGTATTTAGCACTTATGGACTTGCCATATGGTACGGATCCAAAATTATCATTGATGTGAAAGGCTATAACGGGGGCCAAGTCATTAATGTTCTATTTGCAATGATGGCTGGTGGAATGTCACTAGGACAGACATCACCGTCTCTCAATGCATTTACAGCAGGGAAGGCTGCTGCATCCAAAATGCTTGAGACCATCAAGCGAATACCAACGATTGATCCCTATGATACTACTGGAGTTGTATTAGAAAATATTATAGGAGAGGTCGAACTTAAAGATGTGTACTTCAGGTATCCTGCTAGGCCAGATGTGCAGATCTTTGCTGGATTCTCATTACATGCATGTTCCAAATGGCACGACGACTGCTTTGGTTGGGCAGAGTGGAAGTGGGAAATCAACAGTGATAGGCCTGCATATGGGAAAGAAAATGCAACCGAAGAGGAGATTAGAAGAGCCACAGAGCTTGCAAATGCAGCAAAGTTCATTGATAAGCTGCCCCCGGTGAACCTAATTGTTTTGTACGGGCTAGACACAATGGTAGGTGAGCATGGAACATCATTATCGGGTGGACAAAAGCAAAGAATTGCAATTGCTAGAGCCAGTTTGAAAAACCCAAGAATTCTGCTTCTCGACGAAGCTACAAGTGCTCTAGATACCGAGTCTGAACGAATAGTTCAAGATGCACTTGTGAGATTAATGTCAAATAGGACAACTATTGTTGTTGCTCATCGCTTGACAACGATTAGAAATGCTGATGCAATAGCAGTGGTGCATAAAGGGAAATTGTTGAAAAAGGTAAGACGAAACCATATGTACTCTATCAATCTCAATCTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

497

Amino Acids

55.07

Weight (kDa)

9.37

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 52 - 151 7.2e-15 ABC transporter transmembrane region
SMC_N PF02463 138 - 477 1.4e-06 RecF/RecN/SMC N terminal domain
ABC_membrane PF00664 147 - 255 1.5e-16 ABC transporter transmembrane region
ABC_tran PF00005 387 - 433 9.7e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 208
AasI GACNNNNNNGTC 1 cut(s) 793
Acc36I ACCTGC 1 cut(s) 208
Acc65I GGTACC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 1 cut(s) 468
AciI CCGC 2 cut(s) 468, 485
AclWI GGATC 3 cut(s) 687, 700, 866
AcoI YGGCCR 2 cut(s) 186, 438
AcsI RAATTY 2 cut(s) 173, 1272
AcuI CTGAAG 1 cut(s) 925
AfaI GTAC 7 cut(s) 196, 275, 643, 689, 938, 1175, 1469
AfiI CCNNNNNNNGG 2 cut(s) 552, 1070
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 7 cut(s) 280, 386, 453, 611, 1261, 1331, 1444
AjnI CCWGG 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 6 cut(s) 41, 410, 491, 1117, 1147, 1292
AluI AGCT 6 cut(s) 41, 410, 491, 1117, 1147, 1292
Alw21I GWGCWC 1 cut(s) 1303
Alw26I GTCTC 3 cut(s) 171, 801, 839
AlwI GGATC 3 cut(s) 687, 700, 866
AoxI GGCC 5 cut(s) 186, 438, 730, 956, 1061
ApeKI GCWGC 6 cut(s) 206, 407, 824, 827, 1127, 1147
ApoI RAATTY 2 cut(s) 173, 1272
ArsI GACNNNNNNTTYG 4 cut(s) 149, 181, 1004, 1036
AseI ATTAAT 3 cut(s) 113, 741, 1349
AsiGI ACCGGT 1 cut(s) 197
Asp718I GGTACC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 730
AsuC2I CCSGG 1 cut(s) 1154
AsuHPI GGTGA 4 cut(s) 247, 783, 1168, 1208
BalI TGGCCA 2 cut(s) 188, 440
BamHI GGATCC 1 cut(s) 692
BanI GGYRCC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 1303
BbvI GCAGC 6 cut(s) 193, 419, 811, 814, 1134, 1139
BccI CCATC 4 cut(s) 226, 530, 754, 857
BciT130I CCWGG 1 cut(s) 9
BciVI GTATCC 1 cut(s) 957
BcnI CCSGG 1 cut(s) 1154
BcoDI GTCTC 3 cut(s) 171, 801, 839
BfaI CTAG 7 cut(s) 42, 620, 779, 954, 1181, 1248, 1304
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 1 cut(s) 957
BglII AGATCT 1 cut(s) 969
BisI GCNGC 6 cut(s) 207, 408, 825, 828, 1128, 1148
BlsI GCNGC 6 cut(s) 208, 409, 826, 829, 1129, 1149
Bme1390I CCNGG 2 cut(s) 9, 1154
BmgT120I GGNCC 1 cut(s) 730
BmiI GGNNCC 5 cut(s) 6, 196, 520, 694, 731
BmrFI CCNGG 2 cut(s) 9, 1154
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 5 cut(s) 379, 545, 839, 1324, 1399
BmuI ACTGGG 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 863
BpuMI CCSGG 1 cut(s) 1154
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 2 cut(s) 393, 1152
BsaWI WCCGGW 3 cut(s) 197, 329, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 552, 1070
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 244, 892, 1254
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 393, 1152
BseGI GGATG 2 cut(s) 237, 830
BseLI CCNNNNNNNGG 2 cut(s) 552, 1070
BseMI GCAATG 1 cut(s) 762
BseNI ACTGG 3 cut(s) 244, 892, 1254
BseRI GAGGAG 2 cut(s) 27, 1109
BseXI GCAGC 6 cut(s) 193, 419, 811, 814, 1134, 1139
BsgI GTGCAG 1 cut(s) 986
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 5 cut(s) 188, 440, 732, 958, 1063
BshNI GGYRCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 1303
BsiSI CCGG 4 cut(s) 198, 330, 546, 1154
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 552, 1070
BsmAI GTCTC 3 cut(s) 171, 801, 839
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 5 cut(s) 188, 440, 732, 958, 1063
Bso31I GGTCTC 1 cut(s) 839
Bsp1286I GDGCHC 1 cut(s) 1303
Bsp143I GATC 5 cut(s) 94, 336, 692, 871, 969
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 2 cut(s) 468, 485
BspANI GGCC 5 cut(s) 188, 440, 732, 958, 1063
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 5 cut(s) 6, 196, 520, 694, 731
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 3 cut(s) 687, 700, 866
BspQI GCTCTTC 1 cut(s) 1099
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 839
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 3 cut(s) 244, 892, 1254
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 393, 1152
BssMI GATC 5 cut(s) 94, 336, 692, 871, 969
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 5 cut(s) 445, 514, 532, 795, 1055
Bst6I CTCTTC 2 cut(s) 1086, 1099
BstC8I GCNNGC 4 cut(s) 470, 558, 1065, 1119
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 237, 830
BstFNI CGCG 1 cut(s) 468
BstKTI GATC 5 cut(s) 97, 339, 695, 874, 972
BstMAI GTCTC 3 cut(s) 171, 801, 839
BstMBI GATC 5 cut(s) 94, 336, 692, 871, 969
BstMWI GCNNNNNNNGC 7 cut(s) 55, 761, 812, 821, 964, 1127, 1298
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 2 cut(s) 995, 999
BstSCI CCNGG 2 cut(s) 7, 1152
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 6 cut(s) 193, 419, 811, 814, 1134, 1139
BstX2I RGATCY 2 cut(s) 692, 969
BstYI RGATCY 2 cut(s) 692, 969
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 5 cut(s) 188, 440, 732, 958, 1063
BtgI CCRYGG 1 cut(s) 393
BtgZI GCGATG 1 cut(s) 1367
BtsCI GGATG 2 cut(s) 237, 830
BtsI GCAGTG 1 cut(s) 1425
BtsIMutI CAGTG 3 cut(s) 441, 1060, 1425
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 4 cut(s) 470, 558, 1065, 1119
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 730
Csp6I GTAC 7 cut(s) 195, 274, 642, 688, 937, 1174, 1468
CspAI ACCGGT 1 cut(s) 197
CspCI CAANNNNNGTGG 6 cut(s) 613, 648, 1099, 1134, 1401, 1436
CviAII CATG 7 cut(s) 394, 436, 604, 649, 992, 996, 1202
CviQI GTAC 7 cut(s) 195, 274, 642, 688, 937, 1174, 1468
DpnI GATC 5 cut(s) 96, 338, 694, 873, 971
DpnII GATC 5 cut(s) 94, 336, 692, 871, 969
DrdI GACNNNNNNGTC 1 cut(s) 793
DseDI GACNNNNNNGTC 1 cut(s) 793
EaeI YGGCCR 2 cut(s) 186, 438
Eam1104I CTCTTC 2 cut(s) 1086, 1099
EarI CTCTTC 2 cut(s) 1086, 1099
Eco130I CCWWGG 1 cut(s) 393
Eco147I AGGCCT 1 cut(s) 1063
Eco31I GGTCTC 1 cut(s) 839
Eco57I CTGAAG 1 cut(s) 925
EcoRI GAATTC 1 cut(s) 1272
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 393
EcoT22I ATGCAT 2 cut(s) 808, 997
ErhI CCWWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 7 cut(s) 397, 439, 607, 652, 995, 999, 1205
FalI AAGNNNNNCTT 4 cut(s) 52, 84, 1323, 1355
FaqI GGGAC 1 cut(s) 375
FatI CATG 7 cut(s) 393, 435, 603, 648, 991, 995, 1201
FauI CCCGC 1 cut(s) 461
FauNDI CATATG 3 cut(s) 683, 1069, 1464
Fnu4HI GCNGC 6 cut(s) 207, 408, 825, 828, 1128, 1148
FokI GGATG 2 cut(s) 244, 817
Fsp4HI GCNGC 6 cut(s) 207, 408, 825, 828, 1128, 1148
FspBI CTAG 7 cut(s) 42, 620, 779, 954, 1181, 1248, 1304
GluI GCNGC 6 cut(s) 207, 408, 825, 828, 1128, 1148
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 5 cut(s) 188, 440, 732, 958, 1063
HapII CCGG 4 cut(s) 198, 330, 546, 1154
Hin1II CATG 7 cut(s) 397, 439, 607, 652, 995, 999, 1205
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 2 cut(s) 981, 1313
HpaII CCGG 4 cut(s) 198, 330, 546, 1154
HphI GGTGA 4 cut(s) 247, 783, 1168, 1208
Hpy166II GTNNAC 4 cut(s) 462, 937, 1159, 1223
Hpy188I TCNGA 3 cut(s) 125, 527, 1318
Hpy188III TCNNGA 4 cut(s) 386, 1283, 1304, 1331
Hpy8I GTNNAC 4 cut(s) 462, 937, 1159, 1223
Hpy99I CGWCG 2 cut(s) 1016, 1289
HpyAV CCTTC 1 cut(s) 814
HpyCH4III ACNGT 5 cut(s) 445, 514, 532, 795, 1055
HpyCH4IV ACGT 1 cut(s) 475
HpyF10VI GCNNNNNNNGC 7 cut(s) 55, 761, 812, 821, 964, 1127, 1298
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 7 cut(s) 397, 439, 607, 652, 995, 999, 1205
KpnI GGTACC 1 cut(s) 198
Kzo9I GATC 5 cut(s) 94, 336, 692, 871, 969
LguI GCTCTTC 1 cut(s) 1099
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 6 cut(s) 193, 419, 811, 814, 1134, 1139
LweI GCATC 5 cut(s) 379, 545, 839, 1324, 1399
MaeI CTAG 7 cut(s) 42, 620, 779, 954, 1181, 1248, 1304
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 235, 774
MalI GATC 5 cut(s) 96, 338, 694, 873, 971
MboI GATC 5 cut(s) 94, 336, 692, 871, 969
MboII GAAGA 2 cut(s) 1103, 1116
MfeI CAATTG 1 cut(s) 1242
MflI RGATCY 2 cut(s) 692, 969
MhlI GDGCHC 1 cut(s) 1303
MlsI TGGCCA 2 cut(s) 188, 440
MluNI TGGCCA 2 cut(s) 188, 440
MlyI GAGTC 1 cut(s) 1322
MmeI TCCRAC 3 cut(s) 103, 209, 496
MnlI CCTC 6 cut(s) 5, 12, 260, 546, 910, 1087
Mox20I TGGCCA 2 cut(s) 188, 440
Mph1103I ATGCAT 2 cut(s) 808, 997
MscI TGGCCA 2 cut(s) 188, 440
MseI TTAA 6 cut(s) 30, 113, 419, 741, 927, 1349
MslI CAYNNNNRTG 2 cut(s) 434, 710
Msp20I TGGCCA 2 cut(s) 188, 440
MspI CCGG 4 cut(s) 198, 330, 546, 1154
MspR9I CCNGG 2 cut(s) 9, 1154
MunI CAATTG 1 cut(s) 1242
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 1 cut(s) 9
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 7 cut(s) 55, 761, 812, 821, 964, 1127, 1298
NciI CCSGG 1 cut(s) 1154
NcoI CCATGG 1 cut(s) 393
NdeI CATATG 3 cut(s) 683, 1069, 1464
NdeII GATC 5 cut(s) 94, 336, 692, 871, 969
NlaIII CATG 7 cut(s) 397, 439, 607, 652, 995, 999, 1205
NlaIV GGNNCC 5 cut(s) 6, 196, 520, 694, 731
NmuCI GTSAC 2 cut(s) 235, 774
NsiI ATGCAT 2 cut(s) 808, 997
NspI RCATGY 2 cut(s) 995, 999
PaqCI CACCTGC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 1063
PciSI GCTCTTC 1 cut(s) 1099
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PctI GAATGC 1 cut(s) 375
PfeI GAWTC 1 cut(s) 981
PinAI ACCGGT 1 cut(s) 197
PkrI GCNGC 6 cut(s) 208, 409, 826, 829, 1129, 1149
PleI GAGTC 1 cut(s) 1321
PpsI GAGTC 1 cut(s) 1321
PshBI ATTAAT 3 cut(s) 113, 741, 1349
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 5 cut(s) 6, 196, 520, 694, 731
PspPI GGNCC 1 cut(s) 730
PsuI RGATCY 2 cut(s) 692, 969
RsaI GTAC 7 cut(s) 196, 275, 643, 689, 938, 1175, 1469
RsaNI GTAC 7 cut(s) 195, 274, 642, 688, 937, 1174, 1468
RseI CAYNNNNRTG 2 cut(s) 434, 710
SapI GCTCTTC 1 cut(s) 1099
SaqAI TTAA 6 cut(s) 30, 113, 419, 741, 927, 1349
SatI GCNGC 6 cut(s) 207, 408, 825, 828, 1128, 1148
Sau3AI GATC 5 cut(s) 94, 336, 692, 871, 969
Sau96I GGNCC 1 cut(s) 730
SchI GAGTC 1 cut(s) 1322
ScrFI CCNGG 2 cut(s) 9, 1154
SduI GDGCHC 1 cut(s) 1303
SfaNI GCATC 5 cut(s) 379, 545, 839, 1324, 1399
SmiMI CAYNNNNRTG 2 cut(s) 434, 710
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
SseBI AGGCCT 1 cut(s) 1063
SsiI CCGC 2 cut(s) 468, 485
SspI AATATT 1 cut(s) 907
SspMI CTAG 7 cut(s) 42, 620, 779, 954, 1181, 1248, 1304
StuI AGGCCT 1 cut(s) 1063
StyD4I CCNGG 2 cut(s) 7, 1152
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 5 cut(s) 445, 514, 532, 795, 1055
TaiI ACGT 1 cut(s) 478
TaqI TCGA 4 cut(s) 155, 259, 921, 1284
TatI WGTACW 3 cut(s) 273, 936, 1467
TfiI GAWTC 1 cut(s) 981
Tru1I TTAA 6 cut(s) 30, 113, 419, 741, 927, 1349
Tru9I TTAA 6 cut(s) 30, 113, 419, 741, 927, 1349
TscAI CASTG 3 cut(s) 448, 1060, 1425
TseFI GTSAC 2 cut(s) 235, 774
TseI GCWGC 6 cut(s) 206, 407, 824, 827, 1127, 1147
Tsp45I GTSAC 2 cut(s) 235, 774
TspDTI ATGAA 3 cut(s) 99, 637, 1126
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 3 cut(s) 448, 1060, 1425
VspI ATTAAT 3 cut(s) 113, 741, 1349
XapI RAATTY 2 cut(s) 173, 1272
XbaI TCTAGA 1 cut(s) 1303
XceI RCATGY 2 cut(s) 995, 999
XspI CTAG 7 cut(s) 42, 620, 779, 954, 1181, 1248, 1304
Zsp2I ATGCAT 2 cut(s) 808, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.