Rh3AG225500

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001944
Physical Location & Seq
Reverse (-)
23224861 .. 23225802
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG225500.1

Sequence Viewer

Length: 645 bp
ATGGGTCCTGACTCCAACAAAGCAAAGGACTCAGCAGCTTCGATATTTAAGATTCTTGACAGCAAGCCTATGATTGATTCGAGCAGCGATACAGGCACTACATTATCGAGCATAACCGGAGAAATTGATCTCGAGCATGTTAGCTTCAAATATCCCACAAGGCCAGATGTGCAGATATTTAAAGACATTTGTTTGAAAATACCCTCCGGAAAGCGTGGAGATGTAACTAAAGAAGAGATCATTGCTGCCACAAAAGCATCAAATGCACACACCTTCATATCTTTACTAACTCATGGCTATGACACCTCTGTCGGGGAACGAGGGGTTCAACTATCTGGAGGGCAGAAGCAAAGAATAGTCATTGCAAGGGCTATTCTAAAAGACCCGAAAATCCTCTTGCTCGATGAAGCTACAAGTGCACTAGATGCAGAATCAGAACGCATAGTACAAGATGCTTTGGACAGTGTTATGCTGAATAGAACAACTGTGGTCGTTGCTCACCGCCTTACCACGATTAAAGGGGCAGACATAATTGCTGTGGTGAAGAACGGCGTGATTGCTGAGAAGGGTAGCCATGATTCTCTAATGAATATCACTGAAGGTGCTTATGCATCTTTGGTGGCACTTCATTCCAACTCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

214

Amino Acids

22.84

Weight (kDa)

6.07

Isoelectric Point (pI)

22.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 84 - 139 1.2e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 3 cut(s) 148, 196, 329
AluBI AGCT 3 cut(s) 38, 144, 410
AluI AGCT 3 cut(s) 38, 144, 410
Alw21I GWGCWC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 417
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 1 cut(s) 161
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 3 cut(s) 35, 84, 245
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 2 cut(s) 491, 553
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 47, 96, 232
BceAI ACGGC 1 cut(s) 565
BfaI CTAG 1 cut(s) 422
BisI GCNGC 3 cut(s) 36, 85, 246
BlsI GCNGC 3 cut(s) 37, 86, 247
Bme18I GGWCC 1 cut(s) 5
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 4 cut(s) 266, 415, 442, 620
BpmI CTGGAG 1 cut(s) 357
BsaWI WCCGGW 2 cut(s) 116, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse3DI GCAATG 2 cut(s) 240, 360
BseAI TCCGGA 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 2 cut(s) 240, 360
BseMII CTCAG 2 cut(s) 45, 552
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 3 cut(s) 47, 96, 232
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 2 cut(s) 117, 207
BslI CCNNNNNNNGG 1 cut(s) 312
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 2 cut(s) 127, 237
BspACI CCGC 1 cut(s) 502
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 44, 553
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 2 cut(s) 240, 360
BssMI GATC 2 cut(s) 127, 237
Bst4CI ACNGT 2 cut(s) 464, 487
Bst6I CTCTTC 1 cut(s) 228
BstAPI GCANNNNNTGC 2 cut(s) 263, 425
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 31, 561
BstKTI GATC 2 cut(s) 130, 240
BstMBI GATC 2 cut(s) 127, 237
BstMWI GCNNNNNNNGC 6 cut(s) 93, 169, 254, 263, 416, 425
BstNSI RCATGY 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 3 cut(s) 47, 96, 232
BsuRI GGCC 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 469, 594
Cac8I GCNNGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 446
CviAII CATG 4 cut(s) 137, 293, 575, 642
CviJI RGCY 8 cut(s) 38, 67, 144, 163, 297, 371, 410, 573
CviKI_1 RGCY 8 cut(s) 38, 67, 144, 163, 297, 371, 410, 573
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 2 cut(s) 31, 561
DpnI GATC 2 cut(s) 129, 239
DpnII GATC 2 cut(s) 127, 237
DraI TTTAAA 1 cut(s) 181
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 5
EcoT22I ATGCAT 1 cut(s) 613
FaeI CATG 4 cut(s) 140, 296, 578, 645
FatI CATG 4 cut(s) 136, 292, 574, 641
Fnu4HI GCNGC 3 cut(s) 36, 85, 246
Fsp4HI GCNGC 3 cut(s) 36, 85, 246
FspBI CTAG 1 cut(s) 422
GluI GCNGC 3 cut(s) 36, 85, 246
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 117, 207
Hin1II CATG 4 cut(s) 140, 296, 578, 645
HinfI GANTC 6 cut(s) 11, 29, 52, 77, 431, 578
HpaII CCGG 2 cut(s) 117, 207
HphI GGTGA 2 cut(s) 491, 553
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 436
Hpy188III TCNNGA 5 cut(s) 8, 56, 131, 207, 336
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 283, 559, 593
HpyCH4III ACNGT 2 cut(s) 464, 487
HpyCH4V TGCA 6 cut(s) 172, 266, 365, 419, 428, 611
HpyF10VI GCNNNNNNNGC 6 cut(s) 93, 169, 254, 263, 416, 425
HpyF3I CTNAG 2 cut(s) 31, 561
Hsp92II CATG 4 cut(s) 140, 296, 578, 645
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 2 cut(s) 127, 237
LpnPI CCDG 6 cut(s) 21, 78, 130, 177, 220, 321
Lsp1109I GCAGC 3 cut(s) 47, 96, 232
LweI GCATC 4 cut(s) 266, 415, 442, 620
MaeI CTAG 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 129, 239
MboI GATC 2 cut(s) 127, 237
MboII GAAGA 2 cut(s) 245, 556
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 2 cut(s) 123, 531
MlyI GAGTC 2 cut(s) 5, 23
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 5 cut(s) 214, 314, 316, 332, 404
Mph1103I ATGCAT 1 cut(s) 613
MroI TCCGGA 1 cut(s) 206
MseI TTAA 3 cut(s) 48, 180, 516
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 2 cut(s) 117, 207
MwoI GCNNNNNNNGC 6 cut(s) 93, 169, 254, 263, 416, 425
NdeII GATC 2 cut(s) 127, 237
NlaIII CATG 4 cut(s) 140, 296, 578, 645
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 131
PfeI GAWTC 4 cut(s) 52, 77, 431, 578
PkrI GCNGC 3 cut(s) 37, 86, 247
PleI GAGTC 2 cut(s) 5, 23
PpsI GAGTC 2 cut(s) 5, 23
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsrI GAACNNNNNNTAC 2 cut(s) 429, 461
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 3 cut(s) 48, 180, 516
SatI GCNGC 3 cut(s) 36, 85, 246
Sau3AI GATC 2 cut(s) 127, 237
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 2 cut(s) 5, 23
SduI GDGCHC 1 cut(s) 421
SetI ASST 6 cut(s) 40, 146, 275, 308, 412, 604
SfaNI GCATC 4 cut(s) 266, 415, 442, 620
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 123, 531
SsiI CCGC 1 cut(s) 502
SspMI CTAG 1 cut(s) 422
TaaI ACNGT 2 cut(s) 464, 487
TaqI TCGA 5 cut(s) 41, 80, 107, 132, 402
TasI AATT 2 cut(s) 123, 531
TatI WGTACW 1 cut(s) 445
TfiI GAWTC 4 cut(s) 52, 77, 431, 578
Tru1I TTAA 3 cut(s) 48, 180, 516
Tru9I TTAA 3 cut(s) 48, 180, 516
TscAI CASTG 2 cut(s) 469, 601
TseI GCWGC 3 cut(s) 35, 84, 245
TspDTI ATGAA 4 cut(s) 265, 420, 602, 617
TspRI CASTG 2 cut(s) 469, 601
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 5
XceI RCATGY 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.