Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001944

Physical Location & Seq

Genomic Coordinates Forward (+)

240665 .. 244299

Gene Structure 3635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0003400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGATCGTTTCTCAGGAGGCGATCAAGCAATTCCAAGCTTTAATGGATCAAGTTGATGAACCACTGAAGAGAACATTTCAGAATGTTCACCAAGGATTTCTAGTTGAGACTTTTGCGCGTTTTCTCAGAGCAAGAGAGTGGAATGTTGTCAAAGCCCATAAAATGTTGATGGATTGTTTAAACTGGAGGGTACAAAATGAGATTGACAGTATATTGGCCAAACCCATAATTCCAACTGAATTGTACAGAGGAGTGCGAGACTCACAGCTCATAGGCCTTTCAGGTTACTCTAGAGAGGGTATGCCAGTCTTTGCTATTGGGGTTGGGTTAAGTACATTTAATAAAGCGTCTGTTCATTACTATGTGCAGTCACACATTCAAATCAATGAATATCGAGATCGTGTTATTTTGCCATCTGCATCGAAGAAGTATGGTAAGCCTATTACCACATGTGTGAAGGTTTTAGATATGACTGGGTTGAAGCTTTCAGCACTAAACCAAATTAAGTTGTTGACAATTATATCAACAGTTGATGATTTGAACTACCCAGAGAAGACAAATACGTACTACATTGTAAATGTGCCTTACATATTCTCAGCCTGTTGGAAGGTTGTCAAACCCCTTTTGCAGGAGAGGACAAGAAAAAAAGTACAAGTATTGTCTGGTTGTGGTACAGATGAGTTGTTGAAGATAATGGATTATGCATCTCTTCCCCATTTCTGTAAAAGGGAAGGTTCTGGATCATCTCGGCATTCACAGAATGGAACTGACAATTGCTTCTCCTTGGATCACCATTTTCATCAACAGCTCTACAACTACATCAAGCAGCAATCTTTGATCAATGAATCCGTTCAACCAATCAAGCAGGGTTCTTTTCATGTGGACATACCTGAGCCAGCTGCAGAAGGAACACAGATTGCCAAAACAATAGAATCTGAGTTCAACAAGTTTGGTAACGGCAATGGGGTATCTGACTCTCCCCTCAAAATCAATGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

334

Amino Acids

37.8

Weight (kDa)

8.74

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	8 - 59	1.4e-10	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	89 - 241	2.8e-18	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46540
fragaria_vesca	FvH4_3g06540 FvH4_6g19120 FvH4_6g19362 FvH4_7g10050
malus_domestica	MD05G1292400.v1.1 MD10G1268300.v1.1 MD10G1268400.v1.1
prunus_persica	Prupe.4G073000_v2.0.a1
pyrus_communis	pycom05g26870 pycom10g22450 pycom10g22470
rosa_chinensis	RchiOBHm_Chr3g0474221 RchiOBHm_Chr3g0474231 RchiOBHm_Chr3g0479341 RchiOBHm_Chr3g0479351 RchiOBHm_Chr5g0012641
rosa_laevigata	RLG00000023583 RLG00000023903 RLG00000023940 RLG00000031931 RLG00000031945
rosa_multiflora	Rmu_sc0015051.1_g000005 Rmu_sc0024687.1_g000002 Rmu_sc0034046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063960 Rroxscaffold_6G00402390 Rroxscaffold_6G00407420
rosa_rugosa	Rorug01G0315600 Rorug02G0062500 Rorug03G0139600 Rorug05G0003300 Rorug05G0003400 Rorug05G0313000
rosa_samantha	Rh3AG190100 Rh3AG225500 Rh3AG225700 Rh3BG219300 Rh4DG026100 Rh5AG097000 Rh5BG093600 Rh5CG106000 Rh5DG092700
rosa_wichuraiana	Rw3G017340 Rw5G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	121
AclWI	GGATC	4 cut(s)	14, 57, 751, 798
AcoI	YGGCCR	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	6 cut(s)	195, 248, 337, 569, 654, 676
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	6 cut(s)	383, 484, 544, 691, 857, 946
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	5 cut(s)	41, 271, 487, 811, 902
AluI	AGCT	5 cut(s)	41, 271, 487, 811, 902
Alw26I	GTCTC	2 cut(s)	104, 255
AlwI	GGATC	4 cut(s)	14, 57, 751, 798
AoxI	GGCC	2 cut(s)	219, 277
ApeKI	GCWGC	2 cut(s)	829, 902
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	83, 785
BalI	TGGCCA	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	841, 889
BccI	CCATC	2 cut(s)	166, 424
BceAI	ACGGC	1 cut(s)	976
BclI	TGATCA	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	104, 255
BfaI	CTAG	2 cut(s)	104, 294
BfmI	CTRYAG	1 cut(s)	903
BisI	GCNGC	2 cut(s)	830, 903
BlsI	GCNGC	2 cut(s)	831, 904
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	431, 716
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	894
BsaAI	YACGTR	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	94, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	3 cut(s)	191, 308, 481
Bse3DI	GCAATG	1 cut(s)	970
BseDI	CCNNGG	2 cut(s)	94, 786
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMI	GCAATG	1 cut(s)	970
BseMII	CTCAG	5 cut(s)	29, 142, 612, 885, 930
BseNI	ACTGG	3 cut(s)	191, 308, 481
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	841, 889
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	221, 279
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	104, 255
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	2 cut(s)	221, 279
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
BspANI	GGCC	2 cut(s)	221, 279
BspCNI	CTCAG	5 cut(s)	28, 141, 611, 886, 931
BspFNI	CGCG	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	4 cut(s)	14, 57, 751, 798
BsrDI	GCAATG	1 cut(s)	970
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	3 cut(s)	191, 308, 481
BssECI	CCNNGG	2 cut(s)	94, 786
BssMI	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
BssT1I	CCWWGG	2 cut(s)	94, 786
Bst4CI	ACNGT	2 cut(s)	212, 532
Bst6I	CTCTTC	2 cut(s)	65, 717
BstAUI	TGTACA	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	5 cut(s)	15, 128, 598, 894, 939
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	7 cut(s)	9, 27, 52, 403, 746, 793, 843
BstMAI	GTCTC	2 cut(s)	104, 255
BstMBI	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
BstNSI	RCATGY	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	903
BstSNI	TACGTA	1 cut(s)	567
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	841, 889
BstV2I	GAAGAC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	221, 279
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	900
CfoI	GCGC	1 cut(s)	121
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	6 cut(s)	194, 247, 336, 568, 653, 675
CviAII	CATG	2 cut(s)	453, 881
CviQI	GTAC	6 cut(s)	194, 247, 336, 568, 653, 675
DdeI	CTNAG	5 cut(s)	15, 128, 598, 894, 939
DpnI	GATC	7 cut(s)	8, 26, 51, 402, 745, 792, 842
DpnII	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	65, 717
EarI	CTCTTC	2 cut(s)	65, 717
Eco105I	TACGTA	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	94, 786
Eco147I	AGGCCT	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoT14I	CCWWGG	2 cut(s)	94, 786
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	2 cut(s)	94, 786
FaeI	CATG	2 cut(s)	456, 884
FatI	CATG	2 cut(s)	452, 880
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	2 cut(s)	830, 903
Fsp4HI	GCNGC	2 cut(s)	830, 903
FspBI	CTAG	2 cut(s)	104, 294
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	830, 903
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	221, 279
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	456, 884
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	2 cut(s)	39, 485
HinfI	GANTC	4 cut(s)	263, 848, 935, 977
HphI	GGTGA	2 cut(s)	83, 785
Hpy166II	GTNNAC	3 cut(s)	91, 516, 886
Hpy188I	TCNGA	4 cut(s)	84, 131, 940, 976
Hpy188III	TCNNGA	4 cut(s)	17, 294, 398, 741
Hpy8I	GTNNAC	3 cut(s)	91, 516, 886
HpyAV	CCTTC	4 cut(s)	454, 604, 728, 902
HpyCH4III	ACNGT	2 cut(s)	212, 532
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	5 cut(s)	370, 422, 631, 707, 905
HpyF3I	CTNAG	5 cut(s)	15, 128, 598, 894, 939
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	2 cut(s)	456, 884
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
Lsp1109I	GCAGC	2 cut(s)	841, 889
LweI	GCATC	2 cut(s)	431, 716
MaeI	CTAG	2 cut(s)	104, 294
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	4 cut(s)	287, 372, 956, 998
MalI	GATC	7 cut(s)	8, 26, 51, 402, 745, 792, 842
MboI	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
MboII	GAAGA	5 cut(s)	82, 439, 568, 703, 704
MfeI	CAATTG	1 cut(s)	775
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	6 cut(s)	32, 231, 242, 504, 519, 775
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	257, 971
MmeI	TCCRAC	2 cut(s)	260, 587
MnlI	CCTC	6 cut(s)	13, 183, 245, 292, 630, 995
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	5 cut(s)	44, 182, 332, 342, 507
MslI	CAYNNNNRTG	2 cut(s)	363, 455
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	902
MssI	GTTTAAAC	1 cut(s)	183
MunI	CAATTG	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	754
MvnI	CGCG	1 cut(s)	121
NdeII	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
NlaIII	CATG	2 cut(s)	456, 884
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	2 cut(s)	372, 998
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	456
OliI	CACNNNNGTG	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	279
PciI	ACATGT	1 cut(s)	452
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	848, 935
PkrI	GCNGC	2 cut(s)	831, 904
PleI	GAGTC	2 cut(s)	257, 971
PmeI	GTTTAAAC	1 cut(s)	183
PpsI	GAGTC	2 cut(s)	257, 971
Ppu21I	YACGTR	1 cut(s)	567
PscI	ACATGT	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	907
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	6 cut(s)	195, 248, 337, 569, 654, 676
RsaNI	GTAC	6 cut(s)	194, 247, 336, 568, 653, 675
RseI	CAYNNNNRTG	2 cut(s)	363, 455
SaqAI	TTAA	5 cut(s)	44, 182, 332, 342, 507
SatI	GCNGC	2 cut(s)	830, 903
Sau3AI	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
SchI	GAGTC	2 cut(s)	257, 971
SfaNI	GCATC	2 cut(s)	431, 716
SfcI	CTRYAG	1 cut(s)	903
SmiMI	CAYNNNNRTG	2 cut(s)	363, 455
SnaBI	TACGTA	1 cut(s)	567
Sse9I	AATT	6 cut(s)	32, 231, 242, 504, 519, 775
SseBI	AGGCCT	1 cut(s)	279
SspMI	CTAG	2 cut(s)	104, 294
StuI	AGGCCT	1 cut(s)	279
StyI	CCWWGG	2 cut(s)	94, 786
TaaI	ACNGT	2 cut(s)	212, 532
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	2 cut(s)	397, 425
TasI	AATT	6 cut(s)	32, 231, 242, 504, 519, 775
TatI	WGTACW	3 cut(s)	246, 335, 652
TfiI	GAWTC	2 cut(s)	848, 935
Tru1I	TTAA	5 cut(s)	44, 182, 332, 342, 507
Tru9I	TTAA	5 cut(s)	44, 182, 332, 342, 507
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	372, 998
TseI	GCWGC	2 cut(s)	829, 902
Tsp45I	GTSAC	2 cut(s)	372, 998
TspDTI	ATGAA	6 cut(s)	75, 347, 405, 791, 861, 869
TspGWI	ACGGA	1 cut(s)	841
TspRI	CASTG	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	629
XbaI	TCTAGA	1 cut(s)	293
XceI	RCATGY	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	2 cut(s)	104, 294
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.