Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001944

Physical Location & Seq

Genomic Coordinates Reverse (-)

205477 .. 208410

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTCAGTGTGGTTGACGACGAAGGAGACCGGGGCGGCCTTGCCCTTGCACTCAGAAATAGATCATGATGAAATTCATCGGACGAGGAGCACTACTGGCCATGAAGGAAGTGAATACCGTCAGCCGCAGCAACAGTACCACCGTGATGAAGATGAGTACCAGCTGCAAGGCCAGTTTCAGCACGAGTGCAATATCTCAAGGAATAGTGTATGGGAGATAGAAGAGGAAGAAGAAGAAGATGATCATGAGGGTTTGAATTATTCAATTGGAGGATCAAATACTAGTATCCCAATTGAGATCAAAGAGCTTTTCGGGGCGAAGCGCTACTTTCCCATGCCTTCCATCAAGGAAGAACAATATGATCATATTAATGGTCTGCCTCATTCTTCTTCATCGTCTGACATTGTTGACTGCGTTTATGTGGCCGTCGGAAAGAGCGAGTCAAGCATGGACGCCTTAAACTACGCCGTCAAGCAGCTGCTGCTGTCATCCAACACTATCCTCTATCTCATTCACATTTTCCCAGAGATCAAGTACATCCCAAGTCCATTAGGAAAACTTCCAAAAAGTCAAGTGAGCCCAGAACAAGTGGAAAGTTTCATGGCTCAAGAATCAGACAAGAGAAGACAACTCCTTCAGAAGTATATTGATAAATGCTCGGCTGCAAAGGTTAAGATGGATACTCTGCTGATTGAAAGTGATATGATCGCCAAGGCTATTGTGGACCTTATCCCTATTCTCAACATAAGAAAACTGGTGCTTGGAACGAACAAATCTAATTTGAGGAAATTGATGTCCGGGAAAGGAGCAAGGGGAATAGCTGATCAAGTCCTTCAAAGTGCACCCCAAGGTTGTGAGATTAATATCATTTGTGAAGGAAATCAAGTGATGATTAATGACTCGCTTTCCCCACATGGCATTGCCAATGATCACATTGCACCAAATACACTTTCCCCTAGAGGAGGAGGCAATGATGATAACCCTAACTCTATCCTAGACCGCGATCAGAGGAATGAAGCCTGTTCATTCCTGTGTTTTAAACCGATGTTCTCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

352

Amino Acids

39.49

Weight (kDa)

5.14

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46540
fragaria_vesca	FvH4_3g06540 FvH4_6g19120 FvH4_6g19362 FvH4_7g10050
malus_domestica	MD05G1292400.v1.1 MD10G1268300.v1.1 MD10G1268400.v1.1
prunus_persica	Prupe.4G073000_v2.0.a1
pyrus_communis	pycom05g26870 pycom10g22450 pycom10g22470
rosa_chinensis	RchiOBHm_Chr3g0474221 RchiOBHm_Chr3g0474231 RchiOBHm_Chr3g0479341 RchiOBHm_Chr3g0479351 RchiOBHm_Chr5g0012641
rosa_laevigata	RLG00000023583 RLG00000023903 RLG00000023940 RLG00000031931 RLG00000031945
rosa_multiflora	Rmu_sc0015051.1_g000005 Rmu_sc0024687.1_g000002 Rmu_sc0034046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063960 Rroxscaffold_6G00402390 Rroxscaffold_6G00407420
rosa_rugosa	Rorug01G0315600 Rorug02G0062500 Rorug03G0139600 Rorug05G0003300 Rorug05G0003400 Rorug05G0313000
rosa_samantha	Rh3AG190100 Rh3AG225500 Rh3AG225700 Rh3BG219300 Rh4DG026100 Rh5AG097000 Rh5BG093600 Rh5CG106000 Rh5DG092700
rosa_wichuraiana	Rw3G017340 Rw5G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1002
AciI	CCGC	3 cut(s)	35, 125, 1000
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	2 cut(s)	97, 423
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	3 cut(s)	137, 158, 536
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	962
AgsI	TTSAA	4 cut(s)	256, 264, 695, 836
AhlI	ACTAGT	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	2 cut(s)	934, 966
AluBI	AGCT	4 cut(s)	163, 307, 478, 821
AluI	AGCT	4 cut(s)	163, 307, 478, 821
Alw21I	GWGCWC	2 cut(s)	92, 844
Alw26I	GTCTC	1 cut(s)	20
Alw44I	GTGCAC	1 cut(s)	840
AlwI	GGATC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	481
Aor51HI	AGCGCT	1 cut(s)	323
AoxI	GGCC	4 cut(s)	36, 97, 169, 423
ApaLI	GTGCAC	1 cut(s)	840
ApeKI	GCWGC	6 cut(s)	127, 163, 475, 478, 481, 662
ApoI	RAATTY	1 cut(s)	72
AseI	ATTAAT	3 cut(s)	369, 861, 894
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	724
AsuC2I	CCSGG	2 cut(s)	31, 799
AvaII	GGWCC	1 cut(s)	724
BaeGI	GKGCMC	1 cut(s)	844
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	581
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	631
Bbv12I	GWGCWC	2 cut(s)	92, 844
BbvI	GCAGC	6 cut(s)	139, 150, 465, 468, 487, 649
BccI	CCATC	2 cut(s)	350, 670
BceAI	ACGGC	2 cut(s)	410, 452
BciVI	GTATCC	2 cut(s)	296, 673
BclI	TGATCA	4 cut(s)	241, 361, 823, 928
BcnI	CCSGG	2 cut(s)	31, 799
BcoDI	GTCTC	1 cut(s)	20
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	3 cut(s)	282, 957, 995
BfoI	RGCGCY	1 cut(s)	325
BfuI	GTATCC	2 cut(s)	296, 673
BisI	GCNGC	8 cut(s)	36, 125, 128, 164, 476, 479, 482, 663
BlsI	GCNGC	8 cut(s)	37, 126, 129, 165, 477, 480, 483, 664
Bme1390I	CCNGG	2 cut(s)	31, 799
Bme18I	GGWCC	1 cut(s)	724
BmgT120I	GGNCC	1 cut(s)	724
BmrFI	CCNGG	2 cut(s)	31, 799
BpiI	GAAGAC	1 cut(s)	631
BpuEI	CTTGAG	2 cut(s)	181, 591
BpuMI	CCSGG	2 cut(s)	31, 799
BsaBI	GATNNNNATC	1 cut(s)	863
BsaHI	GRCGYC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	30, 711, 847
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
Bse1I	ACTGG	3 cut(s)	100, 172, 759
Bse3DI	GCAATG	3 cut(s)	918, 933, 976
Bse8I	GATNNNNATC	1 cut(s)	863
BseDI	CCNNGG	3 cut(s)	30, 711, 847
BseGI	GGATG	2 cut(s)	488, 537
BseJI	GATNNNNATC	1 cut(s)	863
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMI	GCAATG	3 cut(s)	918, 933, 976
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	3 cut(s)	100, 172, 759
BseRI	GAGGAG	3 cut(s)	100, 975, 978
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	6 cut(s)	139, 150, 465, 468, 487, 649
Bsh1236I	CGCG	1 cut(s)	1002
BshFI	GGCC	4 cut(s)	38, 99, 171, 425
BsiHKAI	GWGCWC	2 cut(s)	92, 844
BsiSI	CCGG	2 cut(s)	30, 798
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmAI	GTCTC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	38, 99, 171, 425
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	3 cut(s)	92, 581, 844
BspACI	CCGC	3 cut(s)	35, 125, 1000
BspANI	GGCC	4 cut(s)	38, 99, 171, 425
BspCNI	CTCAG	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	1002
BspHI	TCATGA	2 cut(s)	64, 244
BspPI	GGATC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	3 cut(s)	918, 933, 976
BsrI	ACTGG	3 cut(s)	100, 172, 759
BssECI	CCNNGG	3 cut(s)	30, 711, 847
BssNI	GRCGYC	1 cut(s)	453
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	2 cut(s)	711, 847
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	119, 135, 143
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	52
BstENI	CCTNNNNNAGG	1 cut(s)	960
BstF5I	GGATG	2 cut(s)	488, 537
BstFNI	CGCG	1 cut(s)	1002
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 444, 481
BstSCI	CCNGG	2 cut(s)	29, 797
BstSLI	GKGCMC	1 cut(s)	844
BstUI	CGCG	1 cut(s)	1002
BstV1I	GCAGC	6 cut(s)	139, 150, 465, 468, 487, 649
BstV2I	GAAGAC	1 cut(s)	631
BsuI	GTATCC	2 cut(s)	296, 673
BsuRI	GGCC	4 cut(s)	38, 99, 171, 425
BtsCI	GGATG	2 cut(s)	488, 537
BtsIMutI	CAGTG	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	481
CciI	TCATGA	2 cut(s)	64, 244
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	724
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	136, 157, 535
CviAII	CATG	7 cut(s)	65, 101, 245, 334, 448, 601, 914
CviQI	GTAC	3 cut(s)	136, 157, 535
DdeI	CTNAG	1 cut(s)	52
DraI	TTTAAA	1 cut(s)	1039
EaeI	YGGCCR	2 cut(s)	97, 423
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	711, 847
Eco24I	GRGCYC	1 cut(s)	581
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	724
Eco47III	AGCGCT	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	960
EcoT14I	CCWWGG	2 cut(s)	711, 847
EcoT38I	GRGCYC	1 cut(s)	581
ErhI	CCWWGG	2 cut(s)	711, 847
FaeI	CATG	7 cut(s)	68, 104, 248, 337, 451, 604, 917
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	7 cut(s)	64, 100, 244, 333, 447, 600, 913
FbaI	TGATCA	4 cut(s)	241, 361, 823, 928
Fnu4HI	GCNGC	8 cut(s)	36, 125, 128, 164, 476, 479, 482, 663
FokI	GGATG	2 cut(s)	475, 524
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	8 cut(s)	36, 125, 128, 164, 476, 479, 482, 663
FspBI	CTAG	3 cut(s)	282, 957, 995
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	8 cut(s)	36, 125, 128, 164, 476, 479, 482, 663
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	4 cut(s)	38, 99, 171, 425
HapII	CCGG	2 cut(s)	30, 798
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	324
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	7 cut(s)	68, 104, 248, 337, 451, 604, 917
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	2 cut(s)	15, 409
HindII	GTYRAC	2 cut(s)	15, 409
HinfI	GANTC	3 cut(s)	440, 611, 899
HpaII	CCGG	2 cut(s)	30, 798
Hpy166II	GTNNAC	4 cut(s)	15, 409, 724, 842
Hpy188I	TCNGA	7 cut(s)	55, 81, 400, 431, 616, 639, 1008
Hpy188III	TCNNGA	3 cut(s)	65, 245, 608
Hpy8I	GTNNAC	4 cut(s)	15, 409, 724, 842
Hpy99I	CGWCG	2 cut(s)	22, 431
HpyAV	CCTTC	6 cut(s)	16, 98, 348, 644, 842, 869
HpyCH4III	ACNGT	3 cut(s)	119, 135, 143
HpyCH4V	TGCA	6 cut(s)	49, 166, 189, 665, 842, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 444, 481
HpyF3I	CTNAG	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	7 cut(s)	68, 104, 248, 337, 451, 604, 917
HspAI	GCGC	1 cut(s)	322
Ksp22I	TGATCA	4 cut(s)	241, 361, 823, 928
LmnI	GCTCC	2 cut(s)	87, 806
Lsp1109I	GCAGC	6 cut(s)	139, 150, 465, 468, 487, 649
MaeI	CTAG	3 cut(s)	282, 957, 995
MfeI	CAATTG	2 cut(s)	264, 291
MhlI	GDGCHC	3 cut(s)	92, 581, 844
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	6 cut(s)	72, 256, 264, 291, 778, 788
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	449, 893
MmeI	TCCRAC	2 cut(s)	409, 516
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	6 cut(s)	369, 458, 672, 861, 894, 1038
MslI	CAYNNNNRTG	3 cut(s)	144, 369, 1030
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	163, 478
MspI	CCGG	2 cut(s)	30, 798
MspR9I	CCNGG	2 cut(s)	31, 799
MunI	CAATTG	2 cut(s)	264, 291
MvnI	CGCG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	3 cut(s)	96, 444, 481
NciI	CCSGG	2 cut(s)	31, 799
NlaIII	CATG	7 cut(s)	68, 104, 248, 337, 451, 604, 917
NmeAIII	GCCGAG	1 cut(s)	638
PagI	TCATGA	2 cut(s)	64, 244
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	611
PfoI	TCCNGGA	1 cut(s)	797
PkrI	GCNGC	8 cut(s)	37, 126, 129, 165, 477, 480, 483, 664
PleI	GAGTC	2 cut(s)	448, 893
PpsI	GAGTC	2 cut(s)	448, 893
PshBI	ATTAAT	3 cut(s)	369, 861, 894
PspPI	GGNCC	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	481
PvuII	CAGCTG	2 cut(s)	163, 478
RsaI	GTAC	3 cut(s)	137, 158, 536
RsaNI	GTAC	3 cut(s)	136, 157, 535
RseI	CAYNNNNRTG	3 cut(s)	144, 369, 1030
SaqAI	TTAA	6 cut(s)	369, 458, 672, 861, 894, 1038
SatI	GCNGC	8 cut(s)	36, 125, 128, 164, 476, 479, 482, 663
Sau96I	GGNCC	1 cut(s)	724
SchI	GAGTC	2 cut(s)	449, 893
ScrFI	CCNGG	2 cut(s)	31, 799
SduI	GDGCHC	3 cut(s)	92, 581, 844
SetI	ASST	7 cut(s)	165, 309, 480, 672, 729, 823, 853
SinI	GGWCC	1 cut(s)	724
SmiMI	CAYNNNNRTG	3 cut(s)	144, 369, 1030
SmlI	CTYRAG	2 cut(s)	196, 606
SmoI	CTYRAG	2 cut(s)	196, 606
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	6 cut(s)	72, 256, 264, 291, 778, 788
SsiI	CCGC	3 cut(s)	35, 125, 1000
SspMI	CTAG	3 cut(s)	282, 957, 995
StyD4I	CCNGG	2 cut(s)	29, 797
StyI	CCWWGG	2 cut(s)	711, 847
TaaI	ACNGT	3 cut(s)	119, 135, 143
TasI	AATT	6 cut(s)	72, 256, 264, 291, 778, 788
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	2 cut(s)	38, 127
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	6 cut(s)	369, 458, 672, 861, 894, 1038
Tru9I	TTAA	6 cut(s)	369, 458, 672, 861, 894, 1038
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	6 cut(s)	127, 163, 475, 478, 481, 662
TspDTI	ATGAA	8 cut(s)	65, 84, 117, 162, 381, 589, 1014, 1029
TspRI	CASTG	1 cut(s)	12
VneI	GTGCAC	1 cut(s)	840
VpaK11BI	GGWCC	1 cut(s)	724
VspI	ATTAAT	3 cut(s)	369, 861, 894
XagI	CCTNNNNNAGG	1 cut(s)	960
XapI	RAATTY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XspI	CTAG	3 cut(s)	282, 957, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.