RchiOBHm_Chr3g0479341

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
25177845 .. 25179894
2050 bp
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UTR
Exon/CDS
Intron
PRQ44444

Sequence Viewer

Length: 1602 bp
ATGCTGAACAAAAATGAGCTTCAAATTTTGCTTCTTGGCGCCATTGCTGCAGCTGGTCATGGAGTAATTTTTCCTGTTTTCGGCTTACTACTCTCAAAAGTCATTAAAATGTTCTATGAACCGCATAACGAGCTACGAGAAGACTCAAAAACATGGGCAGGAGTGTATGTAGGGATGGGATGCTTTGCACTGGCTGTCATTCCAGTGCAGAATATCTTATTTGCAATTGCAGGTGGAAAATTGATAAAGCAAATTCGTTCCTTGACATTCCAGAAGGTTGTGCACCAACAAATTAGTTGGTTTGATGATCCTGCAAAGTCAAGTGGTGCCATTGGTGCAAGGTTGTCTTCTGATGCTTCAACCGTGAAGGCTCTTGTTGGTGATGCTTTAGCATTGATTGCACAGAATATAGCGACAGTCATAGCAGGGTTGATTATAAGTTTTACAGCTAACTGGAAACTAGCGCTTATAATTTTAGCCATGTCGCCATTGCTGATTATGCAAGGAGTACTGCAAACAAAATTTCTTCAAGGGTTTAGTGCAGATGCTAAGGTTTTGTATGAAGAAGCAAGCCAAGTGGCAAATGATGCAATTGGTAGCATTCGAACTGTTGCATCATTTTGTTCTGAAAAGAAGGTGATGGAAGCCTACGAGAAGAAGTGCGATGCTCCTATGAAACAAGGAGTACGGTTAGGAGTAGTGAGTGGAGTAGGTTTTGGCTTCTCGTTCTTCGTAATGTTCTGTACAAATGCGCTAATTTTCTATATTGGAGCTATTCTTGTGAAAAATGGGCAAGCTACGTTTGAACAAGTATTCATGGGGTTTCAGAATCTAGTGACTAGTGGTATGGGTCCTGACTCCAACAAAGCAAAGGACTCAGCAGCTTCGATATTTAAGATTCTTGACAGCAAGCCTATGATTGATTCGAGCAGCGATACAGGCACTACATTATCGAGCATAACCGGAGAAATTGATCTCGAGCATGTTAGCTTCAAATATCCCACAAGGCCAGATGTGCAGATATTTAAAGACATTTGTTTGAAAATACCCTCCGGAAAGGTCTCAATTCTCAAAGAGCGATTCTATGACCCCGATTCAGGTCGCGTACTAATAGATGGAGTGGAAATCAACAAGTTCAAGCTAAACTGGTTGAGGCAACAAATAGGTTTGCGTGGAGATGTAACTAAAGAAGAGATCATTGCTGCCACAAAAGCATCAAATGCACACACCTTCATATCTTTACTAACTCATGGCTATGACACCTCTGTCGGGGAACGAGGGGTTCAACTATCTGGAGGGCAGAAGCAAAGAATAGTCATTGCAAGGGCTATTCTAAAAGACCCGAAAATCCTCTTGCTCGATGAAGCTACAAGTGCACTAGATGCAGAATCAGAACGCATAGTACAAGATGCTTTGGACAGTGTTATGCTGAATAGAACAACTGTGGTCGTTGCTCACCGCCTTACCACGATTAAAGGGGCAGACATAATTGCTGTGGTGAAGAACGGCGTGATTGCTGAGAAGGGTAGCCATGATTCTCTAATGAATATCACTGAAGGTGCTTATGCATCTTTGGTGGCACTTCATTCCAACTCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

533

Amino Acids

57.48

Weight (kDa)

8.39

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 10 - 280 6.5e-60 ABC transporter transmembrane region
ABC_tran PF00005 353 - 458 1.7e-14 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 437, 470
AarI CACCTGC 1 cut(s) 221
AasI GACNNNNNNGTC 1 cut(s) 1265
Acc36I ACCTGC 1 cut(s) 221
AccB1I GGYRCC 2 cut(s) 38, 326
AccII CGCG 1 cut(s) 1104
AccIII TCCGGA 1 cut(s) 1052
AciI CCGC 2 cut(s) 122, 1459
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 3 cut(s) 24, 252, 521
AcuI CTGAAG 1 cut(s) 1575
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 5 cut(s) 510, 687, 745, 1107, 1404
AfeI AGCGCT 1 cut(s) 465
AfiI CCNNNNNNNGG 3 cut(s) 80, 1097, 1269
AgsI TTSAA 8 cut(s) 23, 360, 530, 806, 994, 1042, 1138, 1286
AhlI ACTAGT 1 cut(s) 839
Alw21I GWGCWC 2 cut(s) 285, 1378
Alw26I GTCTC 1 cut(s) 1066
Alw44I GTGCAC 2 cut(s) 281, 1374
AlwI GGATC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 977
Aor13HI TCCGGA 1 cut(s) 1052
Aor51HI AGCGCT 1 cut(s) 465
AoxI GGCC 1 cut(s) 1007
ApaLI GTGCAC 2 cut(s) 281, 1374
ApeKI GCWGC 5 cut(s) 47, 50, 881, 930, 1202
ApoI RAATTY 3 cut(s) 24, 252, 521
AspLEI GCGC 3 cut(s) 41, 466, 754
AspS9I GGNCC 1 cut(s) 851
AsuHPI GGTGA 4 cut(s) 392, 649, 1448, 1510
AsuII TTCGAA 1 cut(s) 604
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 1 cut(s) 851
BaeGI GKGCMC 2 cut(s) 285, 1378
BanI GGYRCC 2 cut(s) 38, 326
BbsI GAAGAC 2 cut(s) 147, 339
Bbv12I GWGCWC 2 cut(s) 285, 1378
BbvI GCAGC 5 cut(s) 34, 62, 893, 942, 1189
BccI CCATC 3 cut(s) 169, 634, 1109
BceAI ACGGC 1 cut(s) 1522
BcoDI GTCTC 1 cut(s) 1066
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 4 cut(s) 461, 833, 840, 1379
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 2 cut(s) 42, 467
BfuAI ACCTGC 1 cut(s) 221
BisI GCNGC 5 cut(s) 48, 51, 882, 931, 1203
BlsI GCNGC 5 cut(s) 49, 52, 883, 932, 1204
BmcAI AGTACT 1 cut(s) 510
Bme18I GGWCC 1 cut(s) 851
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 3 cut(s) 40, 328, 852
BpiI GAAGAC 2 cut(s) 147, 339
BpmI CTGGAG 1 cut(s) 1314
Bpu10I CCTNAGC 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 1066
BsaWI WCCGGW 2 cut(s) 962, 1052
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 1097, 1269
Bse1I ACTGG 4 cut(s) 195, 203, 458, 1151
Bse3DI GCAATG 4 cut(s) 42, 488, 1197, 1317
BseAI TCCGGA 1 cut(s) 1052
BseGI GGATG 2 cut(s) 180, 185
BseLI CCNNNNNNNGG 3 cut(s) 80, 1097, 1269
BseMI GCAATG 4 cut(s) 42, 488, 1197, 1317
BseMII CTCAG 2 cut(s) 891, 1509
BseNI ACTGG 4 cut(s) 195, 203, 458, 1151
BseSI GKGCMC 2 cut(s) 285, 1378
BseXI GCAGC 5 cut(s) 34, 62, 893, 942, 1189
BsgI GTGCAG 3 cut(s) 227, 561, 1037
Bsh1236I CGCG 1 cut(s) 1104
BshFI GGCC 1 cut(s) 1009
BshNI GGYRCC 2 cut(s) 38, 326
BsiHKAI GWGCWC 2 cut(s) 285, 1378
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 2 cut(s) 963, 1053
BslI CCNNNNNNNGG 3 cut(s) 80, 1097, 1269
BsmAI GTCTC 1 cut(s) 1066
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 1 cut(s) 1009
Bso31I GGTCTC 1 cut(s) 1066
BsoBI CYCGRG 1 cut(s) 977
Bsp119I TTCGAA 1 cut(s) 604
Bsp1286I GDGCHC 2 cut(s) 285, 1378
Bsp13I TCCGGA 1 cut(s) 1052
Bsp1407I TGTACA 1 cut(s) 743
Bsp143I GATC 3 cut(s) 307, 973, 1194
BspACI CCGC 2 cut(s) 122, 1459
BspANI GGCC 1 cut(s) 1009
BspCNI CTCAG 2 cut(s) 890, 1510
BspEI TCCGGA 1 cut(s) 1052
BspFNI CGCG 1 cut(s) 1104
BspLI GGNNCC 3 cut(s) 40, 328, 852
BspMAI CTGCAG 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 1 cut(s) 302
BspT104I TTCGAA 1 cut(s) 604
BspT107I GGYRCC 2 cut(s) 38, 326
BspTNI GGTCTC 1 cut(s) 1066
BsrDI GCAATG 4 cut(s) 42, 488, 1197, 1317
BsrGI TGTACA 1 cut(s) 743
BsrI ACTGG 4 cut(s) 195, 203, 458, 1151
BssMI GATC 3 cut(s) 307, 973, 1194
BssNI GRCGYC 1 cut(s) 39
Bst4CI ACNGT 6 cut(s) 364, 418, 610, 690, 1421, 1444
Bst6I CTCTTC 1 cut(s) 1185
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 4 cut(s) 398, 587, 1220, 1382
BstAUI TGTACA 1 cut(s) 743
BstBI TTCGAA 1 cut(s) 604
BstC8I GCNNGC 3 cut(s) 571, 795, 911
BstDEI CTNAG 3 cut(s) 549, 877, 1518
BstF5I GGATG 2 cut(s) 180, 185
BstFNI CGCG 1 cut(s) 1104
BstH2I RGCGCY 2 cut(s) 42, 467
BstHHI GCGC 3 cut(s) 41, 466, 754
BstKTI GATC 3 cut(s) 310, 976, 1197
BstMAI GTCTC 1 cut(s) 1066
BstMBI GATC 3 cut(s) 307, 973, 1194
BstNSI RCATGY 1 cut(s) 986
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 2 cut(s) 285, 1378
BstUI CGCG 1 cut(s) 1104
BstV1I GCAGC 5 cut(s) 34, 62, 893, 942, 1189
BstV2I GAAGAC 2 cut(s) 147, 339
BsuRI GGCC 1 cut(s) 1009
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 2 cut(s) 180, 185
BtsIMutI CAGTG 4 cut(s) 188, 210, 1426, 1551
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 3 cut(s) 571, 795, 911
CfoI GCGC 3 cut(s) 41, 466, 754
Cfr13I GGNCC 1 cut(s) 851
Csp6I GTAC 5 cut(s) 509, 686, 744, 1106, 1403
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 8 cut(s) 59, 153, 481, 817, 983, 1250, 1532, 1599
CviQI GTAC 5 cut(s) 509, 686, 744, 1106, 1403
DdeI CTNAG 3 cut(s) 549, 877, 1518
DinI GGCGCC 1 cut(s) 40
DpnI GATC 3 cut(s) 309, 975, 1196
DpnII GATC 3 cut(s) 307, 973, 1194
DraI TTTAAA 1 cut(s) 1027
DrdI GACNNNNNNGTC 1 cut(s) 1265
DseDI GACNNNNNNGTC 1 cut(s) 1265
Eam1104I CTCTTC 1 cut(s) 1185
EarI CTCTTC 1 cut(s) 1185
Eco31I GGTCTC 1 cut(s) 1066
Eco47I GGWCC 1 cut(s) 851
Eco47III AGCGCT 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 1575
Eco88I CYCGRG 1 cut(s) 977
EcoO109I RGGNCCY 1 cut(s) 851
EcoT22I ATGCAT 1 cut(s) 1570
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
FaeI CATG 8 cut(s) 62, 156, 484, 820, 986, 1253, 1535, 1602
FalI AAGNNNNNCTT 2 cut(s) 331, 363
FatI CATG 8 cut(s) 58, 152, 480, 816, 982, 1249, 1531, 1598
Fnu4HI GCNGC 5 cut(s) 48, 51, 882, 931, 1203
FokI GGATG 2 cut(s) 187, 192
Fsp4HI GCNGC 5 cut(s) 48, 51, 882, 931, 1203
FspBI CTAG 4 cut(s) 461, 833, 840, 1379
GlaI GCGC 3 cut(s) 40, 465, 753
GluI GCNGC 5 cut(s) 48, 51, 882, 931, 1203
GsuI CTGGAG 1 cut(s) 1314
HaeII RGCGCY 2 cut(s) 42, 467
HaeIII GGCC 1 cut(s) 1009
HapII CCGG 2 cut(s) 963, 1053
HhaI GCGC 3 cut(s) 41, 466, 754
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 8 cut(s) 62, 156, 484, 820, 986, 1253, 1535, 1602
Hin6I GCGC 3 cut(s) 39, 464, 752
HinP1I GCGC 3 cut(s) 39, 464, 752
HpaII CCGG 2 cut(s) 963, 1053
HphI GGTGA 4 cut(s) 392, 649, 1448, 1510
Hpy166II GTNNAC 2 cut(s) 283, 1376
Hpy188I TCNGA 4 cut(s) 352, 628, 828, 1393
Hpy188III TCNNGA 6 cut(s) 271, 854, 902, 977, 1053, 1293
Hpy8I GTNNAC 2 cut(s) 283, 1376
HpyAV CCTTC 6 cut(s) 268, 361, 628, 1240, 1516, 1550
HpyCH4III ACNGT 6 cut(s) 364, 418, 610, 690, 1421, 1444
HpyCH4IV ACGT 1 cut(s) 800
HpyF3I CTNAG 3 cut(s) 549, 877, 1518
HpySE526I ACGT 1 cut(s) 800
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 8 cut(s) 62, 156, 484, 820, 986, 1253, 1535, 1602
HspAI GCGC 3 cut(s) 39, 464, 752
KasI GGCGCC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 1052
Kzo9I GATC 3 cut(s) 307, 973, 1194
LmnI GCTCC 2 cut(s) 673, 770
Lsp1109I GCAGC 5 cut(s) 34, 62, 893, 942, 1189
MaeI CTAG 4 cut(s) 461, 833, 840, 1379
MaeII ACGT 1 cut(s) 800
MaeIII GTNAC 2 cut(s) 835, 1180
MalI GATC 3 cut(s) 309, 975, 1196
MboI GATC 3 cut(s) 307, 973, 1194
MboII GAAGA 8 cut(s) 152, 339, 518, 575, 667, 721, 1202, 1513
MfeI CAATTG 2 cut(s) 225, 591
MhlI GDGCHC 2 cut(s) 285, 1378
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 3 cut(s) 137, 851, 869
MmeI TCCRAC 1 cut(s) 885
MnlI CCTC 6 cut(s) 1060, 1146, 1271, 1273, 1289, 1361
Mph1103I ATGCAT 1 cut(s) 1570
MroI TCCGGA 1 cut(s) 1052
MseI TTAA 4 cut(s) 105, 894, 1026, 1473
MslI CAYNNNNRTG 3 cut(s) 107, 203, 1254
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 2 cut(s) 963, 1053
MunI CAATTG 2 cut(s) 225, 591
Mva1269I GAATGC 1 cut(s) 600
MvnI CGCG 1 cut(s) 1104
NarI GGCGCC 1 cut(s) 39
NdeII GATC 3 cut(s) 307, 973, 1194
NlaIII CATG 8 cut(s) 62, 156, 484, 820, 986, 1253, 1535, 1602
NlaIV GGNNCC 3 cut(s) 40, 328, 852
NmuCI GTSAC 1 cut(s) 835
NsiI ATGCAT 1 cut(s) 1570
NspI RCATGY 1 cut(s) 986
NspV TTCGAA 1 cut(s) 604
PaeR7I CTCGAG 1 cut(s) 977
PaqCI CACCTGC 1 cut(s) 221
PctI GAATGC 1 cut(s) 600
PfeI GAWTC 7 cut(s) 829, 898, 923, 1080, 1094, 1388, 1535
PkrI GCNGC 5 cut(s) 49, 52, 883, 932, 1204
PleI GAGTC 3 cut(s) 137, 851, 869
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 3 cut(s) 137, 851, 869
PpuMI RGGWCCY 1 cut(s) 851
PsiI TTATAA 2 cut(s) 437, 470
Psp5II RGGWCCY 1 cut(s) 851
PspN4I GGNNCC 3 cut(s) 40, 328, 852
PspPI GGNCC 1 cut(s) 851
PspPPI RGGWCCY 1 cut(s) 851
PsrI GAACNNNNNNTAC 2 cut(s) 1386, 1418
PstI CTGCAG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 5 cut(s) 510, 687, 745, 1107, 1404
RsaNI GTAC 5 cut(s) 509, 686, 744, 1106, 1403
RseI CAYNNNNRTG 3 cut(s) 107, 203, 1254
SaqAI TTAA 4 cut(s) 105, 894, 1026, 1473
SatI GCNGC 5 cut(s) 48, 51, 882, 931, 1203
Sau3AI GATC 3 cut(s) 307, 973, 1194
Sau96I GGNCC 1 cut(s) 851
ScaI AGTACT 1 cut(s) 510
SchI GAGTC 3 cut(s) 137, 851, 869
SduI GDGCHC 2 cut(s) 285, 1378
SfcI CTRYAG 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 977
SfuI TTCGAA 1 cut(s) 604
SinI GGWCC 1 cut(s) 851
SlaI CTCGAG 1 cut(s) 977
SmiMI CAYNNNNRTG 3 cut(s) 107, 203, 1254
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
SpeI ACTAGT 1 cut(s) 839
SsiI CCGC 2 cut(s) 122, 1459
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 4 cut(s) 461, 833, 840, 1379
TaaI ACNGT 6 cut(s) 364, 418, 610, 690, 1421, 1444
TaiI ACGT 1 cut(s) 803
TaqI TCGA 6 cut(s) 604, 887, 926, 953, 978, 1359
TatI WGTACW 3 cut(s) 508, 743, 1402
TfiI GAWTC 7 cut(s) 829, 898, 923, 1080, 1094, 1388, 1535
Tru1I TTAA 4 cut(s) 105, 894, 1026, 1473
Tru9I TTAA 4 cut(s) 105, 894, 1026, 1473
TscAI CASTG 4 cut(s) 195, 210, 1426, 1558
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 5 cut(s) 47, 50, 881, 930, 1202
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 8 cut(s) 132, 576, 689, 805, 1222, 1377, 1559, 1574
TspRI CASTG 4 cut(s) 195, 210, 1426, 1558
VneI GTGCAC 2 cut(s) 281, 1374
VpaK11BI GGWCC 1 cut(s) 851
XapI RAATTY 3 cut(s) 24, 252, 521
XceI RCATGY 1 cut(s) 986
XhoI CTCGAG 1 cut(s) 977
XspI CTAG 4 cut(s) 461, 833, 840, 1379
ZrmI AGTACT 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 1570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.