RLG00000023903

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001944
Physical Location & Seq
Reverse (-)
29776537 .. 29783302
6766 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023903

Sequence Viewer

Length: 888 bp
ATGTTACAAAACTTCCTACCAAGTGGTGGTGGTGGTGGTGGTGGTGGTGTTATTGATACAATATCCGGCAGCAGTTCATACCAAAATATGGCATTTTTTGGCAGTGGTATAACATTGGCTTATTTACCACCAGGGTTGCAGGAACCAATAGTGAAGAAGTTGGATTTGGAGAAGGGAATGATGGACTACCGATATGCAAAGTGGGTTGATGTTAAATATGAAGAGATAATTGAAGCAACTTCAATTGACTCCAGCAAAGTCTTACGGTCCTGCACTGCTCAGGTACCTGAGATCAGGAGAATGCTAATTGAGGAACTTTGCCTTCAGACGGTTGCTTTGGTCAGAGAAAGTGGCAGTGGAAAGTCGATAGTGATAGGCCTCATAGAGCTATTCTATGACCCCGATTCAGGTCGTGTACTATTAGATGAAGTGGAAATCAATAAGTTCAAGATAAACTGGCTAAGGCAGCAAATAGGTTTGGTTGGTCAAGAACCAATTCTCTTTAAGGAATGCATTCAAGCCAACACTGCTTATGCTATGACACCTCAGTCGGGGAACGAGGGGCCAGTTCAATTATCTGGAGGACAGAAGCAAAGAATAGCCATTGCAAGGGCTATTCTAAAGGACCCGAAAATCCTTTTCCTCGATGAAGCTACAAGCGCACTAGATGCAGAGTGGGAACGCATAGTACAAGATGCTTTGGACACACTGATGGTAAATAGAACAACTATTGTAGTTGCACACCGCCTTACCACGATCAAAGGGCCGGACATAATTGCTGTGGTCAAGAACGGCGTGATTGTTGAGAAGGGTAGCCATGATTTTCTAATGAAGATCTCTGATGGTGCTGATATATCTTTGGTGGCACTCCATTCAAGCTCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

296

Amino Acids

32.14

Weight (kDa)

5.15

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 109 - 220 6.2e-21 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 547
Acc65I GGTACC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 283
AccB7I CCANNNNNTGG 2 cut(s) 26, 88
AciI CCGC 1 cut(s) 745
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 3 cut(s) 285, 417, 690
AfiI CCNNNNNNNGG 6 cut(s) 26, 88, 328, 407, 551, 609
AgsI TTSAA 6 cut(s) 233, 243, 448, 518, 572, 876
AjnI CCWGG 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 388, 653, 879
AluI AGCT 3 cut(s) 388, 653, 879
AoxI GGCC 3 cut(s) 376, 563, 764
ApeKI GCWGC 2 cut(s) 69, 466
ArsI GACNNNNNNTTYG 2 cut(s) 319, 351
Asp700I GAANNNNTTC 2 cut(s) 495, 513
Asp718I GGTACC 1 cut(s) 283
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 4 cut(s) 267, 563, 625, 764
AvaII GGWCC 2 cut(s) 267, 625
BanI GGYRCC 1 cut(s) 283
BbvI GCAGC 2 cut(s) 81, 478
BccI CCATC 3 cut(s) 175, 706, 836
BceAI ACGGC 1 cut(s) 808
BciT130I CCWGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 665
BglII AGATCT 1 cut(s) 834
BisI GCNGC 2 cut(s) 70, 467
BlsI GCNGC 2 cut(s) 71, 468
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 267, 625
BmgT120I GGNCC 4 cut(s) 267, 563, 625, 764
BmiI GGNNCC 4 cut(s) 144, 285, 564, 627
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 658, 685
BpmI CTGGAG 2 cut(s) 235, 600
Bpu10I CCTNAGC 2 cut(s) 279, 461
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 88, 328, 407, 551, 609
Bse1I ACTGG 2 cut(s) 461, 566
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 131
BseLI CCNNNNNNNGG 6 cut(s) 26, 88, 328, 407, 551, 609
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 3 cut(s) 279, 293, 560
BseNI ACTGG 2 cut(s) 461, 566
BseXI GCAGC 2 cut(s) 81, 478
BsgI GTGCAG 1 cut(s) 256
BshFI GGCC 3 cut(s) 378, 565, 766
BshNI GGYRCC 1 cut(s) 283
BsiSI CCGG 2 cut(s) 66, 767
BslI CCNNNNNNNGG 6 cut(s) 26, 88, 328, 407, 551, 609
BsmI GAATGC 3 cut(s) 306, 513, 515
BsnI GGCC 3 cut(s) 378, 565, 766
Bsp143I GATC 3 cut(s) 291, 756, 834
BspACI CCGC 1 cut(s) 745
BspANI GGCC 3 cut(s) 378, 565, 766
BspCNI CTCAG 3 cut(s) 280, 292, 559
BspLI GGNNCC 4 cut(s) 144, 285, 564, 627
BspT107I GGYRCC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 2 cut(s) 461, 566
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 3 cut(s) 291, 756, 834
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 267, 331
Bst6I CTCTTC 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 668
BstDEI CTNAG 4 cut(s) 279, 288, 461, 546
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 3 cut(s) 294, 759, 837
BstMBI GATC 3 cut(s) 291, 756, 834
BstMWI GCNNNNNNNGC 4 cut(s) 466, 527, 659, 668
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 81, 478
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
BsuRI GGCC 3 cut(s) 378, 565, 766
BtsI GCAGTG 4 cut(s) 109, 273, 361, 525
BtsIMutI CAGTG 5 cut(s) 109, 273, 361, 525, 707
CfoI GCGC 1 cut(s) 662
Cfr13I GGNCC 4 cut(s) 267, 563, 625, 764
Csp6I GTAC 3 cut(s) 284, 416, 689
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 2 cut(s) 818, 885
CviQI GTAC 3 cut(s) 284, 416, 689
DdeI CTNAG 4 cut(s) 279, 288, 461, 546
DpnI GATC 3 cut(s) 293, 758, 836
DpnII GATC 3 cut(s) 291, 756, 834
DrdI GACNNNNNNGTC 1 cut(s) 547
DseDI GACNNNNNNGTC 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 267, 625
Eco57I CTGAAG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 515
FaeI CATG 2 cut(s) 821, 888
FatI CATG 2 cut(s) 817, 884
Fnu4HI GCNGC 2 cut(s) 70, 467
Fsp4HI GCNGC 2 cut(s) 70, 467
FspBI CTAG 1 cut(s) 665
GlaI GCGC 1 cut(s) 661
GluI GCNGC 2 cut(s) 70, 467
GsuI CTGGAG 2 cut(s) 235, 600
HaeIII GGCC 3 cut(s) 378, 565, 766
HapII CCGG 2 cut(s) 66, 767
HhaI GCGC 1 cut(s) 662
Hin1II CATG 2 cut(s) 821, 888
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HinfI GANTC 2 cut(s) 248, 404
HpaII CCGG 2 cut(s) 66, 767
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 3 cut(s) 327, 344, 841
Hpy188III TCNNGA 5 cut(s) 295, 448, 488, 579, 787
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 3 cut(s) 166, 332, 802
HpyCH4III ACNGT 2 cut(s) 267, 331
HpyCH4V TGCA 7 cut(s) 139, 197, 273, 513, 608, 671, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 466, 527, 659, 668
HpyF3I CTNAG 4 cut(s) 279, 288, 461, 546
Hsp92II CATG 2 cut(s) 821, 888
HspAI GCGC 1 cut(s) 660
KpnI GGTACC 1 cut(s) 287
Kzo9I GATC 3 cut(s) 291, 756, 834
Lsp1109I GCAGC 2 cut(s) 81, 478
LweI GCATC 2 cut(s) 658, 685
MaeI CTAG 1 cut(s) 665
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 293, 758, 836
MboI GATC 3 cut(s) 291, 756, 834
MboII GAAGA 3 cut(s) 166, 233, 844
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 1 cut(s) 834
MluCI AATT 6 cut(s) 228, 243, 306, 495, 572, 774
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 6 cut(s) 304, 389, 553, 555, 575, 653
Mph1103I ATGCAT 1 cut(s) 515
MroXI GAANNNNTTC 2 cut(s) 495, 513
MseI TTAA 2 cut(s) 213, 504
MslI CAYNNNNRTG 1 cut(s) 710
MspI CCGG 2 cut(s) 66, 767
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 3 cut(s) 306, 513, 515
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 466, 527, 659, 668
NdeII GATC 3 cut(s) 291, 756, 834
NlaIII CATG 2 cut(s) 821, 888
NlaIV GGNNCC 4 cut(s) 144, 285, 564, 627
NsiI ATGCAT 1 cut(s) 515
PceI AGGCCT 1 cut(s) 378
PctI GAATGC 3 cut(s) 306, 513, 515
PdmI GAANNNNTTC 2 cut(s) 495, 513
PfeI GAWTC 1 cut(s) 404
PflMI CCANNNNNTGG 2 cut(s) 26, 88
PkrI GCNGC 2 cut(s) 71, 468
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 4 cut(s) 144, 285, 564, 627
PspPI GGNCC 4 cut(s) 267, 563, 625, 764
PspPPI RGGWCCY 1 cut(s) 625
PsrI GAACNNNNNNTAC 2 cut(s) 672, 704
PsuI RGATCY 1 cut(s) 834
RsaI GTAC 3 cut(s) 285, 417, 690
RsaNI GTAC 3 cut(s) 284, 416, 689
RseI CAYNNNNRTG 1 cut(s) 710
SaqAI TTAA 2 cut(s) 213, 504
SatI GCNGC 2 cut(s) 70, 467
Sau3AI GATC 3 cut(s) 291, 756, 834
Sau96I GGNCC 4 cut(s) 267, 563, 625, 764
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 132
SetI ASST 8 cut(s) 285, 289, 390, 412, 478, 547, 655, 881
SfaNI GCATC 2 cut(s) 658, 685
SinI GGWCC 2 cut(s) 267, 625
SmiMI CAYNNNNRTG 1 cut(s) 710
Sse9I AATT 6 cut(s) 228, 243, 306, 495, 572, 774
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 1 cut(s) 745
SspMI CTAG 1 cut(s) 665
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 267, 331
TaqI TCGA 2 cut(s) 365, 645
TasI AATT 6 cut(s) 228, 243, 306, 495, 572, 774
TatI WGTACW 2 cut(s) 415, 688
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 2 cut(s) 213, 504
Tru9I TTAA 2 cut(s) 213, 504
TscAI CASTG 5 cut(s) 109, 280, 361, 532, 714
TseI GCWGC 2 cut(s) 69, 466
TspDTI ATGAA 5 cut(s) 66, 234, 441, 663, 845
TspRI CASTG 5 cut(s) 109, 280, 361, 532, 714
Van91I CCANNNNNTGG 2 cut(s) 26, 88
VpaK11BI GGWCC 2 cut(s) 267, 625
XmnI GAANNNNTTC 2 cut(s) 495, 513
XspI CTAG 1 cut(s) 665
Zsp2I ATGCAT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.