Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001944

Physical Location & Seq

Genomic Coordinates Reverse (-)

8670833 .. 8697531

Gene Structure 26699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG106000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAGGAGGAGGAGGAGATGGAGATGGAAGAGCAAAAGTTAGCGATCCAGACAAGCAGAAGGTCCCGTTCTACAAGCTGTTTCTGTTCGCAGACCAATATGACGTGGGGTTGATGATCGTCGGGAGTATCTGTGCCATCGGAAACGGGCTGTCGCAGCCGTTCATGACGCTCATCTTCGGCAGTCTTATCAATACTTTCGGACATACTGACCGGGCTCATATCGTCCCCATGATTTCTAAGGATTATGTTTATAAAAGTAGCCAGAAAAAGCAATCTAAGTCGTTCATATATGTTTCCAATAATGACAAGCTTCCACCAAATGCTAAAGCATACAATGCTCGAGTTCAGAAAACATTGGGTCAGGGTACAATTCCTTTTGCTGAAGGCAAAACCCTTGGTGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

136

Amino Acids

14.75

Weight (kDa)

9.33

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46540
fragaria_vesca	FvH4_3g06540 FvH4_6g19120 FvH4_6g19362 FvH4_7g10050
malus_domestica	MD05G1292400.v1.1 MD10G1268300.v1.1 MD10G1268400.v1.1
prunus_persica	Prupe.4G073000_v2.0.a1
pyrus_communis	pycom05g26870 pycom10g22450 pycom10g22470
rosa_chinensis	RchiOBHm_Chr3g0474221 RchiOBHm_Chr3g0474231 RchiOBHm_Chr3g0479341 RchiOBHm_Chr3g0479351 RchiOBHm_Chr5g0012641
rosa_laevigata	RLG00000023583 RLG00000023903 RLG00000023940 RLG00000031931 RLG00000031945
rosa_multiflora	Rmu_sc0015051.1_g000005 Rmu_sc0024687.1_g000002 Rmu_sc0034046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063960 Rroxscaffold_6G00402390 Rroxscaffold_6G00407420
rosa_rugosa	Rorug01G0315600 Rorug02G0062500 Rorug03G0139600 Rorug05G0003300 Rorug05G0003400 Rorug05G0313000
rosa_samantha	Rh3AG190100 Rh3AG225500 Rh3AG225700 Rh3BG219300 Rh4DG026100 Rh5AG097000 Rh5BG093600 Rh5CG106000 Rh5DG092700
rosa_wichuraiana	Rw3G017340 Rw5G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AclWI	GGATC	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	370
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	2 cut(s)	79, 313
AluI	AGCT	2 cut(s)	79, 313
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	14, 20, 146
BceAI	ACGGC	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
BseDI	CCNNGG	1 cut(s)	397
BseRI	GAGGAG	3 cut(s)	24, 27, 30
BseXI	GCAGC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	2 cut(s)	50, 212
BsmFI	GGGAC	2 cut(s)	50, 212
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	46, 117
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	2 cut(s)	46, 117
BssT1I	CCWWGG	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	25
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	240, 279
BstKTI	GATC	2 cut(s)	49, 120
BstMBI	GATC	2 cut(s)	46, 117
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 338
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	106
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	2 cut(s)	166, 232
CviJI	RGCY	6 cut(s)	79, 151, 160, 218, 264, 313
CviKI_1	RGCY	6 cut(s)	79, 151, 160, 218, 264, 313
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	2 cut(s)	240, 279
DpnI	GATC	2 cut(s)	48, 119
DpnII	GATC	2 cut(s)	46, 117
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	2 cut(s)	169, 235
FaqI	GGGAC	2 cut(s)	50, 212
FatI	CATG	2 cut(s)	165, 231
Fnu4HI	GCNGC	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
HapII	CCGG	1 cut(s)	214
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	169, 235
HindIII	AAGCTT	1 cut(s)	311
HpaII	CCGG	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	143, 203, 351
Hpy188III	TCNNGA	3 cut(s)	50, 124, 166
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	55, 380
HpyCH4IV	ACGT	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 338
HpyF3I	CTNAG	2 cut(s)	240, 279
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	169, 235
Kzo9I	GATC	2 cut(s)	46, 117
LguI	GCTCTTC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	63, 227, 278, 350
Lsp1109I	GCAGC	1 cut(s)	169
MaeII	ACGT	1 cut(s)	105
MalI	GATC	2 cut(s)	48, 119
MboI	GATC	2 cut(s)	46, 117
MboII	GAAGA	2 cut(s)	42, 169
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	1 cut(s)	372
MnlI	CCTC	2 cut(s)	5, 8
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	157, 338
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	46, 117
NlaIII	CATG	2 cut(s)	169, 235
NlaIV	GGNNCC	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	342
PagI	TCATGA	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PspXI	VCTCGAGB	1 cut(s)	342
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	25
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	46, 117
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	4 cut(s)	66, 81, 108, 315
Sfr274I	CTCGAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	397
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	343
TasI	AATT	1 cut(s)	372
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	154, 277
VpaK11BI	GGWCC	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.