Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001944

Physical Location & Seq

Genomic Coordinates Reverse (-)

8480120 .. 8482081

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG092700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAAGGAGGAGGAGGAGATGGAGATGGAAGAGCAAAAGTTAACGATCCAGACAAGCAGAAGGTCCCGTTCTACAAGCTGTTTCTGTTCGCAGACCAATATGACGTGGGGTTGATGATCGTTGGGAGTATCTGTGCCATCGGAAACGGGCTGTCGCAGCCGTTCATGACGCTCATCTTCGGCAGTCTTATCAATACTTTCGGACATACTGACCGGGCTCATATCGTCCCCATGATTTCTAAGGTCGCATCTTTTACCGGAGAGAAGCAAGCGATAGAAAAATATAACAAGAAGCTAAAGGTTGCCTACAATAGTACAGTTCAACAAGGACTTGCCACAGGAGTTGGACTTGGTACGTTTATACTTATTGTCTTTGGCACTTATGGACTTGCCATATGGTATGGATCCAAAATGATCATCGAAAAAGGATATAATGGAGGCCAAGTCATCAATGTTATATTTGCAATAATGACGGGTGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

161

Amino Acids

17.27

Weight (kDa)

8.95

Isoelectric Point (pI)

23.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	80 - 159	3.2e-10	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46540
fragaria_vesca	FvH4_3g06540 FvH4_6g19120 FvH4_6g19362 FvH4_7g10050
malus_domestica	MD05G1292400.v1.1 MD10G1268300.v1.1 MD10G1268400.v1.1
prunus_persica	Prupe.4G073000_v2.0.a1
pyrus_communis	pycom05g26870 pycom10g22450 pycom10g22470
rosa_chinensis	RchiOBHm_Chr3g0474221 RchiOBHm_Chr3g0474231 RchiOBHm_Chr3g0479341 RchiOBHm_Chr3g0479351 RchiOBHm_Chr5g0012641
rosa_laevigata	RLG00000023583 RLG00000023903 RLG00000023940 RLG00000031931 RLG00000031945
rosa_multiflora	Rmu_sc0015051.1_g000005 Rmu_sc0024687.1_g000002 Rmu_sc0034046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063960 Rroxscaffold_6G00402390 Rroxscaffold_6G00407420
rosa_rugosa	Rorug01G0315600 Rorug02G0062500 Rorug03G0139600 Rorug05G0003300 Rorug05G0003400 Rorug05G0313000
rosa_samantha	Rh3AG190100 Rh3AG225500 Rh3AG225700 Rh3BG219300 Rh4DG026100 Rh5AG097000 Rh5BG093600 Rh5CG106000 Rh5DG092700
rosa_wichuraiana	Rw3G017340 Rw5G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	41, 399, 412
AfaI	GTAC	2 cut(s)	316, 355
AgsI	TTSAA	1 cut(s)	323
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	2 cut(s)	79, 295
AluI	AGCT	2 cut(s)	79, 295
AlwI	GGATC	3 cut(s)	41, 399, 412
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	14, 20, 146
BceAI	ACGGC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	66, 406
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 429, 459
BseRI	GAGGAG	3 cut(s)	24, 27, 30
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	214, 258
BslFI	GGGAC	2 cut(s)	50, 212
BsmFI	GGGAC	2 cut(s)	50, 212
BsnI	GGCC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	4 cut(s)	46, 117, 404, 414
BspANI	GGCC	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	66, 406
BspPI	GGATC	3 cut(s)	41, 399, 412
BspQI	GCTCTTC	1 cut(s)	25
BssMI	GATC	4 cut(s)	46, 117, 404, 414
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	4 cut(s)	49, 120, 407, 417
BstMBI	GATC	4 cut(s)	46, 117, 404, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	441
BtrI	CACGTC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	270
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	315, 354
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	2 cut(s)	166, 232
CviJI	RGCY	6 cut(s)	79, 151, 160, 218, 295, 441
CviKI_1	RGCY	6 cut(s)	79, 151, 160, 218, 295, 441
CviQI	GTAC	2 cut(s)	315, 354
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	4 cut(s)	48, 119, 406, 416
DpnII	GATC	4 cut(s)	46, 117, 404, 414
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	2 cut(s)	169, 235
FaqI	GGGAC	2 cut(s)	50, 212
FatI	CATG	2 cut(s)	165, 231
FauNDI	CATATG	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	2 cut(s)	214, 258
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	169, 235
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	214, 258
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	143, 203
Hpy188III	TCNNGA	2 cut(s)	50, 166
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	2 cut(s)	105, 356
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	2 cut(s)	105, 356
Hsp92II	CATG	2 cut(s)	169, 235
Ksp22I	TGATCA	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	46, 117, 404, 414
LguI	GCTCTTC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	63, 227, 271, 324
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	257
MaeII	ACGT	2 cut(s)	105, 356
MalI	GATC	4 cut(s)	48, 119, 406, 416
MboI	GATC	4 cut(s)	46, 117, 404, 414
MboII	GAAGA	2 cut(s)	42, 169
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	3 cut(s)	5, 8, 431
MseI	TTAA	1 cut(s)	42
MspI	CCGG	2 cut(s)	214, 258
MspR9I	CCNGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	215
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	4 cut(s)	46, 117, 404, 414
NlaIII	CATG	2 cut(s)	169, 235
NlaIV	GGNNCC	2 cut(s)	66, 406
PagI	TCATGA	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	66, 406
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	2 cut(s)	316, 355
RsaNI	GTAC	2 cut(s)	315, 354
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	4 cut(s)	46, 117, 404, 414
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	7 cut(s)	66, 81, 108, 246, 297, 303, 359
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	2 cut(s)	108, 359
TaqI	TCGA	1 cut(s)	420
TatI	WGTACW	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.