Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001944

Physical Location & Seq

Genomic Coordinates Forward (+)

25594042 .. 25599465

Gene Structure 5424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3363 bp

ATGGAACCAGGAGGAGAGAGGACAATGTTTAAGAATAAAGCTAGTGAGCAAGATAAGCAGAGTGTTTCTTTTTACAAGTTGTTCATTTTTGCTGATCGGTATGACATTTCATTAATGGCTGTAGGAAGTTTGAGTGCGATTGGAAATGGGCTATCGCAGCCCCTTATGACGCTCGTCTTTGGTGGTCTTATCAATTCTTTTGGAGCTCCCAGCTCATATCGTCCCTATAGTTTCTCTAGTGTCTCTAAAATTTTTATATTTGGCCATTGGTACCGGTCTTGCTGCATTTTTGCGTGGGGAAGTTTACAACTCATTACAACTTTTTTCGGCGGTTTTGTAATTGCTTTTATCAAAGGATGGCTTCTAACCTTGGTATTGCTATCCTGCATTCTAACCTTGGTATTGCTATCCTGCATTCCTGCTATTGTCATTGCTGGTGGAGTCATGGCCACTGTTGTTTCAAAAATGTCAACACGCGGGCAACGTGCTTATGCGGAAGCTGGTAGCTACATTATAGGTTGCATCTTTTACCGGAGAGAGGCAAGCGATAGAAAAATACAACCAAAAGCTGAAAATTGCCTACAAGGACTAGCCACAGGGATTGGACTTGGTACATTTATGCTTATTGTATTTAGCACTTGTGGACTTGCCATATGGTACGGATCCAAAATGATCATTGAGAAAGGCTATAATGGCGGCCAAGTCATCAATGTTCTATTTGCAATGATGGCCAGTGGAATGTCACTAGGACAGACATCACCGTCTCTCAATGCATTTACAGCAGGGAAGGCTGCTGCATACAAAATGCTTGAGACCATCAAGCGAATACCAACGATTGATCCCTATGATACTACTGGAGTTGTATTAGAAGATATTAAAGGAGAGGTCGAACTTAAAGATGTGTGCTTCAGGTATCCTGCTAGGCCAGATGTGCAGATCTTTGCTGGATTCTCATTGCATAGTGGAAGCGGGAAATCAACAGTGATAGGCCTGGTAGAAAGATTTAATGATCCAGAAGCTGGTGACGTGCTTATAGATGGTGTCGATTTGAAGAATTTACATCTTAGATCAGTAAGGGAAAGGATTGGGCTTGTAACCACAGAGCTTGCAAATGCAGCAAAGTTCATTGATAAGCTGCCCCAGGGGCTTGACACAATGGTAGGTGAGCAGGGAACATCACTATCGGGTGGACAAACGAAAAGAATTGCAATTGCTAGAGCCATTTTGAAAAACCCAAGAATTCTCCTTCTCGACGAAGCCACAAGGGCCCTAGATACTGAGTCTGAACGAATAGTTCAAGATGCACCTGTGAGATTAATGTCAAATAGGACAACTATTGTTGTTGCACATCGCTTGACAACGATTAGAAATGCTGATGCAATAGCAGTGGTGCATAAAGGGAAAATTATAGAAAAAGGTACTCATGATGAATTGACCAAATATCCAGAAGGAACTTACAACCAACTAATTCGCATGCAGGAAGATGTGGAACCAATTGATCTTGATACTAGTTTAGATAAAAATAAGACTATGCGTAGCTTTGGAAGCAAGAGATTATCAATAGGGACATCTTTAAGCAGAGGTTCATCAAGTAGCCGGCTATCCTCCACCATTTGCAGCTTTGGTACTCCTGCTCTAGTTAACTGCCACGTAATTGAAGTACAAGACGAGGAGAGCCTTGGAAAACCTAAGGTTGATCCTGAAGAGCGTAAAACAGTTTCCATCAAAAGGTTGGCAATGCTGAACAAAAATGAGCTTCCAATTTTGCTTCTTGGCGCCATTGCTGCAGCTGGTCATGGAGTAATTTTTCCTGTTTTCGGCTTACTACTCTCAAAAGCCATTAAAATGTTCTATGAACTGCATAACAAGCCGCGAGAAGACTCAAAAACATGGGCAGGAGTGTATGTAGGGATGGGATGCTTTGCACTGGCTGTCATTCCAGTGCAGAATTTCTTATTTGCAATTGCTGGTGGAAAATTGATAAAGCAAATTTGTTCCTTGACATTCCAGAAGGTTGTGCACCAACAAATCAGTTGGTTTGATGATCCTACAAATTCAAGTGGTGCCATTGGTGCAAGGCTGTCTTCTGATGCTTCAACCGTGAAGGCTCTTGTTGGTGATGCTTTAGCATTGATTGCACAGAATATAGCAACAGTCGTAGCAGGGTTGATTATAGGTTTTATAGCTGACTGGAAACTAGCGCTTATAATTTTGGCCGTGTCGCCATTGCTGATTATGCAAGGAGTACTGCAAACAAAATTTCTTCAGGGGTTTAGTGCAGATGCTAAGGTTATGTATGAAGAAGCAAGCCAAGTGGCAAATGATGCAATTGGTAGCATTCGAACTGTTGCATCATTTTGTTCTGAAAAGAAGGTGATGGAAGCCTACGAGAAGAAGTGCGATGCTCCTATGAAACAAGGAGTACGGTTAGGAGTAGTGAGTGGGGTAGGTTTTGGCTTCTCGTTCTTCGTAATGTTCTGTACAAATGCGCTAATTTTCTATATTGGAGCTATTCTTGTGAAAAATGCGCAAGCTACAGTTGAACAAGTATTCATGGTATTCTTTGCTTTGACAATCTCAGCAGTAGGGGTTTCAGAATCTAGTGGTAAGGGTCCTGACTCCAACAAAGCAAAGGACTCAGCAGCTTCGATATTTAAGATTCTTGACAGCAAGCCTATGATTGATTCGAGCAGCGATAAAATTGATCTCGAGCATGTTAGCTTCAAATATCCCACAAGGCCAGATGTGCAGATATTTAAAGACATTTGTTTGAAAATACCCTCTGGAAAGACCGTTGCTTTGGTTGGAGAGAGTGGTAGTGGGAAATTGACAGTGATAGGTCTCATAGAGCGATTCTATGACCCCGATTCAGGTCGTAACCGATTCTCTTTAACGAATCCATTCGGACTAACATTGATTGCTTGTGGCAAGCGTGGAGATGTAACTGAAGAAGAGATCATTGCTGCCACAAAAGCATCAAATGCACACACCTTCATATCTTTACTACCTCAAGGCTATGACACCTCTGTCGGGGAACGAGGGGTTCAACTATCTGGAGGGCAGAAGCAAAGAATAGCCATTGCAAGGGCTATTCTAAAAGACCCGAAAATCCTCTTGCTCGATGAAGCTACAAGTGCACTAGATGCAGAATCAGAACTCATAGTACAAAATGCTTTGGACAGAGTTATGGTGAATAGAACAACTGTGGTCGTTGCTCACGGCCTTACCACGATTAAAGGGGCAGACATAATTGCTGTGGTGAAGAACGGCGTGATTGCTGAGAAGGGTAGCCATGATTCTCTAATGAATATCACTGAAGGTGCTTATGCATCTTTGGTGGCACTTCATTCTAACTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1121

Amino Acids

120.75

Weight (kDa)

8.74

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	320 - 421	6.3e-17	ABC transporter
ABC_membrane	PF00664	589 - 861	6.1e-59	ABC transporter transmembrane region
ABC_tran	PF00005	920 - 1045	6.2e-20	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46540
fragaria_vesca	FvH4_3g06540 FvH4_6g19120 FvH4_6g19362 FvH4_7g10050
malus_domestica	MD05G1292400.v1.1 MD10G1268300.v1.1 MD10G1268400.v1.1
prunus_persica	Prupe.4G073000_v2.0.a1
pyrus_communis	pycom05g26870 pycom10g22450 pycom10g22470
rosa_chinensis	RchiOBHm_Chr3g0474221 RchiOBHm_Chr3g0474231 RchiOBHm_Chr3g0479341 RchiOBHm_Chr3g0479351 RchiOBHm_Chr5g0012641
rosa_laevigata	RLG00000023583 RLG00000023903 RLG00000023940 RLG00000031931 RLG00000031945
rosa_multiflora	Rmu_sc0015051.1_g000005 Rmu_sc0024687.1_g000002 Rmu_sc0034046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063960 Rroxscaffold_6G00402390 Rroxscaffold_6G00407420
rosa_rugosa	Rorug01G0315600 Rorug02G0062500 Rorug03G0139600 Rorug05G0003300 Rorug05G0003400 Rorug05G0313000
rosa_samantha	Rh3AG190100 Rh3AG225500 Rh3AG225700 Rh3BG219300 Rh4DG026100 Rh5AG097000 Rh5BG093600 Rh5CG106000 Rh5DG092700
rosa_wichuraiana	Rw3G017340 Rw5G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2207
AasI	GACNNNNNNGTC	2 cut(s)	760, 3026
Acc16I	TGCGCA	1 cut(s)	2529
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	3 cut(s)	270, 1775, 2063
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AccII	CGCG	2 cut(s)	477, 1873
AciI	CCGC	6 cut(s)	330, 477, 494, 696, 969, 1871
AclWI	GGATC	6 cut(s)	657, 670, 833, 1004, 1691, 2039
AcoI	YGGCCR	5 cut(s)	262, 447, 697, 729, 2214
AcsI	RAATTY	7 cut(s)	249, 1054, 1239, 1948, 1989, 2053, 2258
AcuI	CTGAAG	5 cut(s)	892, 1722, 2249, 2967, 3336
AcyI	GRCGYC	1 cut(s)	1776
AfeI	AGCGCT	1 cut(s)	2202
AfiI	CCNNNNNNNGG	7 cut(s)	538, 1019, 1728, 1817, 2870, 3030, 3084
AgeI	ACCGGT	1 cut(s)	273
AhlI	ACTAGT	1 cut(s)	1508
AjiI	CACGTC	1 cut(s)	1027
AjnI	CCWGG	3 cut(s)	7, 990, 1140
Alw21I	GWGCWC	3 cut(s)	208, 2022, 3139
Alw26I	GTCTC	4 cut(s)	247, 768, 806, 2846
Alw44I	GTGCAC	2 cut(s)	2018, 3135
AlwI	GGATC	6 cut(s)	657, 670, 833, 1004, 1691, 2039
AlwNI	CAGNNNCTG	1 cut(s)	1019
Ama87I	CYCGRG	1 cut(s)	2708
Aor51HI	AGCGCT	1 cut(s)	2202
ApaI	GGGCCC	1 cut(s)	1270
ApaLI	GTGCAC	2 cut(s)	2018, 3135
ApoI	RAATTY	7 cut(s)	249, 1054, 1239, 1948, 1989, 2053, 2258
ArsI	GACNNNNNNTTYG	2 cut(s)	2782, 2814
AseI	ATTAAT	2 cut(s)	113, 1316
AsiGI	ACCGGT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	2900
Asp718I	GGTACC	1 cut(s)	270
AspLEI	GCGC	4 cut(s)	1778, 2203, 2491, 2530
AspS9I	GGNCC	3 cut(s)	1266, 1267, 2612
AsuHPI	GGTGA	7 cut(s)	750, 1034, 1175, 2129, 2386, 3202, 3271
AsuII	TTCGAA	1 cut(s)	2341
AvaI	CYCGRG	1 cut(s)	2708
AvaII	GGWCC	1 cut(s)	2612
AxyI	CCTNAGG	1 cut(s)	1689
BaeGI	GKGCMC	3 cut(s)	1270, 2022, 3139
BalI	TGGCCA	3 cut(s)	264, 449, 731
BamHI	GGATCC	1 cut(s)	662
BanI	GGYRCC	3 cut(s)	270, 1775, 2063
BanII	GRGCYC	2 cut(s)	208, 1270
BbsI	GAAGAC	2 cut(s)	1884, 2076
Bbv12I	GWGCWC	3 cut(s)	208, 2022, 3139
BccI	CCATC	7 cut(s)	351, 721, 824, 1031, 1730, 1906, 2371
BceAI	ACGGC	3 cut(s)	2201, 3235, 3283
BciT130I	CCWGG	3 cut(s)	9, 992, 1142
BciVI	GTATCC	1 cut(s)	924
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	4 cut(s)	247, 768, 806, 2846
BcuI	ACTAGT	1 cut(s)	1508
BfmI	CTRYAG	4 cut(s)	120, 226, 1785, 2535
BfoI	RGCGCY	2 cut(s)	1779, 2204
BfuI	GTATCC	1 cut(s)	924
BglI	GCCNNNNNGGC	2 cut(s)	1144, 1265
BglII	AGATCT	1 cut(s)	936
BmcAI	AGTACT	1 cut(s)	2247
Bme1390I	CCNGG	3 cut(s)	9, 992, 1142
Bme18I	GGWCC	1 cut(s)	2612
BmeT110I	CYCGRG	1 cut(s)	2708
BmgBI	CACGTC	1 cut(s)	1027
BmgT120I	GGNCC	3 cut(s)	1266, 1267, 2612
BmiI	GGNNCC	8 cut(s)	6, 272, 664, 1268, 1491, 1777, 2065, 2613
BmrFI	CCNGG	3 cut(s)	9, 992, 1142
BoxI	GACNNNNGTC	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	1884, 2076
BpmI	CTGGAG	2 cut(s)	876, 3075
Bpu10I	CCTNAGC	1 cut(s)	2286
Bpu14I	TTCGAA	1 cut(s)	2341
BpuEI	CTTGAG	2 cut(s)	830, 2994
BsaAI	YACGTR	1 cut(s)	1651
BsaHI	GRCGYC	1 cut(s)	1776
BsaI	GGTCTC	2 cut(s)	806, 2846
BsaJI	CCNNGG	5 cut(s)	369, 396, 1140, 1141, 1678
BsaWI	WCCGGW	2 cut(s)	273, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	1890, 1920
Bsc4I	CCNNNNNNNGG	7 cut(s)	538, 1019, 1728, 1817, 2870, 3030, 3084
Bse118I	RCCGGY	2 cut(s)	273, 1596
Bse1I	ACTGG	5 cut(s)	732, 859, 1932, 1940, 2195
Bse21I	CCTNAGG	1 cut(s)	1689
Bse3DI	GCAATG	8 cut(s)	429, 729, 953, 1743, 1779, 2225, 2958, 3078
BseBI	CCWGG	3 cut(s)	9, 992, 1142
BseDI	CCNNGG	5 cut(s)	369, 396, 1140, 1141, 1678
BseGI	GGATG	3 cut(s)	362, 1917, 1922
BseLI	CCNNNNNNNGG	7 cut(s)	538, 1019, 1728, 1817, 2870, 3030, 3084
BseMI	GCAATG	8 cut(s)	429, 729, 953, 1743, 1779, 2225, 2958, 3078
BseMII	CTCAG	4 cut(s)	1269, 2592, 2652, 3270
BseNI	ACTGG	5 cut(s)	732, 859, 1932, 1940, 2195
BseRI	GAGGAG	2 cut(s)	27, 1685
BseSI	GKGCMC	3 cut(s)	1270, 2022, 3139
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	4 cut(s)	953, 1964, 2298, 2768
Bsh1236I	CGCG	2 cut(s)	477, 1873
BshNI	GGYRCC	3 cut(s)	270, 1775, 2063
BshTI	ACCGGT	1 cut(s)	273
BsiHKAI	GWGCWC	3 cut(s)	208, 2022, 3139
BsiHKCI	CYCGRG	1 cut(s)	2708
BsiSI	CCGG	3 cut(s)	274, 532, 1597
BslFI	GGGAC	2 cut(s)	207, 1579
BslI	CCNNNNNNNGG	7 cut(s)	538, 1019, 1728, 1817, 2870, 3030, 3084
BsmAI	GTCTC	4 cut(s)	247, 768, 806, 2846
BsmBI	CGTCTC	1 cut(s)	768
BsmFI	GGGAC	2 cut(s)	207, 1579
BsmI	GAATGC	3 cut(s)	387, 414, 2337
Bso31I	GGTCTC	2 cut(s)	806, 2846
BsoBI	CYCGRG	1 cut(s)	2708
Bsp119I	TTCGAA	1 cut(s)	2341
Bsp120I	GGGCCC	1 cut(s)	1266
Bsp1286I	GDGCHC	4 cut(s)	208, 1270, 2022, 3139
Bsp1407I	TGTACA	1 cut(s)	2480
BspACI	CCGC	6 cut(s)	330, 477, 494, 696, 969, 1871
BspCNI	CTCAG	4 cut(s)	1270, 2591, 2651, 3271
BspFNI	CGCG	2 cut(s)	477, 1873
BspHI	TCATGA	1 cut(s)	1423
BspLI	GGNNCC	8 cut(s)	6, 272, 664, 1268, 1491, 1777, 2065, 2613
BspMAI	CTGCAG	1 cut(s)	1789
BspPI	GGATC	6 cut(s)	657, 670, 833, 1004, 1691, 2039
BspQI	GCTCTTC	1 cut(s)	1698
BspT104I	TTCGAA	1 cut(s)	2341
BspT107I	GGYRCC	3 cut(s)	270, 1775, 2063
BspTNI	GGTCTC	2 cut(s)	806, 2846
BsrDI	GCAATG	8 cut(s)	429, 729, 953, 1743, 1779, 2225, 2958, 3078
BsrFI	RCCGGY	2 cut(s)	273, 1596
BsrGI	TGTACA	1 cut(s)	2480
BsrI	ACTGG	5 cut(s)	732, 859, 1932, 1940, 2195
BssAI	RCCGGY	2 cut(s)	273, 1596
BssECI	CCNNGG	5 cut(s)	369, 396, 1140, 1141, 1678
BssNI	GRCGYC	1 cut(s)	1776
BssT1I	CCWWGG	3 cut(s)	369, 396, 1678
Bst2UI	CCWGG	3 cut(s)	9, 992, 1142
Bst6I	CTCTTC	2 cut(s)	1698, 2946
BstACI	GRCGYC	1 cut(s)	1776
BstAPI	GCANNNNNTGC	4 cut(s)	2135, 2324, 2981, 3143
BstAUI	TGTACA	1 cut(s)	2480
BstBAI	YACGTR	1 cut(s)	1651
BstBI	TTCGAA	1 cut(s)	2341
BstC8I	GCNNGC	9 cut(s)	479, 544, 1107, 1475, 1598, 2308, 2532, 2672, 2930
BstDEI	CTNAG	7 cut(s)	1064, 1278, 1689, 2286, 2578, 2638, 3279
BstF5I	GGATG	3 cut(s)	362, 1917, 1922
BstFNI	CGCG	2 cut(s)	477, 1873
BstH2I	RGCGCY	2 cut(s)	1779, 2204
BstHHI	GCGC	4 cut(s)	1778, 2203, 2491, 2530
BstMAI	GTCTC	4 cut(s)	247, 768, 806, 2846
BstNI	CCWGG	3 cut(s)	9, 992, 1142
BstNSI	RCATGY	2 cut(s)	1477, 2717
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	3 cut(s)	7, 990, 1140
BstSFI	CTRYAG	4 cut(s)	120, 226, 1785, 2535
BstSLI	GKGCMC	3 cut(s)	1270, 2022, 3139
BstUI	CGCG	2 cut(s)	477, 1873
BstV2I	GAAGAC	2 cut(s)	1884, 2076
BstX2I	RGATCY	2 cut(s)	662, 936
BstYI	RGATCY	2 cut(s)	662, 936
Bsu36I	CCTNAGG	1 cut(s)	1689
BsuI	GTATCC	1 cut(s)	924
BtgZI	GCGATG	2 cut(s)	1334, 2415
BtrI	CACGTC	1 cut(s)	1027
BtsCI	GGATG	3 cut(s)	362, 1917, 1922
BtsI	GCAGTG	1 cut(s)	1392
BtsIMutI	CAGTG	8 cut(s)	450, 739, 987, 1392, 1925, 1947, 2838, 3312
Cac8I	GCNNGC	9 cut(s)	479, 544, 1107, 1475, 1598, 2308, 2532, 2672, 2930
CaiI	CAGNNNCTG	1 cut(s)	1019
CciI	TCATGA	1 cut(s)	1423
CfoI	GCGC	4 cut(s)	1778, 2203, 2491, 2530
Cfr10I	RCCGGY	2 cut(s)	273, 1596
Cfr13I	GGNCC	3 cut(s)	1266, 1267, 2612
CseI	GACGC	1 cut(s)	178
CspAI	ACCGGT	1 cut(s)	273
CspCI	CAANNNNNGTGG	8 cut(s)	583, 618, 1087, 1122, 1368, 1403, 2295, 2330
CviAII	CATG	9 cut(s)	445, 1424, 1474, 1796, 1890, 2554, 2714, 3293, 3360
DdeI	CTNAG	7 cut(s)	1064, 1278, 1689, 2286, 2578, 2638, 3279
DinI	GGCGCC	1 cut(s)	1777
DraI	TTTAAA	1 cut(s)	2758
DrdI	GACNNNNNNGTC	2 cut(s)	760, 3026
DseDI	GACNNNNNNGTC	2 cut(s)	760, 3026
EaeI	YGGCCR	5 cut(s)	262, 447, 697, 729, 2214
Eam1104I	CTCTTC	2 cut(s)	1698, 2946
EarI	CTCTTC	2 cut(s)	1698, 2946
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	3 cut(s)	369, 396, 1678
Eco147I	AGGCCT	1 cut(s)	990
Eco24I	GRGCYC	2 cut(s)	208, 1270
Eco31I	GGTCTC	2 cut(s)	806, 2846
Eco47I	GGWCC	1 cut(s)	2612
Eco47III	AGCGCT	1 cut(s)	2202
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	5 cut(s)	892, 1722, 2249, 2967, 3336
Eco81I	CCTNAGG	1 cut(s)	1689
Eco88I	CYCGRG	1 cut(s)	2708
EcoICRI	GAGCTC	1 cut(s)	206
EcoO109I	RGGNCCY	3 cut(s)	1266, 1267, 2612
EcoRI	GAATTC	1 cut(s)	1239
EcoRII	CCWGG	3 cut(s)	7, 990, 1140
EcoT14I	CCWWGG	3 cut(s)	369, 396, 1678
EcoT22I	ATGCAT	2 cut(s)	775, 3331
EcoT38I	GRGCYC	2 cut(s)	208, 1270
EgeI	GGCGCC	1 cut(s)	1777
EheI	GGCGCC	1 cut(s)	1777
ErhI	CCWWGG	3 cut(s)	369, 396, 1678
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	9 cut(s)	448, 1427, 1477, 1799, 1893, 2557, 2717, 3296, 3363
FalI	AAGNNNNNCTT	4 cut(s)	345, 377, 2068, 2100
FaqI	GGGAC	2 cut(s)	207, 1579
FatI	CATG	9 cut(s)	444, 1423, 1473, 1795, 1889, 2553, 2713, 3292, 3359
FauI	CCCGC	2 cut(s)	470, 962
FauNDI	CATATG	1 cut(s)	653
FbaI	TGATCA	1 cut(s)	672
FokI	GGATG	3 cut(s)	369, 1924, 1929
FriOI	GRGCYC	2 cut(s)	208, 1270
FspI	TGCGCA	1 cut(s)	2529
GlaI	GCGC	4 cut(s)	1777, 2202, 2490, 2529
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	876, 3075
HaeII	RGCGCY	2 cut(s)	1779, 2204
HapII	CCGG	3 cut(s)	274, 532, 1597
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	4 cut(s)	1778, 2203, 2491, 2530
Hin1I	GRCGYC	1 cut(s)	1776
Hin1II	CATG	9 cut(s)	448, 1427, 1477, 1799, 1893, 2557, 2717, 3296, 3363
Hin6I	GCGC	4 cut(s)	1776, 2201, 2489, 2528
HinP1I	GCGC	4 cut(s)	1776, 2201, 2489, 2528
HincII	GTYRAC	2 cut(s)	471, 1642
HindII	GTYRAC	2 cut(s)	471, 1642
HpaI	GTTAAC	1 cut(s)	1642
HpaII	CCGG	3 cut(s)	274, 532, 1597
HphI	GGTGA	7 cut(s)	750, 1034, 1175, 2129, 2386, 3202, 3271
Hpy166II	GTNNAC	7 cut(s)	305, 471, 644, 1190, 1642, 2020, 3137
Hpy188I	TCNGA	6 cut(s)	1285, 2089, 2365, 2596, 2906, 3154
Hpy8I	GTNNAC	7 cut(s)	305, 471, 644, 1190, 1642, 2020, 3137
Hpy99I	CGWCG	1 cut(s)	1256
HpyAV	CCTTC	9 cut(s)	781, 1256, 1442, 2005, 2098, 2365, 3001, 3277, 3311
HpyCH4IV	ACGT	3 cut(s)	484, 1026, 1650
HpyF3I	CTNAG	7 cut(s)	1064, 1278, 1689, 2286, 2578, 2638, 3279
HpySE526I	ACGT	3 cut(s)	484, 1026, 1650
Hsp92I	GRCGYC	1 cut(s)	1776
Hsp92II	CATG	9 cut(s)	448, 1427, 1477, 1799, 1893, 2557, 2717, 3296, 3363
HspAI	GCGC	4 cut(s)	1776, 2201, 2489, 2528
KasI	GGCGCC	1 cut(s)	1775
KpnI	GGTACC	1 cut(s)	274
KroI	GCCGGC	1 cut(s)	1596
KroNI	GCCGGC	1 cut(s)	1598
Ksp22I	TGATCA	1 cut(s)	672
KspAI	GTTAAC	1 cut(s)	1642
LguI	GCTCTTC	1 cut(s)	1698
LmnI	GCTCC	4 cut(s)	203, 211, 2410, 2507
MaeII	ACGT	3 cut(s)	484, 1026, 1650
MaeIII	GTNAC	5 cut(s)	741, 1022, 1093, 2876, 2941
MfeI	CAATTG	4 cut(s)	1209, 1494, 1962, 2328
MflI	RGATCY	2 cut(s)	662, 936
MhlI	GDGCHC	4 cut(s)	208, 1270, 2022, 3139
MlsI	TGGCCA	3 cut(s)	264, 449, 731
MluNI	TGGCCA	3 cut(s)	264, 449, 731
Mly113I	GGCGCC	1 cut(s)	1776
MlyI	GAGTC	5 cut(s)	450, 1289, 1874, 2612, 2630
MmeI	TCCRAC	2 cut(s)	2646, 2785
Mox20I	TGGCCA	3 cut(s)	264, 449, 731
Mph1103I	ATGCAT	2 cut(s)	775, 3331
MroNI	GCCGGC	1 cut(s)	1596
MroXI	GAANNNNTTC	1 cut(s)	2900
MscI	TGGCCA	3 cut(s)	264, 449, 731
MslI	CAYNNNNRTG	2 cut(s)	1844, 1940
Msp20I	TGGCCA	3 cut(s)	264, 449, 731
MspA1I	CMGCKG	1 cut(s)	1790
MspI	CCGG	3 cut(s)	274, 532, 1597
MspR9I	CCNGG	3 cut(s)	9, 992, 1142
MunI	CAATTG	4 cut(s)	1209, 1494, 1962, 2328
Mva1269I	GAATGC	3 cut(s)	387, 414, 2337
MvaI	CCWGG	3 cut(s)	9, 992, 1142
MvnI	CGCG	2 cut(s)	477, 1873
NaeI	GCCGGC	1 cut(s)	1598
NarI	GGCGCC	1 cut(s)	1776
NdeI	CATATG	1 cut(s)	653
NgoMIV	GCCGGC	1 cut(s)	1596
NlaIII	CATG	9 cut(s)	448, 1427, 1477, 1799, 1893, 2557, 2717, 3296, 3363
NlaIV	GGNNCC	8 cut(s)	6, 272, 664, 1268, 1491, 1777, 2065, 2613
NmuCI	GTSAC	2 cut(s)	741, 1022
NsbI	TGCGCA	1 cut(s)	2529
NsiI	ATGCAT	2 cut(s)	775, 3331
NspI	RCATGY	2 cut(s)	1477, 2717
NspV	TTCGAA	1 cut(s)	2341
PaeI	GCATGC	1 cut(s)	1477
PaeR7I	CTCGAG	1 cut(s)	2708
PagI	TCATGA	1 cut(s)	1423
PasI	CCCWGGG	1 cut(s)	1141
PceI	AGGCCT	1 cut(s)	990
PciSI	GCTCTTC	1 cut(s)	1698
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PctI	GAATGC	3 cut(s)	387, 414, 2337
PdiI	GCCGGC	1 cut(s)	1598
PdmI	GAANNNNTTC	1 cut(s)	2900
PflMI	CCANNNNNTGG	1 cut(s)	1019
PinAI	ACCGGT	1 cut(s)	273
PleI	GAGTC	5 cut(s)	449, 1288, 1874, 2612, 2630
PluTI	GGCGCC	1 cut(s)	1779
PpsI	GAGTC	5 cut(s)	449, 1288, 1874, 2612, 2630
Ppu21I	YACGTR	1 cut(s)	1651
PpuMI	RGGWCCY	1 cut(s)	2612
PshAI	GACNNNNGTC	1 cut(s)	173
PshBI	ATTAAT	2 cut(s)	113, 1316
PsiI	TTATAA	1 cut(s)	2207
Psp124BI	GAGCTC	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	2612
Psp6I	CCWGG	3 cut(s)	7, 990, 1140
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	7, 990, 1140
PspN4I	GGNNCC	8 cut(s)	6, 272, 664, 1268, 1491, 1777, 2065, 2613
PspOMI	GGGCCC	1 cut(s)	1266
PspPI	GGNCC	3 cut(s)	1266, 1267, 2612
PspPPI	RGGWCCY	1 cut(s)	2612
PsrI	GAACNNNNNNTAC	2 cut(s)	3147, 3179
PstI	CTGCAG	1 cut(s)	1789
PstNI	CAGNNNCTG	1 cut(s)	1019
PsuI	RGATCY	2 cut(s)	662, 936
PvuII	CAGCTG	1 cut(s)	1790
RseI	CAYNNNNRTG	2 cut(s)	1844, 1940
SacI	GAGCTC	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	1698
Sau96I	GGNCC	3 cut(s)	1266, 1267, 2612
ScaI	AGTACT	1 cut(s)	2247
SchI	GAGTC	5 cut(s)	450, 1289, 1874, 2612, 2630
ScrFI	CCNGG	3 cut(s)	9, 992, 1142
SduI	GDGCHC	4 cut(s)	208, 1270, 2022, 3139
SfcI	CTRYAG	4 cut(s)	120, 226, 1785, 2535
SfoI	GGCGCC	1 cut(s)	1777
Sfr274I	CTCGAG	1 cut(s)	2708
SfuI	TTCGAA	1 cut(s)	2341
SinI	GGWCC	1 cut(s)	2612
SlaI	CTCGAG	1 cut(s)	2708
SmiMI	CAYNNNNRTG	2 cut(s)	1844, 1940
SmlI	CTYRAG	3 cut(s)	809, 2708, 3009
SmoI	CTYRAG	3 cut(s)	809, 2708, 3009
SpeI	ACTAGT	1 cut(s)	1508
SphI	GCATGC	1 cut(s)	1477
SseBI	AGGCCT	1 cut(s)	990
SsiI	CCGC	6 cut(s)	330, 477, 494, 696, 969, 1871
SspDI	GGCGCC	1 cut(s)	1775
SstI	GAGCTC	1 cut(s)	208
StuI	AGGCCT	1 cut(s)	990
StyD4I	CCNGG	3 cut(s)	7, 990, 1140
StyI	CCWWGG	3 cut(s)	369, 396, 1678
TaiI	ACGT	3 cut(s)	487, 1029, 1653
TaqI	TCGA	8 cut(s)	888, 1044, 1251, 2341, 2648, 2687, 2709, 3120
TatI	WGTACW	4 cut(s)	1660, 2245, 2480, 3163
TauI	GCSGC	2 cut(s)	699, 1873
TscAI	CASTG	8 cut(s)	457, 739, 987, 1392, 1932, 1947, 2838, 3319
TseFI	GTSAC	2 cut(s)	741, 1022
Tsp45I	GTSAC	2 cut(s)	741, 1022
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	8 cut(s)	457, 739, 987, 1392, 1932, 1947, 2838, 3319
Van91I	CCANNNNNTGG	1 cut(s)	1019
VneI	GTGCAC	2 cut(s)	2018, 3135
VpaK11BI	GGWCC	1 cut(s)	2612
VspI	ATTAAT	2 cut(s)	113, 1316
XapI	RAATTY	7 cut(s)	249, 1054, 1239, 1948, 1989, 2053, 2258
XceI	RCATGY	2 cut(s)	1477, 2717
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1729
XhoI	CTCGAG	1 cut(s)	2708
XmnI	GAANNNNTTC	1 cut(s)	2900
ZrmI	AGTACT	1 cut(s)	2247
Zsp2I	ATGCAT	2 cut(s)	775, 3331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.