Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001944

Physical Location & Seq

Genomic Coordinates Reverse (-)

8964541 .. 8970511

Gene Structure 5971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3192 bp

ATGGACGGAGGAGGAGGAGATGGAGATGGAAGAGCAAAAGTTAACGATCCAGACAAGCAGAAGGTCCCGTTCTACAAGCTGTTTCTGTTCGCAGACCAATATGACGTGGGGTTGATGATCGTTGGGAGTATCTGTGCCATCGGAAACGGGCTGTCGCAGCCGTTCATGACGCTCATCTTCGGCAGTCTTATCAATACTTTCGGACATACTGACCGGGCTCATATCGTCCCCATGATTTCTAAGGTGTCTCTAAAATTTGTGTACTTGGGCATTGGTACTGGCATTGCTGCATTTCTACAGGTATCATGTTGGATGGTAACTGGGGAAAGACAGGCCACTCGAATTCGAAGCTTGTACTTGAAAGCAATTTTAAGACAGGACATTGGATATTTTGACACCGAAACTAACACTGGAGAGATCATTGGCAGAATGTCAGGGGACACAATTCTCATTCAAGATGCCATGGGAGAAAAGGTGGGGAAGTTCATTCAACTCCTTTCAACTTTTGTTGGCGGTTTTGTAATTGCTTTGGTCAAAGGATGGCTTCTTACCCTGGTGTTACTGTCATGTATTCCCGCTATTGTCTTTGCTGGTGGAATCATGGCCATTATTGTTTCCAAAATGTCAACACGTGGACAGCGTGCTTATGCGGAAGCTGGCAGTATAGTAGAACAAACAGTTGGAGCCATTCGAACAGTTGCATCTTTTACCGGAGAGAAGCAAGCGATAGAAAAATATAACAAGAAGCTAAAGGTTGCCTACAATAGTACAGTTCAACAAGGACTTGCCACAGGAGTTGGACTTGGTACGTTCATACTTATTGTCTTTGGCACTTATGGACTTGCCATATGGTATGGATCCAAAATGATCATCGAAAAAGGATATAATGGAGGCCAAGTCATCAATGTTATATTTGCAATAATGACGGGTGGAATGTGCCTGGGCCAGACATCACCGTCTTTGAATGCATTTGCAGCAGGGACAGCTGCTGCATACAAAATGCTCGAGACTATCAAACGAACGCCGAAGATTGATCCTTATGATACCTCTGGAGTTGTATTGGACGATATTAAAGGAGAGGTGGAGCTCAAAGACGTCCATTTCAGGTACCCTGCCAGGCCGGATGTGCAGATTTTTGCGGGATTCTCGTTGCATGTTCCGAGTGGCACAACGACTGCTTTGGTTGGGCAGAGTGGAAGTGGGAAGTCAACAGTGATAGGCTTGGTAGAGAGGTTTTATGATCCAGAAGCTGGTGAAGTACTTATAGATGGTGTCAATTTGAAGAAGTTGCATCTTAGATCGATAAGGGAGAAGATTGGGCTTGTAAGTCAAGAGCCAAATCTTTTTACTACAACAATAAGGGAGAACATAGCATATGGGAAGGAAAATGCAACTCAAGAAGAGATTAGAAGAGCTATTGAGCTCGCAAATGCAGCAAAGTTTATTGACAAGTTGCCTCAGGGGCTCGACACAATGGTAGGTGAGCATGGAACATCGCTATCGGGTGGACAAAAGCAAAGAATTGCAATTGCAAGAGCCATTTTAAAGAACCCTAGAATTCTACTTCTGGACGAAGCAACAAGCGCCTTGGATGCTGAGTCGGAGCGAATTGTTCAAGATGCACTGGTGAGATTGATGTCAAATAGAACGACTATAGTTGTTGCACATCGCTTAACAACGATTAGGAATGCTGATGCAATAGCTGTGGTGCATAAAGGGAAAATTGTTGAAATAGGAACTCATGATGACTTGACCCAAAACCCAGAAGGAGCGTACAGCCAACTAATCCGCCTGCAAGAAAGAGCTAAAGAAAAAGGTGCAGAGCCCTCTGATCCAGATAATGGTTTGGATATAGATAGGACAATGAGTAGATCTGGGAGCCAGAGACTTTCAGCAGTGAGATCTTTAAGCAAAGGTTCATCAGGTAGTCGGCGCTCATTCACTATTACTAGCTTTGGTGTTCCTGCTCCAGTTAATTGTGAAGTACAAGTAGAAGAAGAAGATGAGGAGAACCGTGTGAAAACGAAGGTTGATCCGGAGCAACGCAAAAAAGTTTCCATCAAAAGGCTGGCCTATTTGAATAAACCTGAGCTTCCAGTTTTGCTGCTTGGATCTATTGCTGCAGCAGGTCATGGAGTGATTTTTCCTGTCTTCGGCTTACTACTCTCAAAAGCCATCAAGATGTTCTATGAGCCGCATAATGAGCTGCGAAAAGACTCCAAAGTTTGGGCAGGAGTGTATGTTGGTATAGGTTTCTTTGGGTTGTTTGTTATTCCAGGGCAAAATTTCTTCTTTGGAATTGCAGGTGGGAAGCTGATAGAGCGAATTCGTGCCTTGACATTCCAAAAAGTTGTACACCAGCAAATTAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCTATTGGTGCAAGGTTGTCTTCTGATGCTTCAACTGTGAAGGCTCTTGTTGGTGACGCATTAGCCTTGATTGCTCAGAACATAGCAACAATCATAGCAGGACTGATTATAGGTTTCGTAGCTAACTGGAGACTAGCGCTTATAATTATAGCTGTGTCGCCATTGTTGATTGGGCAAGGAATACTCCAAACAAAATTTCTTAAAGGGTTTAGTGCCGATGCCAAGGTTATGTATGAAGAAGCAAGTCAAGTGGCAAATGATGCAATTGGTAGCATTCGAACTGTTGCATCATTTTGTTCTGAAAAGAAGGTGATGGATACGTATGAGAAGAAGTGTGAAGGTCCAATGAAACAAGGAGTACGATTGGGAGTAGTAAGTGGTACAGGTTTTGGCGCTTCATTTGTAGTAATGTTCTTCACAAATGCATTAATTTTCTATGTTGGAGCTCATCTTGTGAAAAATGGGCAAGCCACATTTGAACAAGTATTCAGGGTGTTCTTTGCTCTAACTATTTCAGCGGTGGGGGTTTCTCAATCTACTGGCATGGCTCCTGACTCCAATAAAGCCAAGGACTCAGCAGCTTCAATATTTCAAATTCTTGATAGCAAGCCTAAGATCGATTCAAGCAGCGATGATGGCATAACACTACCGCGCATTACTGGAGAAATTGATCTTGACCATGTCAGCTTCAAATACCCCACAAGACCAGATGTGCAGATATTCAGGGACATTTGTTTGAAAATCCCTTCTGGAAAGGTTAGTACAAACCACCACCACTCAGTTTATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1063

Amino Acids

114.92

Weight (kDa)

9.03

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	39 - 310	2.2e-61	ABC transporter transmembrane region
ABC_tran	PF00005	381 - 528	3e-33	ABC transporter
ABC_membrane	PF00664	702 - 973	7e-60	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46540
fragaria_vesca	FvH4_3g06540 FvH4_6g19120 FvH4_6g19362 FvH4_7g10050
malus_domestica	MD05G1292400.v1.1 MD10G1268300.v1.1 MD10G1268400.v1.1
prunus_persica	Prupe.4G073000_v2.0.a1
pyrus_communis	pycom05g26870 pycom10g22450 pycom10g22470
rosa_chinensis	RchiOBHm_Chr3g0474221 RchiOBHm_Chr3g0474231 RchiOBHm_Chr3g0479341 RchiOBHm_Chr3g0479351 RchiOBHm_Chr5g0012641
rosa_laevigata	RLG00000023583 RLG00000023903 RLG00000023940 RLG00000031931 RLG00000031945
rosa_multiflora	Rmu_sc0015051.1_g000005 Rmu_sc0024687.1_g000002 Rmu_sc0034046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063960 Rroxscaffold_6G00402390 Rroxscaffold_6G00407420
rosa_rugosa	Rorug01G0315600 Rorug02G0062500 Rorug03G0139600 Rorug05G0003300 Rorug05G0003400 Rorug05G0313000
rosa_samantha	Rh3AG190100 Rh3AG225500 Rh3AG225700 Rh3BG219300 Rh4DG026100 Rh5AG097000 Rh5BG093600 Rh5CG106000 Rh5DG092700
rosa_wichuraiana	Rw3G017340 Rw5G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2543
AarI	CACCTGC	1 cut(s)	2294
AasI	GACNNNNNNGTC	1 cut(s)	955
AatII	GACGTC	1 cut(s)	1098
Acc36I	ACCTGC	2 cut(s)	2117, 2294
Acc65I	GGTACC	1 cut(s)	1107
AccB1I	GGYRCC	1 cut(s)	1107
AccB7I	CCANNNNNTGG	3 cut(s)	1250, 1841, 2226
AccII	CGCG	1 cut(s)	3052
AccIII	TCCGGA	1 cut(s)	2035
AciI	CCGC	8 cut(s)	513, 576, 650, 1139, 1789, 2195, 2918, 3050
AclWI	GGATC	9 cut(s)	41, 852, 865, 1028, 1235, 1826, 2027, 2119, 2375
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	8 cut(s)	254, 342, 1557, 2284, 2325, 2389, 2594, 2994
AcvI	CACGTG	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	1095
AfeI	AGCGCT	1 cut(s)	2538
AfiI	CCNNNNNNNGG	5 cut(s)	1250, 1841, 2064, 2153, 2226
AflIII	ACRYGT	1 cut(s)	629
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	4 cut(s)	552, 939, 1115, 2275
AjuI	GAANNNNNNNTTGG	4 cut(s)	663, 695, 2580, 2612
Alw21I	GWGCWC	3 cut(s)	1089, 1425, 2848
Alw26I	GTCTC	4 cut(s)	252, 1001, 1879, 2524
AlwI	GGATC	9 cut(s)	41, 852, 865, 1028, 1235, 1826, 2027, 2119, 2375
AlwNI	CAGNNNCTG	2 cut(s)	989, 1250
Ama87I	CYCGRG	1 cut(s)	1004
Aor13HI	TCCGGA	1 cut(s)	2035
Aor51HI	AGCGCT	1 cut(s)	2538
AoxI	GGCC	6 cut(s)	333, 603, 892, 943, 1118, 2070
ApoI	RAATTY	8 cut(s)	254, 342, 1557, 2284, 2325, 2389, 2594, 2994
AseI	ATTAAT	1 cut(s)	2828
Asp718I	GGTACC	1 cut(s)	1107
AspLEI	GCGC	5 cut(s)	1586, 1935, 2539, 2795, 3054
AspS9I	GGNCC	3 cut(s)	64, 943, 2741
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	6 cut(s)	945, 1265, 1493, 1639, 2465, 2722
AsuII	TTCGAA	3 cut(s)	346, 691, 2677
AvaI	CYCGRG	1 cut(s)	1004
AvaII	GGWCC	2 cut(s)	64, 2741
AxyI	CCTNAGG	1 cut(s)	1458
BalI	TGGCCA	1 cut(s)	605
BamHI	GGATCC	1 cut(s)	857
BanI	GGYRCC	1 cut(s)	1107
BanII	GRGCYC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
BbrPI	CACGTG	1 cut(s)	632
BbsI	GAAGAC	2 cut(s)	2143, 2412
Bbv12I	GWGCWC	3 cut(s)	1089, 1425, 2848
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	4 cut(s)	554, 941, 1117, 2277
BciVI	GTATCC	1 cut(s)	2710
BclI	TGATCA	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	4 cut(s)	252, 1001, 1879, 2524
BfaI	CTAG	3 cut(s)	1554, 1950, 2534
BfmI	CTRYAG	3 cut(s)	296, 1653, 2121
BfoI	RGCGCY	4 cut(s)	1587, 1936, 2540, 2796
BfuAI	ACCTGC	2 cut(s)	2117, 2294
BfuI	GTATCC	1 cut(s)	2710
BglI	GCCNNNNNGGC	1 cut(s)	1462
BglII	AGATCT	2 cut(s)	1871, 1901
BmcAI	AGTACT	1 cut(s)	1260
Bme1390I	CCNGG	5 cut(s)	215, 554, 941, 1117, 2277
Bme18I	GGWCC	2 cut(s)	64, 2741
BmeT110I	CYCGRG	1 cut(s)	1004
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	64, 943, 2741
BmiI	GGNNCC	6 cut(s)	66, 685, 859, 1109, 1880, 2949
BmrFI	CCNGG	5 cut(s)	215, 554, 941, 1117, 2277
BmrI	ACTGGG	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	330
BpiI	GAAGAC	2 cut(s)	2143, 2412
BpmI	CTGGAG	5 cut(s)	432, 1071, 1953, 2548, 3081
Bpu10I	CCTNAGC	1 cut(s)	2088
Bpu14I	TTCGAA	3 cut(s)	346, 691, 2677
BpuEI	CTTGAG	1 cut(s)	1380
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	2 cut(s)	1301, 3018
BsaAI	YACGTR	2 cut(s)	632, 2721
BsaHI	GRCGYC	1 cut(s)	1095
BsaJI	CCNNGG	7 cut(s)	462, 552, 940, 1587, 2276, 2622, 2967
BsaWI	WCCGGW	2 cut(s)	710, 2035
BsaXI	ACNNNNNCTCC	8 cut(s)	118, 148, 459, 489, 882, 912, 2226, 2256
Bsc4I	CCNNNNNNNGG	5 cut(s)	1250, 1841, 2064, 2153, 2226
Bse1I	ACTGG	9 cut(s)	283, 325, 415, 1629, 1970, 2096, 2531, 2944, 3064
Bse21I	CCTNAGG	1 cut(s)	1458
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	2035
BseBI	CCWGG	4 cut(s)	554, 941, 1117, 2277
BseCI	ATCGAT	2 cut(s)	1301, 3018
BseDI	CCNNGG	7 cut(s)	462, 552, 940, 1587, 2276, 2622, 2967
BseGI	GGATG	4 cut(s)	318, 545, 1129, 1597
BseLI	CCNNNNNNNGG	5 cut(s)	1250, 1841, 2064, 2153, 2226
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	6 cut(s)	1472, 1587, 2079, 2489, 2988, 3192
BseNI	ACTGG	9 cut(s)	283, 325, 415, 1629, 1970, 2096, 2531, 2944, 3064
BseRI	GAGGAG	4 cut(s)	24, 27, 30, 2021
BsgI	GTGCAG	3 cut(s)	1148, 1839, 3134
Bsh1236I	CGCG	1 cut(s)	3052
BshFI	GGCC	6 cut(s)	335, 605, 894, 945, 1120, 2072
BshNI	GGYRCC	1 cut(s)	1107
BshVI	ATCGAT	2 cut(s)	1301, 3018
BsiHKAI	GWGCWC	3 cut(s)	1089, 1425, 2848
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	4 cut(s)	214, 711, 1121, 2036
BslFI	GGGAC	5 cut(s)	50, 212, 452, 994, 3140
BslI	CCNNNNNNNGG	5 cut(s)	1250, 1841, 2064, 2153, 2226
BsmAI	GTCTC	4 cut(s)	252, 1001, 1879, 2524
BsmFI	GGGAC	5 cut(s)	50, 212, 452, 994, 3140
BsmI	GAATGC	3 cut(s)	970, 1693, 2673
BsnI	GGCC	6 cut(s)	335, 605, 894, 945, 1120, 2072
BsoBI	CYCGRG	1 cut(s)	1004
Bsp119I	TTCGAA	3 cut(s)	346, 691, 2677
Bsp1286I	GDGCHC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
Bsp13I	TCCGGA	1 cut(s)	2035
Bsp1407I	TGTACA	1 cut(s)	2353
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	8 cut(s)	513, 576, 650, 1139, 1789, 2195, 2918, 3050
BspANI	GGCC	6 cut(s)	335, 605, 894, 945, 1120, 2072
BspCNI	CTCAG	6 cut(s)	1471, 1588, 2080, 2488, 2987, 3191
BspDI	ATCGAT	2 cut(s)	1301, 3018
BspEI	TCCGGA	1 cut(s)	2035
BspFNI	CGCG	1 cut(s)	3052
BspHI	TCATGA	2 cut(s)	165, 1741
BspLI	GGNNCC	6 cut(s)	66, 685, 859, 1109, 1880, 2949
BspMAI	CTGCAG	1 cut(s)	2125
BspMI	ACCTGC	2 cut(s)	2117, 2294
BspPI	GGATC	9 cut(s)	41, 852, 865, 1028, 1235, 1826, 2027, 2119, 2375
BspQI	GCTCTTC	2 cut(s)	25, 1405
BspT104I	TTCGAA	3 cut(s)	346, 691, 2677
BspT107I	GGYRCC	1 cut(s)	1107
BsrDI	GCAATG	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	2353
BsrI	ACTGG	9 cut(s)	283, 325, 415, 1629, 1970, 2096, 2531, 2944, 3064
BssECI	CCNNGG	7 cut(s)	462, 552, 940, 1587, 2276, 2622, 2967
BssNI	GRCGYC	1 cut(s)	1095
BssT1I	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
Bst2UI	CCWGG	4 cut(s)	554, 941, 1117, 2277
Bst4CI	ACNGT	9 cut(s)	564, 679, 697, 772, 957, 1213, 2015, 2437, 2683
Bst6I	CTCTTC	3 cut(s)	25, 1395, 1405
BstACI	GRCGYC	1 cut(s)	1095
BstAPI	GCANNNNNTGC	1 cut(s)	2660
BstAUI	TGTACA	1 cut(s)	2353
BstBAI	YACGTR	2 cut(s)	632, 2721
BstBI	TTCGAA	3 cut(s)	346, 691, 2677
BstC8I	GCNNGC	8 cut(s)	642, 658, 723, 1425, 1793, 2070, 2868, 3008
BstDEI	CTNAG	9 cut(s)	240, 1295, 1458, 1596, 2088, 2475, 2974, 3012, 3178
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	4 cut(s)	318, 545, 1129, 1597
BstFNI	CGCG	1 cut(s)	3052
BstH2I	RGCGCY	4 cut(s)	1587, 1936, 2540, 2796
BstHHI	GCGC	5 cut(s)	1586, 1935, 2539, 2795, 3054
BstMAI	GTCTC	4 cut(s)	252, 1001, 1879, 2524
BstNI	CCWGG	4 cut(s)	554, 941, 1117, 2277
BstNSI	RCATGY	1 cut(s)	1157
BstSCI	CCNGG	5 cut(s)	213, 552, 939, 1115, 2275
BstSFI	CTRYAG	3 cut(s)	296, 1653, 2121
BstSNI	TACGTA	1 cut(s)	2721
BstUI	CGCG	1 cut(s)	3052
BstV2I	GAAGAC	2 cut(s)	2143, 2412
BstX2I	RGATCY	4 cut(s)	857, 1871, 1901, 2111
BstYI	RGATCY	4 cut(s)	857, 1871, 1901, 2111
Bsu15I	ATCGAT	2 cut(s)	1301, 3018
Bsu36I	CCTNAGG	1 cut(s)	1458
BsuI	GTATCC	1 cut(s)	2710
BsuRI	GGCC	6 cut(s)	335, 605, 894, 945, 1120, 2072
BsuTUI	ATCGAT	2 cut(s)	1301, 3018
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	3 cut(s)	1479, 1652, 3045
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	4 cut(s)	318, 545, 1129, 1597
BtsI	GCAGTG	1 cut(s)	1902
BtsIMutI	CAGTG	4 cut(s)	408, 1218, 1622, 1902
BveI	ACCTGC	2 cut(s)	2117, 2294
Cac8I	GCNNGC	8 cut(s)	642, 658, 723, 1425, 1793, 2070, 2868, 3008
CaiI	CAGNNNCTG	2 cut(s)	989, 1250
CciI	TCATGA	2 cut(s)	165, 1741
CfoI	GCGC	5 cut(s)	1586, 1935, 2539, 2795, 3054
Cfr13I	GGNCC	3 cut(s)	64, 943, 2741
ClaI	ATCGAT	2 cut(s)	1301, 3018
CseI	GACGC	2 cut(s)	178, 2465
CspCI	CAANNNNNGTGG	6 cut(s)	778, 813, 1686, 1721, 2631, 2666
DdeI	CTNAG	9 cut(s)	240, 1295, 1458, 1596, 2088, 2475, 2974, 3012, 3178
DraI	TTTAAA	1 cut(s)	1545
DrdI	GACNNNNNNGTC	1 cut(s)	955
DseDI	GACNNNNNNGTC	1 cut(s)	955
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	3 cut(s)	25, 1395, 1405
EarI	CTCTTC	3 cut(s)	25, 1395, 1405
EciI	GGCGGA	1 cut(s)	1778
Ecl136II	GAGCTC	3 cut(s)	1087, 1423, 2846
Eco105I	TACGTA	1 cut(s)	2721
Eco130I	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
Eco24I	GRGCYC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
Eco47I	GGWCC	2 cut(s)	64, 2741
Eco47III	AGCGCT	1 cut(s)	2538
Eco53kI	GAGCTC	3 cut(s)	1087, 1423, 2846
Eco72I	CACGTG	1 cut(s)	632
Eco81I	CCTNAGG	1 cut(s)	1458
Eco88I	CYCGRG	1 cut(s)	1004
EcoICRI	GAGCTC	3 cut(s)	1087, 1423, 2846
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	3 cut(s)	342, 1557, 2325
EcoRII	CCWGG	4 cut(s)	552, 939, 1115, 2275
EcoT14I	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
EcoT22I	ATGCAT	2 cut(s)	970, 2827
EcoT38I	GRGCYC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
ErhI	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
FalI	AAGNNNNNCTT	4 cut(s)	528, 560, 2404, 2436
FaqI	GGGAC	5 cut(s)	50, 212, 452, 994, 3140
FauI	CCCGC	2 cut(s)	583, 1132
FauNDI	CATATG	2 cut(s)	848, 1375
FbaI	TGATCA	1 cut(s)	867
FokI	GGATG	4 cut(s)	325, 552, 1136, 1604
FriOI	GRGCYC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
FspBI	CTAG	3 cut(s)	1554, 1950, 2534
GlaI	GCGC	5 cut(s)	1585, 1934, 2538, 2794, 3053
GsuI	CTGGAG	5 cut(s)	432, 1071, 1953, 2548, 3081
HaeII	RGCGCY	4 cut(s)	1587, 1936, 2540, 2796
HaeIII	GGCC	6 cut(s)	335, 605, 894, 945, 1120, 2072
HapII	CCGG	4 cut(s)	214, 711, 1121, 2036
HgaI	GACGC	2 cut(s)	178, 2465
HhaI	GCGC	5 cut(s)	1586, 1935, 2539, 2795, 3054
Hin1I	GRCGYC	1 cut(s)	1095
Hin6I	GCGC	5 cut(s)	1584, 1933, 2537, 2793, 3052
HinP1I	GCGC	5 cut(s)	1584, 1933, 2537, 2793, 3052
HincII	GTYRAC	3 cut(s)	43, 627, 1209
HindII	GTYRAC	3 cut(s)	43, 627, 1209
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	7 cut(s)	597, 1143, 1598, 2216, 2954, 2972, 3020
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	4 cut(s)	214, 711, 1121, 2036
HphI	GGTGA	6 cut(s)	945, 1265, 1493, 1639, 2465, 2722
Hpy166II	GTNNAC	7 cut(s)	43, 262, 627, 635, 1209, 1508, 2356
Hpy188I	TCNGA	8 cut(s)	143, 203, 1161, 1603, 1831, 2425, 2478, 2701
Hpy8I	GTNNAC	7 cut(s)	43, 262, 627, 635, 1209, 1508, 2356
HpyAV	CCTTC	8 cut(s)	55, 1375, 1760, 2020, 2434, 2701, 2732, 3156
HpyCH4III	ACNGT	9 cut(s)	564, 679, 697, 772, 957, 1213, 2015, 2437, 2683
HpyCH4IV	ACGT	5 cut(s)	105, 631, 809, 1095, 2720
HpyF3I	CTNAG	9 cut(s)	240, 1295, 1458, 1596, 2088, 2475, 2974, 3012, 3178
HpySE526I	ACGT	5 cut(s)	105, 631, 809, 1095, 2720
Hsp92I	GRCGYC	1 cut(s)	1095
HspAI	GCGC	5 cut(s)	1584, 1933, 2537, 2793, 3052
Kpn2I	TCCGGA	1 cut(s)	2035
KpnI	GGTACC	1 cut(s)	1111
Ksp22I	TGATCA	1 cut(s)	867
KspAI	GTTAAC	1 cut(s)	43
LguI	GCTCTTC	2 cut(s)	25, 1405
LmnI	GCTCC	9 cut(s)	683, 1084, 1603, 1769, 1878, 1972, 2038, 2843, 2953
MaeI	CTAG	3 cut(s)	1554, 1950, 2534
MaeII	ACGT	5 cut(s)	105, 631, 809, 1095, 2720
MaeIII	GTNAC	3 cut(s)	316, 558, 2453
MfeI	CAATTG	2 cut(s)	1527, 2664
MflI	RGATCY	4 cut(s)	857, 1871, 1901, 2111
MhlI	GDGCHC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
MlsI	TGGCCA	1 cut(s)	605
MluNI	TGGCCA	1 cut(s)	605
MlyI	GAGTC	4 cut(s)	1607, 2210, 2948, 2966
MmeI	TCCRAC	5 cut(s)	290, 661, 778, 1581, 2821
MnlI	CCTC	9 cut(s)	5, 8, 884, 1057, 1072, 1224, 1467, 1837, 1999
Mox20I	TGGCCA	1 cut(s)	605
Mph1103I	ATGCAT	2 cut(s)	970, 2827
MroI	TCCGGA	1 cut(s)	2035
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	9 cut(s)	42, 371, 1071, 1544, 1673, 1907, 1974, 2601, 2828
MslI	CAYNNNNRTG	1 cut(s)	2180
Msp20I	TGGCCA	1 cut(s)	605
MspA1I	CMGCKG	2 cut(s)	986, 2918
MspI	CCGG	4 cut(s)	214, 711, 1121, 2036
MspR9I	CCNGG	5 cut(s)	215, 554, 941, 1117, 2277
MunI	CAATTG	2 cut(s)	1527, 2664
Mva1269I	GAATGC	3 cut(s)	970, 1693, 2673
MvaI	CCWGG	4 cut(s)	554, 941, 1117, 2277
MvnI	CGCG	1 cut(s)	3052
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	462
NdeI	CATATG	2 cut(s)	848, 1375
NlaIV	GGNNCC	6 cut(s)	66, 685, 859, 1109, 1880, 2949
NmuCI	GTSAC	1 cut(s)	2453
NsiI	ATGCAT	2 cut(s)	970, 2827
NspI	RCATGY	1 cut(s)	1157
NspV	TTCGAA	3 cut(s)	346, 691, 2677
PaeR7I	CTCGAG	1 cut(s)	1004
PagI	TCATGA	2 cut(s)	165, 1741
PaqCI	CACCTGC	1 cut(s)	2294
PciSI	GCTCTTC	2 cut(s)	25, 1405
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	3 cut(s)	970, 1693, 2673
PfeI	GAWTC	3 cut(s)	597, 1143, 3020
PflFI	GACNNNGTC	1 cut(s)	3080
PflMI	CCANNNNNTGG	3 cut(s)	1250, 1841, 2226
PleI	GAGTC	4 cut(s)	1606, 2210, 2948, 2966
PmaCI	CACGTG	1 cut(s)	632
PmlI	CACGTG	1 cut(s)	632
PpsI	GAGTC	4 cut(s)	1606, 2210, 2948, 2966
Ppu21I	YACGTR	2 cut(s)	632, 2721
PpuMI	RGGWCCY	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	2828
PsiI	TTATAA	1 cut(s)	2543
Psp124BI	GAGCTC	3 cut(s)	1089, 1425, 2848
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	4 cut(s)	552, 939, 1115, 2275
PspCI	CACGTG	1 cut(s)	632
PspGI	CCWGG	4 cut(s)	552, 939, 1115, 2275
PspN4I	GGNNCC	6 cut(s)	66, 685, 859, 1109, 1880, 2949
PspPI	GGNCC	3 cut(s)	64, 943, 2741
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	2125
PstNI	CAGNNNCTG	2 cut(s)	989, 1250
PsuI	RGATCY	4 cut(s)	857, 1871, 1901, 2111
PsyI	GACNNNGTC	1 cut(s)	3080
PvuII	CAGCTG	1 cut(s)	986
RseI	CAYNNNNRTG	1 cut(s)	2180
SacI	GAGCTC	3 cut(s)	1089, 1425, 2848
SapI	GCTCTTC	2 cut(s)	25, 1405
SaqAI	TTAA	9 cut(s)	42, 371, 1071, 1544, 1673, 1907, 1974, 2601, 2828
Sau96I	GGNCC	3 cut(s)	64, 943, 2741
ScaI	AGTACT	1 cut(s)	1260
SchI	GAGTC	4 cut(s)	1607, 2210, 2948, 2966
ScrFI	CCNGG	5 cut(s)	215, 554, 941, 1117, 2277
SduI	GDGCHC	6 cut(s)	220, 1089, 1425, 1467, 1827, 2848
SfcI	CTRYAG	3 cut(s)	296, 1653, 2121
Sfr274I	CTCGAG	1 cut(s)	1004
SfuI	TTCGAA	3 cut(s)	346, 691, 2677
SinI	GGWCC	2 cut(s)	64, 2741
SlaI	CTCGAG	1 cut(s)	1004
SmiMI	CAYNNNNRTG	1 cut(s)	2180
SmlI	CTYRAG	2 cut(s)	1004, 1395
SmoI	CTYRAG	2 cut(s)	1004, 1395
SnaBI	TACGTA	1 cut(s)	2721
SsiI	CCGC	8 cut(s)	513, 576, 650, 1139, 1789, 2195, 2918, 3050
SspI	AATATT	1 cut(s)	2988
SspMI	CTAG	3 cut(s)	1554, 1950, 2534
SstI	GAGCTC	3 cut(s)	1089, 1425, 2848
StyD4I	CCNGG	5 cut(s)	213, 552, 939, 1115, 2275
StyI	CCWWGG	4 cut(s)	462, 1587, 2622, 2967
TaaI	ACNGT	9 cut(s)	564, 679, 697, 772, 957, 1213, 2015, 2437, 2683
TaiI	ACGT	5 cut(s)	108, 634, 812, 1098, 2723
TaqI	TCGA	9 cut(s)	340, 346, 691, 873, 1005, 1301, 1467, 2677, 3018
TatI	WGTACW	7 cut(s)	261, 354, 767, 1258, 1984, 2353, 3161
TauI	GCSGC	1 cut(s)	2197
TfiI	GAWTC	3 cut(s)	597, 1143, 3020
Tru1I	TTAA	9 cut(s)	42, 371, 1071, 1544, 1673, 1907, 1974, 2601, 2828
Tru9I	TTAA	9 cut(s)	42, 371, 1071, 1544, 1673, 1907, 1974, 2601, 2828
TscAI	CASTG	4 cut(s)	415, 1218, 1629, 1902
TseFI	GTSAC	1 cut(s)	2453
Tsp45I	GTSAC	1 cut(s)	2453
TspDTI	ATGAA	7 cut(s)	154, 475, 802, 1908, 2649, 2762, 2787
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	4 cut(s)	415, 1218, 1629, 1902
Tth111I	GACNNNGTC	1 cut(s)	3080
Van91I	CCANNNNNTGG	3 cut(s)	1250, 1841, 2226
VpaK11BI	GGWCC	2 cut(s)	64, 2741
VspI	ATTAAT	1 cut(s)	2828
XapI	RAATTY	8 cut(s)	254, 342, 1557, 2284, 2325, 2389, 2594, 2994
XceI	RCATGY	1 cut(s)	1157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2065
XhoI	CTCGAG	1 cut(s)	1004
XspI	CTAG	3 cut(s)	1554, 1950, 2534
ZraI	GACGTC	1 cut(s)	1096
ZrmI	AGTACT	1 cut(s)	1260
Zsp2I	ATGCAT	2 cut(s)	970, 2827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.