FvH4_6g23460
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002868
Physical Location & Seq
Forward (+)
17520701 .. 17522304
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23460.t1

Sequence Viewer

Length: 819 bp
ATGGAGTCAAACTATCAAGAAGCCCCTACATTCTTTGAAGATCCGGTTGATGTTTATTTCCATTTTCTTCCACCTGGTTATCGCTTTGCCCCTACTGATGCAGAGCTGATCATATATTACTTACAGAAAAAGATTTTGAAGCAGGAACCACCCCTTAACAAGATTCGTGAAATCGATATTTATCTATACCATCCTCAATACCTTGCTGAGACACAATCCAACAGAGATGGAGAAAGAGAATGGTACTTTTTCACTCCCAGAGAGCGAAAGTACCTCCATGGTTCACGGCCAAATCGAACACAACGCTCCGGGAATGGATTCTGGAAGGTAACTGGAAAAGATGAAGTCATTACTTCAGCTGCTGGTGAAAGAATTGGATTCAAAAATACTCTTGATTACTTTGAAGGGACACATTCAGAGAACCAAAAGACCAAATGGAAAATGCACGAATATAGACTGAAAAAATCAGAGAGAGATGAAGAGATTGCTCCTTCAAATAACGAAAAAGCTCAACGTGACATGAAGTTAGATGATTGTGTTTTGTGTAAGATTTACACAAGTAACAGATGCAAGGTCGGGAAAATAATCAAGAGAAGCAAGAGTACTTCTGCAAAGAGATCATTCAATTCTGATCCAAATAGAGATGTTCAACATGAATACCAAGATCAAGATTGTGGCGCTCATCCTTCAGGACCCGTCAACAACTTCAGTAATCAAACCAATACATACGACATTATGCTAAGTTCTTTGGAAGAGGAAGTCAGAGCCTTTGATCATTGGCTAGCTAATGAAACAGCCACGAAGAAGCGTATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

273

Amino Acids

32.06

Weight (kDa)

7.09

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 153 1.1e-38 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 35, 626
AcoI YGGCCR 1 cut(s) 287
AcuI CTGAAG 3 cut(s) 339, 672, 691
AfaI GTAC 3 cut(s) 245, 272, 604
AgsI TTSAA 7 cut(s) 38, 139, 382, 404, 495, 625, 650
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 4 cut(s) 106, 359, 509, 785
AluI AGCT 4 cut(s) 106, 359, 509, 785
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 35, 626
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 377
AsuNHI GCTAGC 1 cut(s) 781
AvaII GGWCC 1 cut(s) 692
BarI GAAGNNNNNNTAC 2 cut(s) 586, 618
BbvI GCAGC 1 cut(s) 346
BccI CCATC 2 cut(s) 198, 221
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 2 cut(s) 108, 772
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 782
BfoI RGCGCY 1 cut(s) 681
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 2 cut(s) 75, 310
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 2 cut(s) 147, 694
BmrFI CCNGG 2 cut(s) 75, 310
BmsI GCATC 2 cut(s) 88, 557
BmtI GCTAGC 1 cut(s) 785
BpuMI CCSGG 1 cut(s) 310
Bsa29I ATCGAT 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 2 cut(s) 190, 682
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 337
BseXI GCAGC 1 cut(s) 346
BshFI GGCC 1 cut(s) 289
BshVI ATCGAT 1 cut(s) 174
BsiSI CCGG 2 cut(s) 44, 309
BslFI GGGAC 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 1 cut(s) 289
Bsp143I GATC 6 cut(s) 40, 108, 617, 631, 664, 772
Bsp19I CCATGG 1 cut(s) 277
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 147, 694
BspOI GCTAGC 1 cut(s) 785
BspPI GGATC 2 cut(s) 35, 626
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 6 cut(s) 40, 108, 617, 631, 664, 772
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 2 cut(s) 474, 747
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 2 cut(s) 207, 740
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 190, 682
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 6 cut(s) 43, 111, 620, 634, 667, 775
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 40, 108, 617, 631, 664, 772
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 308
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 1 cut(s) 289
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 2 cut(s) 190, 682
Cac8I GCNNGC 1 cut(s) 783
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 692
ClaI ATCGAT 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 3 cut(s) 244, 271, 603
CviAII CATG 3 cut(s) 278, 520, 653
CviJI RGCY 9 cut(s) 23, 106, 289, 359, 509, 767, 781, 785, 797
CviKI_1 RGCY 9 cut(s) 23, 106, 289, 359, 509, 767, 781, 785, 797
CviQI GTAC 3 cut(s) 244, 271, 603
DdeI CTNAG 2 cut(s) 207, 740
DpnI GATC 6 cut(s) 42, 110, 619, 633, 666, 774
DpnII GATC 6 cut(s) 40, 108, 617, 631, 664, 772
EaeI YGGCCR 1 cut(s) 287
Eam1104I CTCTTC 2 cut(s) 474, 747
EarI CTCTTC 2 cut(s) 474, 747
Eco130I CCWWGG 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 692
Eco57I CTGAAG 3 cut(s) 339, 672, 691
EcoO109I RGGNCCY 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 3 cut(s) 281, 523, 656
FaqI GGGAC 1 cut(s) 421
FatI CATG 3 cut(s) 277, 519, 652
FbaI TGATCA 2 cut(s) 108, 772
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 2 cut(s) 177, 669
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 1 cut(s) 782
GlaI GCGC 1 cut(s) 679
GluI GCNGC 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 681
HaeIII GGCC 1 cut(s) 289
HapII CCGG 2 cut(s) 44, 309
HhaI GCGC 1 cut(s) 680
Hin1II CATG 3 cut(s) 281, 523, 656
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 4 cut(s) 5, 163, 318, 378
HpaII CCGG 2 cut(s) 44, 309
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 2 cut(s) 284, 700
Hpy188I TCNGA 4 cut(s) 418, 469, 631, 764
Hpy188III TCNNGA 8 cut(s) 17, 167, 322, 392, 577, 589, 668, 690
Hpy8I GTNNAC 2 cut(s) 284, 700
HpyAV CCTTC 4 cut(s) 319, 398, 501, 696
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 4 cut(s) 101, 445, 570, 611
HpyF3I CTNAG 2 cut(s) 207, 740
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 3 cut(s) 281, 523, 656
HspAI GCGC 1 cut(s) 678
Ksp22I TGATCA 2 cut(s) 108, 772
Kzo9I GATC 6 cut(s) 40, 108, 617, 631, 664, 772
LmnI GCTCC 2 cut(s) 311, 493
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 2 cut(s) 88, 557
MabI ACCWGGT 1 cut(s) 73
MaeI CTAG 1 cut(s) 782
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 3 cut(s) 328, 515, 560
MalI GATC 6 cut(s) 42, 110, 619, 633, 666, 774
MboI GATC 6 cut(s) 40, 108, 617, 631, 664, 772
MboII GAAGA 5 cut(s) 50, 59, 491, 764, 814
MflI RGATCY 1 cut(s) 40
MluCI AATT 2 cut(s) 372, 625
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 204, 284, 748
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 2 cut(s) 44, 309
MspR9I CCNGG 2 cut(s) 75, 310
MvaI CCWGG 1 cut(s) 75
NciI CCSGG 1 cut(s) 310
NcoI CCATGG 1 cut(s) 277
NdeII GATC 6 cut(s) 40, 108, 617, 631, 664, 772
NheI GCTAGC 1 cut(s) 781
NlaIII CATG 3 cut(s) 281, 523, 656
NlaIV GGNNCC 2 cut(s) 147, 694
NmuCI GTSAC 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 3 cut(s) 163, 318, 378
PfoI TCCNGGA 1 cut(s) 308
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 147, 694
PspPI GGNCC 1 cut(s) 692
PspPPI RGGWCCY 1 cut(s) 692
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 3 cut(s) 245, 272, 604
RsaNI GTAC 3 cut(s) 244, 271, 603
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 6 cut(s) 40, 108, 617, 631, 664, 772
Sau96I GGNCC 1 cut(s) 692
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 75, 310
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 2 cut(s) 88, 557
SinI GGWCC 1 cut(s) 692
Sse9I AATT 2 cut(s) 372, 625
SspMI CTAG 1 cut(s) 782
StyD4I CCNGG 2 cut(s) 73, 308
StyI CCWWGG 1 cut(s) 277
TaiI ACGT 1 cut(s) 517
TaqI TCGA 2 cut(s) 174, 295
TasI AATT 2 cut(s) 372, 625
TatI WGTACW 1 cut(s) 602
TfiI GAWTC 3 cut(s) 163, 318, 378
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 5 cut(s) 357, 492, 536, 669, 804
VpaK11BI GGWCC 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 782
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.