Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002868

Physical Location & Seq

Genomic Coordinates Forward (+)

16873329 .. 16873938

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0192000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTTCTCTCCTTGGAGGTTCTTCTTCTGCAGAATATGCAGGGCTAAGCAGATGTCATATTTTATCAGACATGGAAGACGAAGAGGATCTTTTTGAGATTGATCTCGAGGCGGTTGAGAGTATTCCTCCTCCACAGTACAACTGGGACAGATATTTCACTGCAGCCGGAGATGTTCTTCTTGCAAATTGCCTGCTGCCTGTAACTGATATCTCTCGTGCGATTCCAACAGTTTCAGAAGCATTGTCATACAAGACTGGTGCTAATGTTGTAATGATACCGGAACCGGTGCCCCTGGGACAGCTCCTTAGGCTGCCATTCTTTGAGGCTTTTGGTCTTCACCAAAAGAGAGTGAAACCTCATTGGGATTTCGTTGAGAAAAATGAAACCCGACATTTAGACGCTGGGTCTGAGTCATTCAGAGGAAGTAGAAGTTCCTTCAATTTTGATTCTGTAAGTGAAGATATTGCAATCTATGGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

4.53

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23460 FvH4_6g23470
malus_domestica	MD14G1069400.v1.1
prunus_persica	Prupe.7G064900_v2.0.a1 Prupe.7G065000_v2.0.a1
pyrus_communis	pycom12g06060
rosa_chinensis	RchiOBHm_Chr3g0481471 RchiOBHm_Chr3g0481481
rosa_laevigata	RLG00000023394 RLG00000023396 RLG00000023397
rosa_multiflora	Rmu_sc0000064.1_g000029 Rmu_sc0000064.1_g000030 Rmu_sc0000064.1_g000031 Rmu_sc0011674.1_g000001 Rmu_sc0020270.1_g000003 Rmu_sc0021673.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400410 Rroxscaffold_6G00400420 Rroxscaffold_6G00400430
rosa_rugosa	Rorug03G0191900 Rorug03G0192000 Rorug03G0192100
rosa_samantha	Rh3AG243100 Rh3AG243200 Rh3AG243300 Rh3BG278000 Rh3BG278100 Rh3BG278300 Rh3CG273000 Rh3CG273100 Rh3CG273300 Rh3DG270000 Rh3DG270100 Rh3DG270200 Rh3DG270300
rosa_wichuraiana	Rw3G021710 Rw3G021720 Rw3G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	140
AgeI	ACCGGT	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	442
AhdI	GACNNNNNGTC	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
AlwI	GGATC	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	164, 196, 313
AsiGI	ACCGGT	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	2 cut(s)	84, 329
BbvI	GCAGC	3 cut(s)	176, 183, 300
BciT130I	CCWGG	1 cut(s)	296
BfmI	CTRYAG	2 cut(s)	30, 162
BisI	GCNGC	3 cut(s)	165, 197, 314
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	3 cut(s)	166, 198, 315
Bme1390I	CCNGG	1 cut(s)	296
BmeRI	GACNNNNNGTC	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	285, 291
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	84, 329
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
Bpu1102I	GCTNAGC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	13, 294, 295
BsaWI	WCCGGW	2 cut(s)	280, 286
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	149, 262
Bse21I	CCTNAGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	3 cut(s)	13, 294, 295
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	149, 262
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	3 cut(s)	176, 183, 300
BseYI	CCCAGC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	289
BshTI	ACCGGT	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	168, 281, 287
BslFI	GGGAC	2 cut(s)	161, 312
BsmFI	GGGAC	2 cut(s)	161, 312
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	88, 103
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	285, 291
BspMAI	CTGCAG	2 cut(s)	34, 166
BspPI	GGATC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	149, 262
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	13, 294, 295
BssMI	GATC	2 cut(s)	88, 103
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	138, 232
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	47, 308, 411
BstKTI	GATC	2 cut(s)	91, 106
BstMBI	GATC	2 cut(s)	88, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 310
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	2 cut(s)	30, 162
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	176, 183, 300
BstV2I	GAAGAC	2 cut(s)	84, 329
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	308
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	286
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	139
CspAI	ACCGGT	1 cut(s)	286
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	7 cut(s)	5, 46, 167, 304, 313, 329, 483
CviKI_1	RGCY	7 cut(s)	5, 46, 167, 304, 313, 329, 483
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	3 cut(s)	47, 308, 411
DpnI	GATC	2 cut(s)	90, 105
DpnII	GATC	2 cut(s)	88, 103
DriI	GACNNNNNGTC	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	78
Eam1105I	GACNNNNNGTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	211
Eco81I	CCTNAGG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	1 cut(s)	76
FaiI	YATR	5 cut(s)	39, 60, 74, 250, 477
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	161, 312
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	165, 197, 314
Fsp4HI	GCNGC	3 cut(s)	165, 197, 314
GluI	GCNGC	3 cut(s)	165, 197, 314
GsaI	CCCAGC	1 cut(s)	408
HapII	CCGG	3 cut(s)	168, 281, 287
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	76
HinfI	GANTC	3 cut(s)	223, 413, 449
HpaII	CCGG	3 cut(s)	168, 281, 287
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	4 cut(s)	70, 238, 412, 422
Hpy188III	TCNNGA	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	2 cut(s)	138, 232
HpyCH4V	TGCA	5 cut(s)	32, 41, 164, 185, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 310
HpyF3I	CTNAG	3 cut(s)	47, 308, 411
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	88, 103
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	3 cut(s)	176, 183, 300
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	90, 105
MboI	GATC	2 cut(s)	88, 103
MboII	GAAGA	7 cut(s)	15, 18, 89, 95, 170, 329, 473
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	2 cut(s)	187, 442
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	8 cut(s)	11, 79, 103, 138, 141, 319, 369, 416
MspI	CCGG	3 cut(s)	168, 281, 287
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	38, 310
NdeII	GATC	2 cut(s)	88, 103
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	285, 291
PaeR7I	CTCGAG	1 cut(s)	107
PasI	CCCWGGG	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	223, 449
PinAI	ACCGGT	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	166, 198, 315
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	285, 291
PstI	CTGCAG	2 cut(s)	34, 166
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SatI	GCNGC	3 cut(s)	165, 197, 314
Sau3AI	GATC	2 cut(s)	88, 103
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	3 cut(s)	22, 306, 361
SfcI	CTRYAG	2 cut(s)	30, 162
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	187, 442
SsiI	CCGC	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	138, 232
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	187, 442
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	223, 449
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	3 cut(s)	164, 196, 313
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.