Rh3BG278100
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002868
Physical Location & Seq
Forward (+)
27298121 .. 27300836
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG278100.1

Sequence Viewer

Length: 1245 bp
ATGTCTGATGGAGAGATTGATGATTATTTTAGATCTTTTCCACCAGGTTATCAATTTGTCCCCACTGATGCAGAGTTGATTATATATTATTTGAAGAGAAAGATCTTGAATCAACAACTACCCGTGAACCGGATTCGTGATGAGAATATTTATCACTACCATCCTCAAACTCTTGCTGAAATGTATCCGAGAATTAGAGAAATTGAATGGTACTTTTTCTCTTCTAGAGACCGAAGGTACCCCAATGGATCTCGGCCTAATCGATCAGCAAAAGGTGGCTACTGGAAGGCAACGAAAAGAGATGAGATCATCACAGCTCAAGGTGGTGAAGAAATTGGATTCAAAATGCATCTGGAATTTTATGAAGGAACACATGCACAAGGTAGAAAGACAAACTGGAAAATGCATGAATATAGGATCAAAGAAGAGAATGAAGAGAATGATATTGGTCCTCCTCAAAATACCAACAAGGGTGAAGGTATCAGCATGAGGTTGGATGATTGGGTTTTGTGTAAGATTTACATAAAGAAGAATTTCAAGGCTGATACAGACAGCAACAGTTCAAAGACATCAGACAATTCTGATCAAGTAGTACTCCCAGTAACAAATGTTACAACATCTAGTGATTGTCAAAATAAATTAGCTATTCAGCATGAAGTTCAAGATCAATCTCTCAATGCCTCACAGTTCGACCACAATGGCTTCCCAACTTTGACGAACTATCGTGATGTAGAATCCAGCAGCAGCAACTTCTGGAATCAAAACTACACAGATGATTACGACACGTACTTGATGCAGATGAGTCGAGATCCATCATCGTCACGATTCTTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGGAGCCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATGTTACCTGCGCATGTCAGAGAATGTGATGAGAATATGTCAGAGAATAAGAATCAAAACTATACAGATGATTACGACACGTACTTGATGCAGATGAGTAGAGAGCCATCGTCGTCACGATTATTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGGAGTCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATTGTGTTACCTGCGCATGTCAGAGAATATGATAATCGTGCATGTAAAGTCGAGCCTATTCAGCCTGTTAGGGATGAAGGTGATGATCATGTGTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

414

Amino Acids

47.83

Weight (kDa)

4.85

Isoelectric Point (pI)

60.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 7.6e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 4 cut(s) 874, 936, 1093, 1158
Acc36I ACCTGC 2 cut(s) 940, 1162
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AclWI GGATC 5 cut(s) 256, 425, 803, 908, 1127
AcsI RAATTY 2 cut(s) 356, 532
AfaI GTAC 5 cut(s) 212, 239, 594, 788, 1007
AfiI CCNNNNNNNGG 1 cut(s) 129
AflIII ACRYGT 2 cut(s) 783, 1002
AgsI TTSAA 9 cut(s) 94, 109, 206, 343, 538, 564, 662, 858, 1077
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 2 cut(s) 317, 644
AluI AGCT 2 cut(s) 317, 644
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 5 cut(s) 256, 425, 803, 908, 1127
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 741, 744
ApoI RAATTY 2 cut(s) 356, 532
Asp700I GAANNNNTTC 1 cut(s) 533
Asp718I GGTACC 1 cut(s) 237
AspLEI GCGC 4 cut(s) 875, 937, 1094, 1159
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 338, 485, 1235
AvaII GGWCC 1 cut(s) 449
BanI GGYRCC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 753, 756
BccI CCATC 4 cut(s) 2, 168, 820, 1039
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 195
BclI TGATCA 2 cut(s) 583, 1228
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 225, 621
BfmI CTRYAG 2 cut(s) 888, 1107
BfuAI ACCTGC 2 cut(s) 940, 1162
BfuI GTATCC 1 cut(s) 195
BglII AGATCT 2 cut(s) 32, 102
BisI GCNGC 2 cut(s) 742, 745
BlsI GCNGC 2 cut(s) 743, 746
BmcAI AGTACT 1 cut(s) 594
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 239, 885
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 593
BmsI GCATC 4 cut(s) 58, 358, 783, 1002
BmuI ACTGGG 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 262
BsaAI YACGTR 2 cut(s) 786, 1005
BsaI GGTCTC 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 3 cut(s) 287, 401, 599
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 262
BseGI GGATG 3 cut(s) 160, 502, 1222
BseLI CCNNNNNNNGG 1 cut(s) 129
BseNI ACTGG 3 cut(s) 287, 401, 599
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 753, 756
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 262
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 1 cut(s) 256
Bso31I GGTCTC 1 cut(s) 222
BspANI GGCC 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 239, 885
BspMI ACCTGC 2 cut(s) 940, 1162
BspPI GGATC 5 cut(s) 256, 425, 803, 908, 1127
BspT107I GGYRCC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 222
BsrI ACTGG 3 cut(s) 287, 401, 599
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 560, 687
Bst6I CTCTTC 4 cut(s) 89, 226, 420, 429
BstBAI YACGTR 2 cut(s) 786, 1005
BstF5I GGATG 3 cut(s) 160, 502, 1222
BstHHI GCGC 4 cut(s) 875, 937, 1094, 1159
BstMAI GTCTC 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 1204
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 4 cut(s) 377, 941, 1163, 1188
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 888, 1107
BstV1I GCAGC 2 cut(s) 753, 756
BstX2I RGATCY 4 cut(s) 32, 102, 248, 808
BstYI RGATCY 4 cut(s) 32, 102, 248, 808
Bsu15I ATCGAT 1 cut(s) 262
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 256
BsuTUI ATCGAT 1 cut(s) 262
BtsCI GGATG 3 cut(s) 160, 502, 1222
BtsIMutI CAGTG 1 cut(s) 63
BveI ACCTGC 2 cut(s) 940, 1162
CfoI GCGC 4 cut(s) 875, 937, 1094, 1159
Cfr13I GGNCC 1 cut(s) 449
ClaI ATCGAT 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 5 cut(s) 211, 238, 593, 787, 1006
CviAII CATG 8 cut(s) 374, 407, 487, 653, 938, 1160, 1185, 1232
CviQI GTAC 5 cut(s) 211, 238, 593, 787, 1006
Eam1104I CTCTTC 4 cut(s) 89, 226, 420, 429
EarI CTCTTC 4 cut(s) 89, 226, 420, 429
Eco31I GGTCTC 1 cut(s) 222
Eco32I GATATC 2 cut(s) 903, 1122
Eco47I GGWCC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 43
EcoRV GATATC 2 cut(s) 903, 1122
EcoT22I ATGCAT 2 cut(s) 351, 408
FaeI CATG 8 cut(s) 377, 410, 490, 656, 941, 1163, 1188, 1235
FaqI GGGAC 1 cut(s) 44
FatI CATG 8 cut(s) 373, 406, 486, 652, 937, 1159, 1184, 1231
FbaI TGATCA 2 cut(s) 583, 1228
Fnu4HI GCNGC 2 cut(s) 742, 745
FokI GGATG 3 cut(s) 147, 509, 1229
Fsp4HI GCNGC 2 cut(s) 742, 745
FspBI CTAG 2 cut(s) 225, 621
FspI TGCGCA 4 cut(s) 874, 936, 1093, 1158
GlaI GCGC 4 cut(s) 874, 936, 1093, 1158
GluI GCNGC 2 cut(s) 742, 745
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 130
HhaI GCGC 4 cut(s) 875, 937, 1094, 1159
Hin1II CATG 8 cut(s) 377, 410, 490, 656, 941, 1163, 1188, 1235
Hin6I GCGC 4 cut(s) 873, 935, 1092, 1157
HinP1I GCGC 4 cut(s) 873, 935, 1092, 1157
HinfI GANTC 9 cut(s) 109, 133, 339, 734, 757, 802, 825, 976, 1103
HpaII CCGG 1 cut(s) 130
HphI GGTGA 3 cut(s) 338, 485, 1235
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 9 cut(s) 7, 189, 574, 583, 907, 944, 967, 1126, 1166
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 1039
HpyAV CCTTC 5 cut(s) 228, 280, 359, 470, 1214
HpyCH4III ACNGT 2 cut(s) 560, 687
HpyCH4IV ACGT 2 cut(s) 785, 1004
HpyCH4V TGCA 9 cut(s) 71, 349, 377, 406, 796, 850, 1015, 1069, 1184
HpyF10VI GCNNNNNNNGC 1 cut(s) 1204
HpySE526I ACGT 2 cut(s) 785, 1004
Hsp92II CATG 8 cut(s) 377, 410, 490, 656, 941, 1163, 1188, 1235
HspAI GCGC 4 cut(s) 873, 935, 1092, 1157
KpnI GGTACC 1 cut(s) 241
Ksp22I TGATCA 2 cut(s) 583, 1228
LmnI GCTCC 1 cut(s) 883
Lsp1109I GCAGC 2 cut(s) 753, 756
LweI GCATC 4 cut(s) 58, 358, 783, 1002
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 2 cut(s) 225, 621
MaeII ACGT 2 cut(s) 785, 1004
MaeIII GTNAC 6 cut(s) 601, 610, 819, 927, 1038, 1149
MflI RGATCY 4 cut(s) 32, 102, 248, 808
MluCI AATT 8 cut(s) 53, 192, 201, 333, 356, 532, 577, 638
MlyI GAGTC 2 cut(s) 811, 1112
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 7 cut(s) 174, 462, 465, 483, 691, 901, 1120
Mph1103I ATGCAT 2 cut(s) 351, 408
MroXI GAANNNNTTC 1 cut(s) 533
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 1204
NlaIII CATG 8 cut(s) 377, 410, 490, 656, 941, 1163, 1188, 1235
NlaIV GGNNCC 2 cut(s) 239, 885
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 819, 1038
NsbI TGCGCA 4 cut(s) 874, 936, 1093, 1158
NsiI ATGCAT 2 cut(s) 351, 408
NspI RCATGY 4 cut(s) 377, 941, 1163, 1188
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 7 cut(s) 109, 133, 339, 734, 757, 825, 976
PkrI GCNGC 2 cut(s) 743, 746
PleI GAGTC 2 cut(s) 810, 1111
PpsI GAGTC 2 cut(s) 810, 1111
Ppu21I YACGTR 2 cut(s) 786, 1005
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 239, 885
PspPI GGNCC 1 cut(s) 449
PsuI RGATCY 4 cut(s) 32, 102, 248, 808
RsaI GTAC 5 cut(s) 212, 239, 594, 788, 1007
RsaNI GTAC 5 cut(s) 211, 238, 593, 787, 1006
SatI GCNGC 2 cut(s) 742, 745
Sau96I GGNCC 1 cut(s) 449
ScaI AGTACT 1 cut(s) 594
SchI GAGTC 2 cut(s) 811, 1112
ScrFI CCNGG 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 4 cut(s) 58, 358, 783, 1002
SfcI CTRYAG 2 cut(s) 888, 1107
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 8 cut(s) 53, 192, 201, 333, 356, 532, 577, 638
SspI AATATT 1 cut(s) 148
SspMI CTAG 2 cut(s) 225, 621
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 560, 687
TaiI ACGT 2 cut(s) 788, 1007
TaqI TCGA 6 cut(s) 262, 690, 805, 912, 1131, 1194
TaqII GACCGA 1 cut(s) 246
TasI AATT 8 cut(s) 53, 192, 201, 333, 356, 532, 577, 638
TatI WGTACW 1 cut(s) 592
TfiI GAWTC 7 cut(s) 109, 133, 339, 734, 757, 825, 976
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 819, 1038
TseI GCWGC 2 cut(s) 741, 744
Tsp45I GTSAC 2 cut(s) 819, 1038
TspDTI ATGAA 5 cut(s) 378, 423, 447, 669, 1233
TspGWI ACGGA 2 cut(s) 828, 1047
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 2 cut(s) 356, 532
XbaI TCTAGA 1 cut(s) 224
XceI RCATGY 4 cut(s) 377, 941, 1163, 1188
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 2 cut(s) 225, 621
ZrmI AGTACT 1 cut(s) 594
Zsp2I ATGCAT 2 cut(s) 351, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.