Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020270.1

Orthogroup ID

OG0002868

Physical Location & Seq

Genomic Coordinates Forward (+)

15448 .. 16398

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020270.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgtatccgagaattagagaaattgaatggtactttttctcttccagagaccgaaggtaccccaatggatctcggcctaatcgatcagcaaaaggtggatactggaaggcaacgaaaagagatgagatcatcacagctcaaggtggtgaagaaattggattcaaaatgcatctggaattttatgaaggaacacatgcacaaggtagaaagacaaactggaaaatgcatgaatataggatcaaagaagagaatgaagagaatgatattggtcctcctcaaaataccaacaagggtgaaggtatcagcatgaggttggatgattgggttttgtgtaagatttacataaagaagaatttcaaggttgatacagacagcaacagtttaaagacatcagacaattctgatcaagtagtactcccagtaacaaatgttacaacatctcgtgattgtcaaaataaattagctattcagcatgaagttcaagatcaatctctcaatgcctcacaattcgaccacaatggcttctcaactttgacgaactatcgtgatgtagaatccagcagcagcaacttctggaatcaaaactacacagatgattacgacacgtacttgatgcagatgagtcgagatccattatcgtcacgattcttttcttatccgtttcccttgcaatcttcaacagaccagatttgcgcaggattggagcctgtagatgataagatatcacaggtcgatccaagttctattgtgttacctgcgcatgtcagagaatatgataatcgtgcatgtaaagccgagcctattcagcctgcagttagggatgaaggtgatgatcatgtgtctaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

282

Amino Acids

32.62

Weight (kDa)

5.35

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23460 FvH4_6g23470
malus_domestica	MD14G1069400.v1.1
prunus_persica	Prupe.7G064900_v2.0.a1 Prupe.7G065000_v2.0.a1
pyrus_communis	pycom12g06060
rosa_chinensis	RchiOBHm_Chr3g0481471 RchiOBHm_Chr3g0481481
rosa_laevigata	RLG00000023394 RLG00000023396 RLG00000023397
rosa_multiflora	Rmu_sc0000064.1_g000029 Rmu_sc0000064.1_g000030 Rmu_sc0000064.1_g000031 Rmu_sc0011674.1_g000001 Rmu_sc0020270.1_g000003 Rmu_sc0021673.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400410 Rroxscaffold_6G00400420 Rroxscaffold_6G00400430
rosa_rugosa	Rorug03G0191900 Rorug03G0192000 Rorug03G0192100
rosa_samantha	Rh3AG243100 Rh3AG243200 Rh3AG243300 Rh3BG278000 Rh3BG278100 Rh3BG278300 Rh3CG273000 Rh3CG273100 Rh3CG273300 Rh3DG270000 Rh3DG270100 Rh3DG270200 Rh3DG270300
rosa_wichuraiana	Rw3G021710 Rw3G021720 Rw3G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	694, 759
Acc36I	ACCTGC	1 cut(s)	763
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	57
AclWI	GGATC	4 cut(s)	76, 245, 623, 728
AcsI	RAATTY	2 cut(s)	176, 352
AfaI	GTAC	4 cut(s)	32, 59, 414, 608
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	5 cut(s)	26, 163, 358, 482, 678
AluBI	AGCT	2 cut(s)	137, 464
AluI	AGCT	2 cut(s)	137, 464
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	4 cut(s)	76, 245, 623, 728
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	561, 564
ApoI	RAATTY	2 cut(s)	176, 352
Asp700I	GAANNNNTTC	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	57
AspLEI	GCGC	2 cut(s)	695, 760
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	158, 305, 839
AvaII	GGWCC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	573, 576
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciVI	GTATCC	2 cut(s)	15, 92
BclI	TGATCA	2 cut(s)	403, 832
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	708, 810
BfuAI	ACCTGC	1 cut(s)	763
BfuI	GTATCC	2 cut(s)	15, 92
BisI	GCNGC	2 cut(s)	562, 565
BlsI	GCNGC	2 cut(s)	563, 566
BmcAI	AGTACT	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	59, 705
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	178, 603
BmuI	ACTGGG	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	42
Bse1I	ACTGG	3 cut(s)	107, 221, 419
BseCI	ATCGAT	1 cut(s)	82
BseGI	GGATG	2 cut(s)	322, 826
BseNI	ACTGG	3 cut(s)	107, 221, 419
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	573, 576
BshFI	GGCC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	57
BshVI	ATCGAT	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	42
Bsp143I	GATC	9 cut(s)	68, 83, 126, 237, 403, 484, 628, 733, 832
BspANI	GGCC	1 cut(s)	76
BspDI	ATCGAT	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	59, 705
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	4 cut(s)	76, 245, 623, 728
BspT107I	GGYRCC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	107, 221, 419
BssMI	GATC	9 cut(s)	68, 83, 126, 237, 403, 484, 628, 733, 832
BssSI	CACGAG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	3 cut(s)	46, 240, 249
BstBAI	YACGTR	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	810
BstF5I	GGATG	2 cut(s)	322, 826
BstHHI	GCGC	2 cut(s)	695, 760
BstKTI	GATC	9 cut(s)	71, 86, 129, 240, 406, 487, 631, 736, 835
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	9 cut(s)	68, 83, 126, 237, 403, 484, 628, 733, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	791, 805
BstNSI	RCATGY	3 cut(s)	197, 764, 789
BstSFI	CTRYAG	2 cut(s)	708, 810
BstV1I	GCAGC	2 cut(s)	573, 576
BstX2I	RGATCY	2 cut(s)	68, 628
BstYI	RGATCY	2 cut(s)	68, 628
Bsu15I	ATCGAT	1 cut(s)	82
BsuI	GTATCC	2 cut(s)	15, 92
BsuRI	GGCC	1 cut(s)	76
BsuTUI	ATCGAT	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	322, 826
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	1 cut(s)	810
CfoI	GCGC	2 cut(s)	695, 760
Cfr13I	GGNCC	1 cut(s)	269
ClaI	ATCGAT	1 cut(s)	82
Csp6I	GTAC	4 cut(s)	31, 58, 413, 607
CviAII	CATG	7 cut(s)	194, 227, 307, 473, 761, 786, 836
CviJI	RGCY	8 cut(s)	76, 137, 464, 522, 706, 794, 799, 808
CviKI_1	RGCY	8 cut(s)	76, 137, 464, 522, 706, 794, 799, 808
CviQI	GTAC	4 cut(s)	31, 58, 413, 607
DpnI	GATC	9 cut(s)	70, 85, 128, 239, 405, 486, 630, 735, 834
DpnII	GATC	9 cut(s)	68, 83, 126, 237, 403, 484, 628, 733, 832
DraI	TTTAAA	1 cut(s)	384
Eam1104I	CTCTTC	3 cut(s)	46, 240, 249
EarI	CTCTTC	3 cut(s)	46, 240, 249
Eco31I	GGTCTC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	723
EcoT22I	ATGCAT	2 cut(s)	171, 228
FaeI	CATG	7 cut(s)	197, 230, 310, 476, 764, 789, 839
FatI	CATG	7 cut(s)	193, 226, 306, 472, 760, 785, 835
FbaI	TGATCA	2 cut(s)	403, 832
Fnu4HI	GCNGC	2 cut(s)	562, 565
FokI	GGATG	2 cut(s)	329, 833
Fsp4HI	GCNGC	2 cut(s)	562, 565
FspI	TGCGCA	2 cut(s)	694, 759
GlaI	GCGC	2 cut(s)	694, 759
GluI	GCNGC	2 cut(s)	562, 565
HaeIII	GGCC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	695, 760
Hin1II	CATG	7 cut(s)	197, 230, 310, 476, 764, 789, 839
Hin6I	GCGC	2 cut(s)	693, 758
HinP1I	GCGC	2 cut(s)	693, 758
HinfI	GANTC	5 cut(s)	159, 554, 577, 622, 645
HphI	GGTGA	3 cut(s)	158, 305, 839
Hpy188I	TCNGA	4 cut(s)	9, 394, 403, 767
Hpy188III	TCNNGA	8 cut(s)	45, 173, 443, 482, 545, 574, 626, 642
HpyAV	CCTTC	5 cut(s)	48, 100, 179, 290, 818
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	7 cut(s)	169, 197, 226, 616, 670, 785, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	791, 805
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	7 cut(s)	197, 230, 310, 476, 764, 789, 839
HspAI	GCGC	2 cut(s)	693, 758
KpnI	GGTACC	1 cut(s)	61
Ksp22I	TGATCA	2 cut(s)	403, 832
Kzo9I	GATC	9 cut(s)	68, 83, 126, 237, 403, 484, 628, 733, 832
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	2 cut(s)	573, 576
LweI	GCATC	2 cut(s)	178, 603
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	4 cut(s)	421, 430, 639, 750
MalI	GATC	9 cut(s)	70, 85, 128, 239, 405, 486, 630, 735, 834
MboI	GATC	9 cut(s)	68, 83, 126, 237, 403, 484, 628, 733, 832
MboII	GAAGA	6 cut(s)	33, 161, 257, 266, 361, 666
MflI	RGATCY	2 cut(s)	68, 628
MluCI	AATT	8 cut(s)	12, 21, 153, 176, 352, 397, 458, 506
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	282, 285, 303, 511
Mph1103I	ATGCAT	2 cut(s)	171, 228
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	791, 805
NdeII	GATC	9 cut(s)	68, 83, 126, 237, 403, 484, 628, 733, 832
NlaIII	CATG	7 cut(s)	197, 230, 310, 476, 764, 789, 839
NlaIV	GGNNCC	2 cut(s)	59, 705
NmeAIII	GCCGAG	2 cut(s)	52, 820
NmuCI	GTSAC	1 cut(s)	639
NsbI	TGCGCA	2 cut(s)	694, 759
NsiI	ATGCAT	2 cut(s)	171, 228
NspI	RCATGY	3 cut(s)	197, 764, 789
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	4 cut(s)	159, 554, 577, 645
PkrI	GCNGC	2 cut(s)	563, 566
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
Ppu21I	YACGTR	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	59, 705
PspPI	GGNCC	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	814
PsuI	RGATCY	2 cut(s)	68, 628
RsaI	GTAC	4 cut(s)	32, 59, 414, 608
RsaNI	GTAC	4 cut(s)	31, 58, 413, 607
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	2 cut(s)	562, 565
Sau3AI	GATC	9 cut(s)	68, 83, 126, 237, 403, 484, 628, 733, 832
Sau96I	GGNCC	1 cut(s)	269
ScaI	AGTACT	1 cut(s)	414
SchI	GAGTC	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	178, 603
SfcI	CTRYAG	2 cut(s)	708, 810
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	8 cut(s)	12, 21, 153, 176, 352, 397, 458, 506
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	4 cut(s)	82, 510, 625, 732
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	8 cut(s)	12, 21, 153, 176, 352, 397, 458, 506
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	4 cut(s)	159, 554, 577, 645
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	639
TseI	GCWGC	2 cut(s)	561, 564
Tsp45I	GTSAC	1 cut(s)	639
TspDTI	ATGAA	5 cut(s)	198, 243, 267, 489, 837
TspGWI	ACGGA	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	2 cut(s)	176, 352
XceI	RCATGY	3 cut(s)	197, 764, 789
XmnI	GAANNNNTTC	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	414
Zsp2I	ATGCAT	2 cut(s)	171, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.