Rorug03G0192100
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002868
Physical Location & Seq
Reverse (-)
16896358 .. 16898269
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0192100.1

Sequence Viewer

Length: 519 bp
ATGGCAAGAATGTCGGAACCCTTAGTTGTTGGAAGAGTCATAGGAGATGTTCTTGATTACTTTACCCCAACTACTAAAATGATTGTCACTTACAACACCAAACTCGTCTTCAATGGACATGAGCTCTACCCATCTGCAGTCACCGCCAAACCTAGAGTTGAGATTCAAGGAGGCGACATGAGATCATTCTTCACTCTGGTGATGACAGACCCAGATGTTCCTGGCCCCAGTGATCCTTATTTGAAGGAGCACCTGCACTGGATTGTGACAGACATTCCAGGCACCACAGATGTTACATTTGGAAGAGAGATGGTGAGCTACGAGATGGCAAGGCCAAACATAGGAATCCACAGGTTTGTGTTTGTTCTTTTCAAGCAGAAACGAAGGCAGTCGGTGAACCCACCTTCCTCAAGGGATCACTTCAACACCCGATGCTTCGCAGCCGAAAATGACCTCGGTCTTCCTGTTGCTGCCGTTTACTTCAATGCGCAGAGAGAAACGGCAGCAAGAAGACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

172

Amino Acids

19.55

Weight (kDa)

9.13

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 50 - 160 1.3e-11 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 261
Acc16I TGCGCA 1 cut(s) 489
Acc36I ACCTGC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 281
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 227, 423
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 6 cut(s) 112, 167, 244, 373, 424, 484
AjnI CCWGG 2 cut(s) 220, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AleI CACNNNNGTG 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
AluBI AGCT 2 cut(s) 124, 318
AluI AGCT 2 cut(s) 124, 318
Alw21I GWGCWC 2 cut(s) 126, 252
AlwI GGATC 2 cut(s) 227, 423
AoxI GGCC 2 cut(s) 223, 332
ApeKI GCWGC 3 cut(s) 440, 470, 503
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 4 cut(s) 133, 211, 325, 406
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 100, 452
Bbv12I GWGCWC 2 cut(s) 126, 252
BbvI GCAGC 3 cut(s) 452, 457, 515
BccI CCATC 3 cut(s) 139, 304, 319
BceAI ACGGC 2 cut(s) 458, 516
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 222, 279
BfaI CTAG 2 cut(s) 153, 517
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 261
BisI GCNGC 3 cut(s) 441, 471, 504
BlsI GCNGC 3 cut(s) 442, 472, 505
Bme1390I CCNGG 2 cut(s) 222, 279
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 3 cut(s) 18, 226, 283
BmrFI CCNGG 2 cut(s) 222, 279
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 422
BmuI ACTGGG 1 cut(s) 222
BoxI GACNNNNGTC 1 cut(s) 456
BpiI GAAGAC 2 cut(s) 100, 452
BpuEI CTTGAG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 454
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 228, 263
BseBI CCWGG 2 cut(s) 222, 279
BseDI CCNNGG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 228, 263
BseXI GCAGC 3 cut(s) 452, 457, 515
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 225, 334
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 126, 252
BslI CCNNNNNNNGG 1 cut(s) 341
BsnI GGCC 2 cut(s) 225, 334
Bsp1286I GDGCHC 2 cut(s) 126, 252
Bsp143I GATC 3 cut(s) 182, 232, 415
BspACI CCGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 225, 334
BspLI GGNNCC 3 cut(s) 18, 226, 283
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 2 cut(s) 227, 423
BspT107I GGYRCC 1 cut(s) 281
BsrI ACTGG 2 cut(s) 228, 263
BssECI CCNNGG 1 cut(s) 454
BssMI GATC 3 cut(s) 182, 232, 415
Bst2UI CCWGG 2 cut(s) 222, 279
Bst6I CTCTTC 2 cut(s) 28, 298
BstDEI CTNAG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 3 cut(s) 185, 235, 418
BstMBI GATC 3 cut(s) 182, 232, 415
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 2 cut(s) 222, 279
BstPAI GACNNNNGTC 1 cut(s) 456
BstSCI CCNGG 2 cut(s) 220, 277
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 452, 457, 515
BstV2I GAAGAC 2 cut(s) 100, 452
BsuRI GGCC 2 cut(s) 225, 334
BtsIMutI CAGTG 2 cut(s) 235, 256
BveI ACCTGC 1 cut(s) 261
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 2 cut(s) 119, 178
CviJI RGCY 5 cut(s) 124, 225, 318, 334, 443
CviKI_1 RGCY 5 cut(s) 124, 225, 318, 334, 443
DdeI CTNAG 1 cut(s) 22
DpnI GATC 3 cut(s) 184, 234, 417
DpnII GATC 3 cut(s) 182, 232, 415
Eam1104I CTCTTC 2 cut(s) 28, 298
EarI CTCTTC 2 cut(s) 28, 298
Ecl136II GAGCTC 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 220, 277
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 2 cut(s) 122, 181
FaiI YATR 4 cut(s) 41, 120, 179, 341
FatI CATG 2 cut(s) 118, 177
Fnu4HI GCNGC 3 cut(s) 441, 471, 504
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 441, 471, 504
FspBI CTAG 2 cut(s) 153, 517
FspI TGCGCA 1 cut(s) 489
GlaI GCGC 1 cut(s) 489
GluI GCNGC 3 cut(s) 441, 471, 504
HaeIII GGCC 2 cut(s) 225, 334
HhaI GCGC 1 cut(s) 490
Hin1II CATG 2 cut(s) 122, 181
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HinfI GANTC 3 cut(s) 36, 163, 345
HphI GGTGA 4 cut(s) 133, 211, 325, 406
Hpy166II GTNNAC 2 cut(s) 397, 478
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 397, 478
HpyAV CCTTC 3 cut(s) 238, 378, 414
HpyCH4V TGCA 2 cut(s) 137, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 22
Hsp92II CATG 2 cut(s) 122, 181
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 3 cut(s) 182, 232, 415
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 3 cut(s) 452, 457, 515
LweI GCATC 1 cut(s) 422
MaeI CTAG 2 cut(s) 153, 517
MaeIII GTNAC 4 cut(s) 85, 139, 265, 292
MalI GATC 3 cut(s) 184, 234, 417
MboI GATC 3 cut(s) 182, 232, 415
MboII GAAGA 5 cut(s) 45, 100, 181, 315, 452
MhlI GDGCHC 2 cut(s) 126, 252
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 3 cut(s) 164, 418, 464
MslI CAYNNNNRTG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 222, 279
MvaI CCWGG 2 cut(s) 222, 279
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 3 cut(s) 182, 232, 415
NlaIII CATG 2 cut(s) 122, 181
NlaIV GGNNCC 3 cut(s) 18, 226, 283
NmuCI GTSAC 3 cut(s) 85, 139, 265
NsbI TGCGCA 1 cut(s) 489
OliI CACNNNNGTG 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 163, 345
PkrI GCNGC 3 cut(s) 442, 472, 505
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 220, 277
PspGI CCWGG 2 cut(s) 220, 277
PspN4I GGNNCC 3 cut(s) 18, 226, 283
PspPI GGNCC 1 cut(s) 224
PstI CTGCAG 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 126
SatI GCNGC 3 cut(s) 441, 471, 504
Sau3AI GATC 3 cut(s) 182, 232, 415
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 222, 279
SduI GDGCHC 2 cut(s) 126, 252
SetI ASST 7 cut(s) 126, 154, 255, 320, 356, 406, 456
SfaNI GCATC 1 cut(s) 422
SfcI CTRYAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
SsiI CCGC 1 cut(s) 144
SspMI CTAG 2 cut(s) 153, 517
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 220, 277
TaqII GACCGA 1 cut(s) 446
TfiI GAWTC 2 cut(s) 163, 345
TscAI CASTG 2 cut(s) 235, 263
TseFI GTSAC 3 cut(s) 85, 139, 265
TseI GCWGC 3 cut(s) 440, 470, 503
Tsp45I GTSAC 3 cut(s) 85, 139, 265
TspRI CASTG 2 cut(s) 235, 263
XspI CTAG 2 cut(s) 153, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.