FvH4_6g23470
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002868
Physical Location & Seq
Forward (+)
17553024 .. 17554798
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23470.t1

Sequence Viewer

Length: 717 bp
ATGGAGGTTGAGCTGGAAGTCTTTGTTCAGGCTTCATCATTGGAGCCGGATATGCTCTCAAGGTCAAGCCGGAAGTTTTCGTCCAGGCATCATCGTCAAAGCCGAAGATGCTCTCAAGGTCGAGCCGAAAGTGGGGTGGAGGCGGTGTTGGAATCGAAGTGGAAGAATGGGAAGAGAGAGAACAAGAAAAACATATTTTGGGAGAAAAGTGAAACTGATTTTGAGGGGAGGGTTGATGATTATTTTAGATCTTTTCCACCAGGTTATCAATTTTTCCCAACTGATGAAGAGTTGATTATCTCTTATTTGAAGAGAAAGATCTTGAATCAAGAACTACCCATGAACCGGATTCGTGATGAGAATATCTATAATTACCATCCTCGAACTCTTGCTGGGAACGAAAGTACCCCAAAGGATCTAAGCCTAATCGAACAAGGTGGATACTGGAAAGCAACCAAAAGAGATGAAACCATCAAAACTCAAGGTGGTGAAGAAATTGGATATAAAATGCATTTGGATTTTTATGATGGAACACATGCACAAGGTACAAAGACAAACTGGAAAATGCATGAATACAGGATCAATGAAGAGAATGGCATTAGTTCCCGAAATAATAACAACAAGGGTGAAGGCAGCAGCAGGAGGGTACGTACGTACATGCGAAATAATTCTGTTTATATTGATGAAATCGAATTAGTATTTTATATGCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

239

Amino Acids

28.09

Weight (kDa)

7.81

Isoelectric Point (pI)

68.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 86 - 194 2.4e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 423, 587
AfaI GTAC 5 cut(s) 406, 547, 648, 652, 656
AfiI CCNNNNNNNGG 2 cut(s) 132, 345
AgsI TTSAA 2 cut(s) 310, 325
AjnI CCWGG 2 cut(s) 83, 259
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwI GGATC 2 cut(s) 423, 587
ApeKI GCWGC 2 cut(s) 633, 636
Asp700I GAANNNNTTC 1 cut(s) 667
AsuHPI GGTGA 2 cut(s) 500, 638
BaeI ACNNNNGTAYC 4 cut(s) 388, 421, 638, 671
BbvI GCAGC 2 cut(s) 645, 648
BccI CCATC 3 cut(s) 384, 479, 521
BciT130I CCWGG 2 cut(s) 85, 261
BciVI GTATCC 1 cut(s) 434
BfuI GTATCC 1 cut(s) 434
BglII AGATCT 2 cut(s) 248, 318
BisI GCNGC 2 cut(s) 634, 637
BlsI GCNGC 2 cut(s) 635, 638
Bme1390I CCNGG 2 cut(s) 85, 261
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 85, 261
BmsI GCATC 2 cut(s) 97, 98
BpuEI CTTGAG 3 cut(s) 43, 99, 465
BsaAI YACGTR 2 cut(s) 650, 654
BsaWI WCCGGW 1 cut(s) 345
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 634, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 345
Bse1I ACTGG 2 cut(s) 449, 563
BseBI CCWGG 2 cut(s) 85, 261
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 132, 345
BseNI ACTGG 2 cut(s) 449, 563
BseXI GCAGC 2 cut(s) 645, 648
BseYI CCCAGC 1 cut(s) 392
BsiSI CCGG 3 cut(s) 47, 70, 346
BsiWI CGTACG 1 cut(s) 650
BslI CCNNNNNNNGG 2 cut(s) 132, 345
Bsp143I GATC 4 cut(s) 248, 318, 415, 579
BspACI CCGC 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 2 cut(s) 423, 587
BsrI ACTGG 2 cut(s) 449, 563
BssMI GATC 4 cut(s) 248, 318, 415, 579
Bst2UI CCWGG 2 cut(s) 85, 261
Bst6I CTCTTC 4 cut(s) 167, 282, 305, 582
BstBAI YACGTR 2 cut(s) 650, 654
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 4 cut(s) 251, 321, 418, 582
BstMBI GATC 4 cut(s) 248, 318, 415, 579
BstMWI GCNNNNNNNGC 2 cut(s) 52, 108
BstNI CCWGG 2 cut(s) 85, 261
BstNSI RCATGY 3 cut(s) 539, 661, 713
BstSCI CCNGG 2 cut(s) 83, 259
BstSNI TACGTA 2 cut(s) 650, 654
BstV1I GCAGC 2 cut(s) 645, 648
BstX2I RGATCY 3 cut(s) 248, 318, 415
BstYI RGATCY 3 cut(s) 248, 318, 415
BsuI GTATCC 1 cut(s) 434
BtsCI GGATG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 711
CsiI ACCWGGT 1 cut(s) 259
Csp6I GTAC 5 cut(s) 405, 546, 647, 651, 655
CviAII CATG 6 cut(s) 340, 536, 569, 658, 710, 714
CviJI RGCY 7 cut(s) 13, 32, 46, 69, 102, 125, 423
CviKI_1 RGCY 7 cut(s) 13, 32, 46, 69, 102, 125, 423
CviQI GTAC 5 cut(s) 405, 546, 647, 651, 655
DdeI CTNAG 1 cut(s) 419
DpnI GATC 4 cut(s) 250, 320, 417, 581
DpnII GATC 4 cut(s) 248, 318, 415, 579
Eam1104I CTCTTC 4 cut(s) 167, 282, 305, 582
EarI CTCTTC 4 cut(s) 167, 282, 305, 582
Eco105I TACGTA 2 cut(s) 650, 654
EcoRII CCWGG 2 cut(s) 83, 259
EcoT22I ATGCAT 4 cut(s) 513, 570, 711, 715
FaeI CATG 6 cut(s) 343, 539, 572, 661, 713, 717
FatI CATG 6 cut(s) 339, 535, 568, 657, 709, 713
Fnu4HI GCNGC 2 cut(s) 634, 637
FokI GGATG 1 cut(s) 363
Fsp4HI GCNGC 2 cut(s) 634, 637
GluI GCNGC 2 cut(s) 634, 637
GsaI CCCAGC 1 cut(s) 396
HapII CCGG 3 cut(s) 47, 70, 346
Hin1II CATG 6 cut(s) 343, 539, 572, 661, 713, 717
HinfI GANTC 3 cut(s) 152, 325, 349
HpaII CCGG 3 cut(s) 47, 70, 346
HphI GGTGA 2 cut(s) 500, 638
Hpy188III TCNNGA 4 cut(s) 322, 329, 353, 606
HpyAV CCTTC 1 cut(s) 623
HpyCH4IV ACGT 2 cut(s) 649, 653
HpyCH4V TGCA 5 cut(s) 511, 539, 568, 709, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 108
HpyF3I CTNAG 1 cut(s) 419
HpySE526I ACGT 2 cut(s) 649, 653
Hsp92II CATG 6 cut(s) 343, 539, 572, 661, 713, 717
Kzo9I GATC 4 cut(s) 248, 318, 415, 579
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 2 cut(s) 645, 648
LweI GCATC 2 cut(s) 97, 98
MabI ACCWGGT 1 cut(s) 259
MaeII ACGT 2 cut(s) 649, 653
MalI GATC 4 cut(s) 250, 320, 417, 581
MboI GATC 4 cut(s) 248, 318, 415, 579
MboII GAAGA 7 cut(s) 117, 175, 184, 299, 322, 503, 599
MflI RGATCY 3 cut(s) 248, 318, 415
MluCI AATT 5 cut(s) 269, 370, 495, 667, 692
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 5 cut(s) 133, 217, 222, 390, 636
Mph1103I ATGCAT 4 cut(s) 513, 570, 711, 715
MroXI GAANNNNTTC 1 cut(s) 667
MspI CCGG 3 cut(s) 47, 70, 346
MspR9I CCNGG 2 cut(s) 85, 261
MvaI CCWGG 2 cut(s) 85, 261
MwoI GCNNNNNNNGC 2 cut(s) 52, 108
NdeII GATC 4 cut(s) 248, 318, 415, 579
NlaIII CATG 6 cut(s) 343, 539, 572, 661, 713, 717
NlaIV GGNNCC 1 cut(s) 45
NsiI ATGCAT 4 cut(s) 513, 570, 711, 715
NspI RCATGY 3 cut(s) 539, 661, 713
PaeI GCATGC 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 667
PfeI GAWTC 3 cut(s) 152, 325, 349
Pfl23II CGTACG 1 cut(s) 650
PkrI GCNGC 2 cut(s) 635, 638
Ppu21I YACGTR 2 cut(s) 650, 654
Psp6I CCWGG 2 cut(s) 83, 259
PspFI CCCAGC 1 cut(s) 392
PspGI CCWGG 2 cut(s) 83, 259
PspLI CGTACG 1 cut(s) 650
PspN4I GGNNCC 1 cut(s) 45
PsuI RGATCY 3 cut(s) 248, 318, 415
RsaI GTAC 5 cut(s) 406, 547, 648, 652, 656
RsaNI GTAC 5 cut(s) 405, 546, 647, 651, 655
SatI GCNGC 2 cut(s) 634, 637
Sau3AI GATC 4 cut(s) 248, 318, 415, 579
ScrFI CCNGG 2 cut(s) 85, 261
SexAI ACCWGGT 1 cut(s) 259
SfaNI GCATC 2 cut(s) 97, 98
SmlI CTYRAG 3 cut(s) 58, 114, 480
SmoI CTYRAG 3 cut(s) 58, 114, 480
SnaBI TACGTA 2 cut(s) 650, 654
SphI GCATGC 1 cut(s) 713
Sse9I AATT 5 cut(s) 269, 370, 495, 667, 692
SsiI CCGC 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 83, 259
TaiI ACGT 2 cut(s) 652, 656
TaqI TCGA 5 cut(s) 121, 155, 382, 429, 690
TasI AATT 5 cut(s) 269, 370, 495, 667, 692
TfiI GAWTC 3 cut(s) 152, 325, 349
TseI GCWGC 2 cut(s) 633, 636
TspDTI ATGAA 7 cut(s) 24, 300, 356, 480, 585, 600, 699
XceI RCATGY 3 cut(s) 539, 661, 713
XmnI GAANNNNTTC 1 cut(s) 667
Zsp2I ATGCAT 4 cut(s) 513, 570, 711, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.