Rroxscaffold_6G00400410
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002868
Physical Location & Seq
Reverse (-)
22508487 .. 22510429
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400410.1

Sequence Viewer

Length: 807 bp
ATGTCGAACAACATGGTTCCAGTAGTCTTGAACGAGACTGATGATTACTTCAATTCGATGCCACCCGGTTTTCGATTTGTTCCGACCGATGAAGTCTTGATTCTATGTTACTTGAGGAAGAAGTTATTGAACGAACCATTGCCCATTAACAGGATTCGTCATGTTAATATTTACCAATACCATCCTCGAGACCTTACCGCTATGTACGACCTCCTTCGAGAAAGGGAATGGTACTATTTCACTCCTATTACCCGAAAGTATGTGAACGGTTCTCGATCAAATCGAGTTGCACCGAATGGTTTTTGGAAGCCAAGAATGAGCAACCCCATCAAAGATAGGAATAATGAAGTAGTTGGGTACAGGACGAGTCTGGAATTTTATGAAGGGAAATATCCAAACGGAAATAAGACAGGGTGGAAAATGAATGAATATACAATCAATGAAGCAATTATTCCTCCAAATATTAATACAAATGGCAAAACTCGCATCAAGTTGGATGATTGTGTTTTGTGCAAGATTTTTACGCGTAAGGTGGCCAGGAAGCTTCAGAATGAGATACAATATCAGTTGGAGAATCCTATAGGTCGTAACAAAGCAACATCAACATCAATTGTTGGTCCAAGTAACACTACTACAACAACTGATGATCAGTTACCTGTGCATGACGCCATGGAACATGAGCCGCATAGTAACCATGAAGTGCAACAAGATGGTTCTTCTGATTCTAAGCACGAAGAAGAAGATGATGGTTGGTTGATCATTGGAGTAGAGTCTCTGACTGTCTCTTCAGATCCTATGATAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

268

Amino Acids

31.0

Weight (kDa)

6.19

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 21 - 145 2.1e-34 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 526
AciI CCGC 2 cut(s) 198, 683
AclWI GGATC 1 cut(s) 785
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 2 cut(s) 530, 771
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 3 cut(s) 206, 233, 359
AfiI CCNNNNNNNGG 2 cut(s) 150, 800
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 3 cut(s) 31, 52, 130
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 1 cut(s) 544
AluI AGCT 1 cut(s) 544
Alw26I GTCTC 4 cut(s) 29, 183, 777, 787
AlwI GGATC 1 cut(s) 785
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 534
ApoI RAATTY 1 cut(s) 374
AseI ATTAAT 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 617
BalI TGGCCA 1 cut(s) 536
BccI CCATC 4 cut(s) 189, 335, 704, 740
BciT130I CCWGG 1 cut(s) 538
BclI TGATCA 2 cut(s) 646, 756
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 4 cut(s) 29, 183, 777, 787
BfmI CTRYAG 1 cut(s) 579
BisI GCNGC 1 cut(s) 683
BlsI GCNGC 1 cut(s) 684
Bme1390I CCNGG 2 cut(s) 66, 538
Bme18I GGWCC 1 cut(s) 617
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 66, 538
BmsI GCATC 2 cut(s) 48, 495
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 669
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 800
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 538
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 2 cut(s) 181, 502
BseLI CCNNNNNNNGG 2 cut(s) 150, 800
BseMI GCAATG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 526
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 536
BsiEI CGRYCG 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 150, 800
BsmAI GTCTC 4 cut(s) 29, 183, 777, 787
BsnI GGCC 1 cut(s) 536
Bso31I GGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 4 cut(s) 275, 646, 756, 790
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 2 cut(s) 198, 683
BspANI GGCC 1 cut(s) 536
BspFNI CGCG 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 785
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 4 cut(s) 275, 646, 756, 790
BssNI GRCGYC 1 cut(s) 666
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 2 cut(s) 269, 781
Bst6I CTCTTC 1 cut(s) 790
BstACI GRCGYC 1 cut(s) 666
BstDEI CTNAG 1 cut(s) 726
BstDSI CCRYGG 1 cut(s) 669
BstENI CCTNNNNNAGG 1 cut(s) 798
BstF5I GGATG 2 cut(s) 181, 502
BstFNI CGCG 1 cut(s) 526
BstKTI GATC 4 cut(s) 278, 649, 759, 793
BstMAI GTCTC 4 cut(s) 29, 183, 777, 787
BstMBI GATC 4 cut(s) 275, 646, 756, 790
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNI CCWGG 1 cut(s) 538
BstSCI CCNGG 2 cut(s) 64, 536
BstSFI CTRYAG 1 cut(s) 579
BstUI CGCG 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
BsuRI GGCC 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 669
BtsCI GGATG 2 cut(s) 181, 502
Cfr13I GGNCC 1 cut(s) 617
CseI GACGC 1 cut(s) 674
Csp6I GTAC 3 cut(s) 205, 232, 358
CviAII CATG 6 cut(s) 13, 161, 662, 670, 677, 695
CviJI RGCY 4 cut(s) 310, 536, 544, 682
CviKI_1 RGCY 4 cut(s) 310, 536, 544, 682
CviQI GTAC 3 cut(s) 205, 232, 358
DdeI CTNAG 1 cut(s) 726
DpnI GATC 4 cut(s) 277, 648, 758, 792
DpnII GATC 4 cut(s) 275, 646, 756, 790
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 790
EarI CTCTTC 1 cut(s) 790
Eco130I CCWWGG 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 617
Eco57I CTGAAG 2 cut(s) 530, 771
Eco88I CYCGRG 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 6 cut(s) 16, 164, 665, 673, 680, 698
FatI CATG 6 cut(s) 12, 160, 661, 669, 676, 694
FbaI TGATCA 2 cut(s) 646, 756
Fnu4HI GCNGC 1 cut(s) 683
FokI GGATG 2 cut(s) 168, 509
Fsp4HI GCNGC 1 cut(s) 683
GluI GCNGC 1 cut(s) 683
HaeIII GGCC 1 cut(s) 536
HapII CCGG 1 cut(s) 66
HgaI GACGC 1 cut(s) 674
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 6 cut(s) 16, 164, 665, 673, 680, 698
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 6 cut(s) 100, 154, 367, 574, 722, 770
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 5 cut(s) 84, 549, 721, 777, 790
Hpy188III TCNNGA 6 cut(s) 28, 97, 188, 218, 273, 371
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 224, 377
HpyCH4III ACNGT 2 cut(s) 269, 781
HpyCH4V TGCA 4 cut(s) 290, 513, 661, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 1 cut(s) 726
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 6 cut(s) 16, 164, 665, 673, 680, 698
Ksp22I TGATCA 2 cut(s) 646, 756
Kzo9I GATC 4 cut(s) 275, 646, 756, 790
LpnPI CCDG 9 cut(s) 33, 79, 136, 346, 356, 396, 523, 550, 669
LweI GCATC 2 cut(s) 48, 495
MaeIII GTNAC 5 cut(s) 107, 587, 623, 651, 689
MalI GATC 4 cut(s) 277, 648, 758, 792
MboI GATC 4 cut(s) 275, 646, 756, 790
MboII GAAGA 6 cut(s) 130, 708, 746, 749, 752, 777
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 1 cut(s) 790
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 4 cut(s) 52, 374, 447, 609
MluI ACGCGT 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 2 cut(s) 376, 779
MmeI TCCRAC 3 cut(s) 107, 474, 549
MnlI CCTC 4 cut(s) 108, 195, 221, 465
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 147, 165, 465
Msp20I TGGCCA 1 cut(s) 536
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 66, 538
MunI CAATTG 1 cut(s) 609
MvaI CCWGG 1 cut(s) 538
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 1 cut(s) 483
NciI CCSGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 669
NdeII GATC 4 cut(s) 275, 646, 756, 790
NlaIII CATG 6 cut(s) 16, 164, 665, 673, 680, 698
NlaIV GGNNCC 1 cut(s) 18
PaeR7I CTCGAG 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfeI GAWTC 4 cut(s) 100, 154, 574, 722
PkrI GCNGC 1 cut(s) 684
PleI GAGTC 2 cut(s) 375, 778
PpsI GAGTC 2 cut(s) 375, 778
PshBI ATTAAT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 617
PsuI RGATCY 1 cut(s) 790
RsaI GTAC 3 cut(s) 206, 233, 359
RsaNI GTAC 3 cut(s) 205, 232, 358
SaqAI TTAA 3 cut(s) 147, 165, 465
SatI GCNGC 1 cut(s) 683
Sau3AI GATC 4 cut(s) 275, 646, 756, 790
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 2 cut(s) 376, 779
ScrFI CCNGG 2 cut(s) 66, 538
SetI ASST 6 cut(s) 195, 213, 534, 546, 586, 658
SfaNI GCATC 2 cut(s) 48, 495
SfcI CTRYAG 1 cut(s) 579
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 617
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 112, 186
SmoI CTYRAG 2 cut(s) 112, 186
Sse9I AATT 4 cut(s) 52, 374, 447, 609
SsiI CCGC 2 cut(s) 198, 683
SspI AATATT 2 cut(s) 169, 463
StyD4I CCNGG 2 cut(s) 64, 536
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 2 cut(s) 269, 781
TaqI TCGA 7 cut(s) 5, 56, 73, 187, 217, 274, 283
TaqII GACCGA 1 cut(s) 101
TasI AATT 4 cut(s) 52, 374, 447, 609
TauI GCSGC 1 cut(s) 685
TfiI GAWTC 4 cut(s) 100, 154, 574, 722
Tru1I TTAA 3 cut(s) 147, 165, 465
Tru9I TTAA 3 cut(s) 147, 165, 465
TspDTI ATGAA 7 cut(s) 105, 360, 396, 437, 441, 456, 711
TspGWI ACGGA 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 617
VspI ATTAAT 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 798
XapI RAATTY 1 cut(s) 374
XhoI CTCGAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.