Rroxscaffold_6G00400430
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002868
Physical Location & Seq
Reverse (-)
22520093 .. 22521774
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400430.1

Sequence Viewer

Length: 939 bp
ATGTTCATTGAAGATCCAGTTGACGTTTATTTGAATCCTCTTCCGTCCGGTTATCGATTTGCCCCTACCGATGCAGAGCTGATTCTATATTACTTGCAGAAAAAGATTTTGAAGCAGGAACTACCCCTTAACAAGATTCGTGAAATCGATATTTATCAATACGATCCTCAGTACCTTGCTGAGACACAGTTGAACAGACATGGAGAAAGAGAATGGTACTTTTTCACTCCCAGGGAGCGAAAGTACCCCCATGGTTCACGGCCAAATCGAACAGCACACGATGGATTCTGGAAGGTAACTGGAAAAGATGAAGTCATTAGATCAGCTACAGGTGAAATAATTGGATACAAAAATACTCTTGATTACTTTGAAGGGACACATTCAGAAAACCAAAAGACCAAATGGAAAATGCATGAATATAGACTCAAAAAATCAGAGAGAGATGAAGATATTGCTGCTTCAAATAATGAAAAATGTCAACGTGATATGAAGTTGGATGATTGTGTTTTGTGTAAGATTTACACAAGTAACAGATGCAAGGCCGGGAAAAGCACCAAGAAAATTAGCAACAGTGCAAAGAAATCATTCAATTCTGTCCAAGATAGAGATGTTCAGCATGAAAATCAGGATCAACCAACTTTTGGTGATGATTACAATTCCAATTCTTCCGCTGCATTTAACAATGGTTATGGTTCGACGAACAAATTTTGTGACCCTGCAAATCTTCCTCTGCAAGATCAAGCTTGTGGCGTCGTCCATCCTTCAGGACCCATCGATAACTTCAATAATCAAAACAATACACATTACAACATGCACTCAAGTTCTTTGGAAGATCATGTCAGAGACTTTGAGCGTTGGCTAATTACAGCCACGAAGAAGGAAAACCTGATCATGTACCTGATGGAATACAGTCTTCTAACATGCCAGATGATACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

312

Amino Acids

36.42

Weight (kDa)

6.38

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 142 4.7e-40 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 641
AciI CCGC 1 cut(s) 669
AclWI GGATC 3 cut(s) 8, 158, 636
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 750
AfaI GTAC 4 cut(s) 173, 218, 245, 896
AfiI CCNNNNNNNGG 1 cut(s) 641
AgsI TTSAA 8 cut(s) 11, 34, 112, 193, 371, 462, 589, 784
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 3 cut(s) 79, 326, 743
AluI AGCT 3 cut(s) 79, 326, 743
Alw26I GTCTC 2 cut(s) 176, 837
AlwI GGATC 3 cut(s) 8, 158, 636
AoxI GGCC 2 cut(s) 260, 540
ApeKI GCWGC 2 cut(s) 455, 671
ApoI RAATTY 1 cut(s) 704
Asp700I GAANNNNTTC 1 cut(s) 584
AspS9I GGNCC 1 cut(s) 767
AsuC2I CCSGG 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 344, 656
AvaII GGWCC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 905
BbvI GCAGC 2 cut(s) 442, 658
BccI CCATC 4 cut(s) 275, 765, 779, 895
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 1 cut(s) 338
BclI TGATCA 1 cut(s) 888
BcnI CCSGG 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 176, 837
BfaI CTAG 1 cut(s) 937
BfmI CTRYAG 1 cut(s) 327
BfuI GTATCC 1 cut(s) 338
BisI GCNGC 2 cut(s) 456, 672
BlsI GCNGC 2 cut(s) 457, 673
Bme1390I CCNGG 2 cut(s) 232, 544
Bme18I GGWCC 1 cut(s) 767
BmgT120I GGNCC 1 cut(s) 767
BmiI GGNNCC 1 cut(s) 769
BmrFI CCNGG 2 cut(s) 232, 544
BmsI GCATC 2 cut(s) 61, 524
BpiI GAAGAC 1 cut(s) 905
BpuEI CTTGAG 1 cut(s) 802
BpuMI CCSGG 1 cut(s) 544
Bsa29I ATCGAT 3 cut(s) 55, 147, 774
BsaBI GATNNNNATC 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 750
BsaJI CCNNGG 3 cut(s) 230, 231, 250
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse1I ACTGG 2 cut(s) 17, 304
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 232
BseCI ATCGAT 3 cut(s) 55, 147, 774
BseDI CCNNGG 3 cut(s) 230, 231, 250
BseGI GGATG 2 cut(s) 502, 757
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 171, 182
BseNI ACTGG 2 cut(s) 17, 304
BseXI GCAGC 2 cut(s) 442, 658
BshFI GGCC 2 cut(s) 262, 542
BshVI ATCGAT 3 cut(s) 55, 147, 774
BsiSI CCGG 2 cut(s) 48, 543
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 2 cut(s) 176, 837
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 2 cut(s) 262, 542
Bsp143I GATC 7 cut(s) 13, 163, 320, 628, 736, 832, 888
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 1 cut(s) 669
BspANI GGCC 2 cut(s) 262, 542
BspCNI CTCAG 2 cut(s) 172, 181
BspDI ATCGAT 3 cut(s) 55, 147, 774
BspLI GGNNCC 1 cut(s) 769
BspPI GGATC 3 cut(s) 8, 158, 636
BsrI ACTGG 2 cut(s) 17, 304
BssECI CCNNGG 3 cut(s) 230, 231, 250
BssMI GATC 7 cut(s) 13, 163, 320, 628, 736, 832, 888
BssNI GRCGYC 1 cut(s) 750
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 189, 572, 911
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 750
BstDEI CTNAG 2 cut(s) 168, 180
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 502, 757
BstKTI GATC 7 cut(s) 16, 166, 323, 631, 739, 835, 891
BstMAI GTCTC 2 cut(s) 176, 837
BstMBI GATC 7 cut(s) 13, 163, 320, 628, 736, 832, 888
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 814, 924
BstSCI CCNGG 2 cut(s) 230, 542
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 442, 658
BstV2I GAAGAC 1 cut(s) 905
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
Bsu15I ATCGAT 3 cut(s) 55, 147, 774
BsuI GTATCC 1 cut(s) 338
BsuRI GGCC 2 cut(s) 262, 542
BsuTUI ATCGAT 3 cut(s) 55, 147, 774
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 502, 757
BtsIMutI CAGTG 1 cut(s) 577
Cfr13I GGNCC 1 cut(s) 767
ClaI ATCGAT 3 cut(s) 55, 147, 774
CseI GACGC 1 cut(s) 739
Csp6I GTAC 4 cut(s) 172, 217, 244, 895
CviAII CATG 8 cut(s) 200, 251, 413, 617, 811, 836, 892, 921
CviJI RGCY 7 cut(s) 79, 262, 326, 542, 743, 859, 869
CviKI_1 RGCY 7 cut(s) 79, 262, 326, 542, 743, 859, 869
CviQI GTAC 4 cut(s) 172, 217, 244, 895
DdeI CTNAG 2 cut(s) 168, 180
DpnI GATC 7 cut(s) 15, 165, 322, 630, 738, 834, 890
DpnII GATC 7 cut(s) 13, 163, 320, 628, 736, 832, 888
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 767
Eco57I CTGAAG 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 8 cut(s) 203, 254, 416, 620, 814, 839, 895, 924
FaqI GGGAC 1 cut(s) 388
FatI CATG 8 cut(s) 199, 250, 412, 616, 810, 835, 891, 920
FbaI TGATCA 1 cut(s) 888
Fnu4HI GCNGC 2 cut(s) 456, 672
FokI GGATG 2 cut(s) 509, 744
Fsp4HI GCNGC 2 cut(s) 456, 672
FspBI CTAG 1 cut(s) 937
GluI GCNGC 2 cut(s) 456, 672
HaeIII GGCC 2 cut(s) 262, 542
HapII CCGG 2 cut(s) 48, 543
HgaI GACGC 1 cut(s) 739
Hin1I GRCGYC 1 cut(s) 750
Hin1II CATG 8 cut(s) 203, 254, 416, 620, 814, 839, 895, 924
HincII GTYRAC 2 cut(s) 22, 479
HindII GTYRAC 2 cut(s) 22, 479
HindIII AAGCTT 1 cut(s) 741
HinfI GANTC 5 cut(s) 34, 82, 136, 285, 423
HpaII CCGG 2 cut(s) 48, 543
HphI GGTGA 2 cut(s) 344, 656
Hpy166II GTNNAC 3 cut(s) 22, 257, 479
Hpy188I TCNGA 3 cut(s) 385, 436, 842
Hpy188III TCNNGA 5 cut(s) 140, 289, 359, 626, 765
Hpy8I GTNNAC 3 cut(s) 22, 257, 479
Hpy99I CGWCG 2 cut(s) 700, 755
HpyAV CCTTC 4 cut(s) 286, 365, 771, 871
HpyCH4III ACNGT 3 cut(s) 189, 572, 911
HpyCH4IV ACGT 2 cut(s) 24, 481
HpyCH4V TGCA 9 cut(s) 74, 97, 412, 537, 575, 674, 719, 733, 814
HpyF3I CTNAG 2 cut(s) 168, 180
HpySE526I ACGT 2 cut(s) 24, 481
Hsp92I GRCGYC 1 cut(s) 750
Hsp92II CATG 8 cut(s) 203, 254, 416, 620, 814, 839, 895, 924
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 7 cut(s) 13, 163, 320, 628, 736, 832, 888
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 2 cut(s) 442, 658
LweI GCATC 2 cut(s) 61, 524
MaeI CTAG 1 cut(s) 937
MaeII ACGT 2 cut(s) 24, 481
MaeIII GTNAC 3 cut(s) 295, 527, 710
MalI GATC 7 cut(s) 15, 165, 322, 630, 738, 834, 890
MboI GATC 7 cut(s) 13, 163, 320, 628, 736, 832, 888
MboII GAAGA 8 cut(s) 23, 32, 458, 657, 716, 842, 886, 905
MflI RGATCY 1 cut(s) 13
MluCI AATT 7 cut(s) 339, 561, 589, 655, 661, 704, 861
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 3 cut(s) 48, 177, 738
Mph1103I ATGCAT 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 584
MseI TTAA 2 cut(s) 129, 678
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 2 cut(s) 48, 543
MspR9I CCNGG 2 cut(s) 232, 544
MvaI CCWGG 1 cut(s) 232
NciI CCSGG 1 cut(s) 544
NcoI CCATGG 1 cut(s) 250
NdeII GATC 7 cut(s) 13, 163, 320, 628, 736, 832, 888
NlaIII CATG 8 cut(s) 203, 254, 416, 620, 814, 839, 895, 924
NlaIV GGNNCC 1 cut(s) 769
NmuCI GTSAC 1 cut(s) 710
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 2 cut(s) 814, 924
PasI CCCWGGG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 4 cut(s) 34, 82, 136, 285
PflMI CCANNNNNTGG 1 cut(s) 641
PkrI GCNGC 2 cut(s) 457, 673
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 767
Psp5II RGGWCCY 1 cut(s) 767
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 769
PspPI GGNCC 1 cut(s) 767
PspPPI RGGWCCY 1 cut(s) 767
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 4 cut(s) 173, 218, 245, 896
RsaNI GTAC 4 cut(s) 172, 217, 244, 895
SaqAI TTAA 2 cut(s) 129, 678
SatI GCNGC 2 cut(s) 456, 672
Sau3AI GATC 7 cut(s) 13, 163, 320, 628, 736, 832, 888
Sau96I GGNCC 1 cut(s) 767
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 2 cut(s) 232, 544
SfaNI GCATC 2 cut(s) 61, 524
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 817
SmoI CTYRAG 1 cut(s) 817
Sse9I AATT 7 cut(s) 339, 561, 589, 655, 661, 704, 861
SsiI CCGC 1 cut(s) 669
SspMI CTAG 1 cut(s) 937
StyD4I CCNGG 2 cut(s) 230, 542
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 189, 572, 911
TaiI ACGT 2 cut(s) 27, 484
TaqI TCGA 5 cut(s) 55, 147, 268, 695, 774
TasI AATT 7 cut(s) 339, 561, 589, 655, 661, 704, 861
TfiI GAWTC 4 cut(s) 34, 82, 136, 285
Tru1I TTAA 2 cut(s) 129, 678
Tru9I TTAA 2 cut(s) 129, 678
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 2 cut(s) 455, 671
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 6 cut(s) 324, 429, 459, 483, 503, 633
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 577
Van91I CCANNNNNTGG 1 cut(s) 641
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 1 cut(s) 704
XceI RCATGY 2 cut(s) 814, 924
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 1 cut(s) 937
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.