Rh3DG270300
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002868
Physical Location & Seq
Forward (+)
27036704 .. 27038350
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG270300.1

Sequence Viewer

Length: 828 bp
ATGTCGAACAACATGGTTCCAGTAGTCTTGAATGAGACTGATGATTACTTTAATTCGATGCCACCCGGTTTTCGATTTGTTCCGACCGATGAAGTCTTGATTCTATGTTACTTGAGGAAGGAGTTATTGAACGAACCATTGCCCATTAACAGGATTCGTCATGTTAATATTTATCAATACCATCCTCGAGACCTTACCGCTATGTACGACCTCCTTAGAGAAAGTGAATGGTACTATTTCACTCCTATTACTCGAAAGTATGTGCACAGTTCTCGACCAAATCGAGTTGCACCGAATGGTTTTTGGAAGCCAAGAATGAGCAACCCCATCAAAGATAGGAATAATGAAGTAGTTGGGTACAGGACGAGTCTGGAATTTTATGAAGGGAAATATCCAAACGGAAATAAGACAGGGTGGAAAATGAATGAATATACAATCAATGAAGCAATTATTCCTCCAAATATTAATACAAATGGCAAAACTCGCATCAAGTTGGATGATTGTGTTTTGTGCAAGATTTTTACGCTTAAGGTGGCCAGGAAGCTTCAGAATGAGATACAATATCAGTTGGAGAATCCTATAGGTCGTAACAAAGCAACATCAACATCAATTGTTGGTCCAAGTAACACTACTACAACAACTGGTGATCAGTTACCTGTGCATGACGCCATGGAACATGAGCCGCATAGTAACCATGAAGTGCAACAAGATGGTTCTTCTGATTCTAAGCACGAAGAAGATGATGATGGTTGGTTGATCATTGGAGTAGAGTCTCTGAATATCTCTTCAGATCCTATGATAGAGGGTGATTTCGGCCGTCACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

275

Amino Acids

31.76

Weight (kDa)

5.74

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 21 - 145 7.2e-33 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 683
AclWI GGATC 1 cut(s) 785
AcoI YGGCCR 2 cut(s) 534, 814
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 2 cut(s) 530, 771
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 3 cut(s) 206, 233, 359
AfiI CCNNNNNNNGG 1 cut(s) 150
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 2 cut(s) 31, 130
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 1 cut(s) 544
AluI AGCT 1 cut(s) 544
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 3 cut(s) 29, 183, 777
Alw44I GTGCAC 1 cut(s) 263
AlwI GGATC 1 cut(s) 785
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 2 cut(s) 534, 814
ApaLI GTGCAC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 374
AseI ATTAAT 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 656, 818
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 267
BalI TGGCCA 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 267
BccI CCATC 4 cut(s) 189, 335, 704, 740
BceAI ACGGC 1 cut(s) 801
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 538
BclI TGATCA 2 cut(s) 646, 756
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 3 cut(s) 29, 183, 777
BfmI CTRYAG 1 cut(s) 579
BfrI CTTAAG 1 cut(s) 527
BisI GCNGC 1 cut(s) 683
BlsI GCNGC 1 cut(s) 684
Bme1390I CCNGG 2 cut(s) 66, 538
Bme18I GGWCC 1 cut(s) 617
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 66, 538
BmsI GCATC 2 cut(s) 48, 495
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 669
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 2 cut(s) 20, 646
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 538
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 2 cut(s) 181, 502
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 20, 646
BseSI GKGCMC 1 cut(s) 267
BseX3I CGGCCG 1 cut(s) 814
Bsh1285I CGRYCG 2 cut(s) 87, 817
BshFI GGCC 2 cut(s) 536, 816
BsiEI CGRYCG 2 cut(s) 87, 817
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 3 cut(s) 29, 183, 777
BsnI GGCC 2 cut(s) 536, 816
Bso31I GGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 646, 756, 790
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 2 cut(s) 198, 683
BspANI GGCC 2 cut(s) 536, 816
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 785
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 2 cut(s) 20, 646
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 3 cut(s) 646, 756, 790
BssNI GRCGYC 1 cut(s) 666
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 790
BstACI GRCGYC 1 cut(s) 666
BstAFI CTTAAG 1 cut(s) 527
BstDEI CTNAG 2 cut(s) 215, 726
BstDSI CCRYGG 1 cut(s) 669
BstF5I GGATG 2 cut(s) 181, 502
BstKTI GATC 3 cut(s) 649, 759, 793
BstMAI GTCTC 3 cut(s) 29, 183, 777
BstMBI GATC 3 cut(s) 646, 756, 790
BstMCI CGRYCG 2 cut(s) 87, 817
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNI CCWGG 1 cut(s) 538
BstSCI CCNGG 2 cut(s) 64, 536
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
BstZI CGGCCG 1 cut(s) 814
BsuRI GGCC 2 cut(s) 536, 816
BtgI CCRYGG 1 cut(s) 669
BtsCI GGATG 2 cut(s) 181, 502
Cfr13I GGNCC 1 cut(s) 617
CseI GACGC 1 cut(s) 674
Csp6I GTAC 3 cut(s) 205, 232, 358
CviAII CATG 6 cut(s) 13, 161, 662, 670, 677, 695
CviJI RGCY 5 cut(s) 310, 536, 544, 682, 816
CviKI_1 RGCY 5 cut(s) 310, 536, 544, 682, 816
CviQI GTAC 3 cut(s) 205, 232, 358
DdeI CTNAG 2 cut(s) 215, 726
DpnI GATC 3 cut(s) 648, 758, 792
DpnII GATC 3 cut(s) 646, 756, 790
EaeI YGGCCR 2 cut(s) 534, 814
EagI CGGCCG 1 cut(s) 814
Eam1104I CTCTTC 1 cut(s) 790
EarI CTCTTC 1 cut(s) 790
EclXI CGGCCG 1 cut(s) 814
Eco130I CCWWGG 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 617
Eco52I CGGCCG 1 cut(s) 814
Eco57I CTGAAG 2 cut(s) 530, 771
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 6 cut(s) 16, 164, 665, 673, 680, 698
FatI CATG 6 cut(s) 12, 160, 661, 669, 676, 694
FbaI TGATCA 2 cut(s) 646, 756
Fnu4HI GCNGC 1 cut(s) 683
FokI GGATG 2 cut(s) 168, 509
Fsp4HI GCNGC 1 cut(s) 683
GluI GCNGC 1 cut(s) 683
HaeIII GGCC 2 cut(s) 536, 816
HapII CCGG 1 cut(s) 66
HgaI GACGC 1 cut(s) 674
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 6 cut(s) 16, 164, 665, 673, 680, 698
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 6 cut(s) 100, 154, 367, 574, 722, 770
HpaII CCGG 1 cut(s) 66
HphI GGTGA 2 cut(s) 656, 818
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 5 cut(s) 84, 549, 721, 777, 790
Hpy188III TCNNGA 5 cut(s) 28, 97, 188, 273, 371
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 112, 377
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 265, 290, 513, 661, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 2 cut(s) 215, 726
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 6 cut(s) 16, 164, 665, 673, 680, 698
Ksp22I TGATCA 2 cut(s) 646, 756
Kzo9I GATC 3 cut(s) 646, 756, 790
LweI GCATC 2 cut(s) 48, 495
MaeIII GTNAC 6 cut(s) 107, 587, 623, 651, 689, 818
MalI GATC 3 cut(s) 648, 758, 792
MboI GATC 3 cut(s) 646, 756, 790
MboII GAAGA 4 cut(s) 708, 746, 749, 777
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 1 cut(s) 267
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 5 cut(s) 52, 374, 447, 609, 823
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 2 cut(s) 376, 779
MmeI TCCRAC 3 cut(s) 107, 474, 549
MnlI CCTC 5 cut(s) 108, 195, 221, 465, 796
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
MseI TTAA 5 cut(s) 51, 147, 165, 465, 528
Msp20I TGGCCA 1 cut(s) 536
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 66, 538
MunI CAATTG 1 cut(s) 609
MvaI CCWGG 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 483
NciI CCSGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 669
NdeII GATC 3 cut(s) 646, 756, 790
NlaIII CATG 6 cut(s) 16, 164, 665, 673, 680, 698
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 818
PaeR7I CTCGAG 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfeI GAWTC 4 cut(s) 100, 154, 574, 722
PkrI GCNGC 1 cut(s) 684
PleI GAGTC 2 cut(s) 375, 778
PpsI GAGTC 2 cut(s) 375, 778
PshBI ATTAAT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 617
PsuI RGATCY 1 cut(s) 790
RsaI GTAC 3 cut(s) 206, 233, 359
RsaNI GTAC 3 cut(s) 205, 232, 358
SaqAI TTAA 5 cut(s) 51, 147, 165, 465, 528
SatI GCNGC 1 cut(s) 683
Sau3AI GATC 3 cut(s) 646, 756, 790
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 2 cut(s) 376, 779
ScrFI CCNGG 2 cut(s) 66, 538
SduI GDGCHC 1 cut(s) 267
SetI ASST 6 cut(s) 195, 213, 534, 546, 586, 658
SfaNI GCATC 2 cut(s) 48, 495
SfcI CTRYAG 1 cut(s) 579
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 617
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 3 cut(s) 112, 186, 527
SmoI CTYRAG 3 cut(s) 112, 186, 527
Sse9I AATT 5 cut(s) 52, 374, 447, 609, 823
SsiI CCGC 2 cut(s) 198, 683
SspI AATATT 2 cut(s) 169, 463
StyD4I CCNGG 2 cut(s) 64, 536
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 7 cut(s) 5, 56, 73, 187, 253, 274, 283
TaqII GACCGA 1 cut(s) 101
TasI AATT 5 cut(s) 52, 374, 447, 609, 823
TauI GCSGC 1 cut(s) 685
TfiI GAWTC 4 cut(s) 100, 154, 574, 722
Tru1I TTAA 5 cut(s) 51, 147, 165, 465, 528
Tru9I TTAA 5 cut(s) 51, 147, 165, 465, 528
TseFI GTSAC 1 cut(s) 818
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 7 cut(s) 105, 360, 396, 437, 441, 456, 711
TspGWI ACGGA 1 cut(s) 414
Vha464I CTTAAG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 617
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 1 cut(s) 374
XhoI CTCGAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.