Rh3CG273300
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002868
Physical Location & Seq
Forward (+)
27128898 .. 27130749
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG273300.1

Sequence Viewer

Length: 639 bp
ATGTTCTCAGCTATGTACGACCTCCTTAGAGAAAGTGAATGGTACTATTTCACTCCTATTACTCGAAAGTATGTGAACAGTTCTCGACCAAATCGAGTTGCACCGAATGGTTTTTGGAAGCCAAGAATGAGCAACCCCATCAAAGATAGGAATAATGAAGTAGTTGGGTACAGGACGAGTCTGGAATTTTATGAAGGGAAATATCCAAACGGAAATAAGACAGGGTGGAAAATGAATGAATATACAATCAATGAAGCAATTATTCCTCCAAATATTAATACAAATGGCAAAACTCGCATCAAGTTGGATGATTGTGTTTTGTGCAAGATTTTTACGCTTAAGGTGGCCAGGAAGCTTCAGAATGAGATACAATATCAGTTGGAGAATCCTATAGGTCGTAACAAAGCAACATCAACATCAATTGTTGGTCCAAGTAACACTACTACAACAACAGGTGATCAGTTACCTGTGCATGACGCCATGGAACATGAGCCGCATAGTAACCATGAAGTGCAACAAGATGGTTCTTCTGATTCTAAGCACGAAGAAGATGATGATGGTTGGTTGATCATTGGAGTAGAGTCTCTGAATATCTCTTCAGATCCTATGATAGAGGGTGATTTCGGCCGTCACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

212

Amino Acids

24.26

Weight (kDa)

5.71

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 82 1.4e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 494
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 2 cut(s) 345, 625
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 341, 582
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 3 cut(s) 17, 44, 170
AflII CTTAAG 1 cut(s) 338
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 2 cut(s) 11, 355
AluI AGCT 2 cut(s) 11, 355
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 1 cut(s) 596
AoxI GGCC 2 cut(s) 345, 625
ApoI RAATTY 1 cut(s) 185
AseI ATTAAT 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 2 cut(s) 467, 629
AvaII GGWCC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 347
BccI CCATC 3 cut(s) 146, 515, 551
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 1 cut(s) 349
BclI TGATCA 2 cut(s) 457, 567
BcoDI GTCTC 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 390
BfrI CTTAAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 494
BlsI GCNGC 1 cut(s) 495
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 21
BseX3I CGGCCG 1 cut(s) 625
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 2 cut(s) 347, 627
BsiEI CGRYCG 1 cut(s) 628
BsmAI GTCTC 1 cut(s) 588
BsnI GGCC 2 cut(s) 347, 627
Bsp143I GATC 3 cut(s) 457, 567, 601
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 1 cut(s) 494
BspANI GGCC 2 cut(s) 347, 627
BspCNI CTCAG 1 cut(s) 20
BspPI GGATC 1 cut(s) 596
BspTI CTTAAG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 3 cut(s) 457, 567, 601
BssNI GRCGYC 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 601
BstACI GRCGYC 1 cut(s) 477
BstAFI CTTAAG 1 cut(s) 338
BstDEI CTNAG 3 cut(s) 7, 26, 537
BstDSI CCRYGG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 3 cut(s) 460, 570, 604
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 3 cut(s) 457, 567, 601
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BstZI CGGCCG 1 cut(s) 625
BsuRI GGCC 2 cut(s) 347, 627
BtgI CCRYGG 1 cut(s) 480
BtsCI GGATG 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 1 cut(s) 485
Csp6I GTAC 3 cut(s) 16, 43, 169
CviAII CATG 4 cut(s) 473, 481, 488, 506
CviJI RGCY 6 cut(s) 11, 121, 347, 355, 493, 627
CviKI_1 RGCY 6 cut(s) 11, 121, 347, 355, 493, 627
CviQI GTAC 3 cut(s) 16, 43, 169
DdeI CTNAG 3 cut(s) 7, 26, 537
DpnI GATC 3 cut(s) 459, 569, 603
DpnII GATC 3 cut(s) 457, 567, 601
EaeI YGGCCR 2 cut(s) 345, 625
EagI CGGCCG 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
EclXI CGGCCG 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 428
Eco52I CGGCCG 1 cut(s) 625
Eco57I CTGAAG 2 cut(s) 341, 582
EcoRII CCWGG 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 4 cut(s) 476, 484, 491, 509
FatI CATG 4 cut(s) 472, 480, 487, 505
FbaI TGATCA 2 cut(s) 457, 567
Fnu4HI GCNGC 1 cut(s) 494
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 494
GluI GCNGC 1 cut(s) 494
HaeIII GGCC 2 cut(s) 347, 627
HgaI GACGC 1 cut(s) 485
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 4 cut(s) 476, 484, 491, 509
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 4 cut(s) 178, 385, 533, 581
HphI GGTGA 2 cut(s) 467, 629
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 360, 532, 588, 601
Hpy188III TCNNGA 2 cut(s) 84, 182
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 101, 324, 472, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 3 cut(s) 7, 26, 537
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 4 cut(s) 476, 484, 491, 509
Ksp22I TGATCA 2 cut(s) 457, 567
Kzo9I GATC 3 cut(s) 457, 567, 601
LpnPI CCDG 7 cut(s) 157, 167, 207, 334, 361, 438, 480
LweI GCATC 1 cut(s) 306
MaeIII GTNAC 5 cut(s) 398, 434, 462, 500, 629
MalI GATC 3 cut(s) 459, 569, 603
MboI GATC 3 cut(s) 457, 567, 601
MboII GAAGA 4 cut(s) 519, 557, 560, 588
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 601
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 4 cut(s) 185, 258, 420, 634
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 2 cut(s) 187, 590
MmeI TCCRAC 2 cut(s) 285, 360
MnlI CCTC 3 cut(s) 32, 276, 607
Mox20I TGGCCA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 347
MseI TTAA 2 cut(s) 276, 339
Msp20I TGGCCA 1 cut(s) 347
MspCI CTTAAG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 349
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 294
NcoI CCATGG 1 cut(s) 480
NdeII GATC 3 cut(s) 457, 567, 601
NlaIII CATG 4 cut(s) 476, 484, 491, 509
NmuCI GTSAC 1 cut(s) 629
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PfeI GAWTC 2 cut(s) 385, 533
PkrI GCNGC 1 cut(s) 495
PleI GAGTC 2 cut(s) 186, 589
PpsI GAGTC 2 cut(s) 186, 589
PshBI ATTAAT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspPI GGNCC 1 cut(s) 428
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 3 cut(s) 17, 44, 170
RsaNI GTAC 3 cut(s) 16, 43, 169
SaqAI TTAA 2 cut(s) 276, 339
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 3 cut(s) 457, 567, 601
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 2 cut(s) 187, 590
ScrFI CCNGG 1 cut(s) 349
SetI ASST 7 cut(s) 13, 24, 345, 357, 397, 457, 469
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 4 cut(s) 185, 258, 420, 634
SsiI CCGC 1 cut(s) 494
SspI AATATT 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 64, 85, 94
TasI AATT 4 cut(s) 185, 258, 420, 634
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 2 cut(s) 385, 533
Tru1I TTAA 2 cut(s) 276, 339
Tru9I TTAA 2 cut(s) 276, 339
TseFI GTSAC 1 cut(s) 629
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 6 cut(s) 171, 207, 248, 252, 267, 522
TspGWI ACGGA 1 cut(s) 225
Vha464I CTTAAG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 428
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.